Wall clock time and date at job start Tue Mar 31 2020 19:15:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86803 * 120.00123 * 2 1
4 4 H 1.48492 * 109.46973 * 269.99872 * 3 2 1
5 5 H 1.48497 * 109.46803 * 30.00436 * 3 2 1
6 6 H 1.48503 * 109.47059 * 150.00315 * 3 2 1
7 7 C 1.37884 * 119.99979 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99874 * 359.97438 * 7 2 1
9 9 C 1.50700 * 119.99785 * 180.02562 * 7 2 1
10 10 N 1.46500 * 109.46711 * 179.97438 * 9 7 2
11 11 C 1.34779 * 119.99896 * 179.97438 * 10 9 7
12 12 O 1.21484 * 120.00123 * 359.97438 * 11 10 9
13 13 C 1.48371 * 119.99809 * 179.97438 * 11 10 9
14 14 C 1.40226 * 119.21902 * 180.02562 * 13 11 10
15 15 C 1.36635 * 119.90261 * 179.97438 * 14 13 11
16 16 C 1.40567 * 118.11051 * 359.97438 * 15 14 13
17 17 C 1.40390 * 122.05817 * 180.02562 * 16 15 14
18 18 N 1.31246 * 119.89636 * 180.02562 * 17 16 15
19 19 C 1.32583 * 122.70031 * 359.95128 * 18 17 16
20 20 C 1.36203 * 121.97515 * 0.04990 * 19 18 17
21 21 Br 1.89097 * 120.62548 * 179.97438 * 20 19 18
22 22 C 1.41032 * 118.74512 * 359.97438 * 20 19 18
23 23 N 1.31987 * 119.22431 * 359.97438 * 13 11 10
24 24 H 0.97002 * 119.99553 * 359.97438 * 1 2 3
25 25 H 1.08998 * 109.47423 * 60.00210 * 9 7 2
26 26 H 1.08994 * 109.46950 * 299.99011 * 9 7 2
27 27 H 0.97001 * 120.00306 * 359.97438 * 10 9 7
28 28 H 1.08000 * 120.04718 * 0.24491 * 14 13 11
29 29 H 1.07999 * 120.94219 * 179.97438 * 15 14 13
30 30 H 1.07999 * 120.05271 * 359.95608 * 17 16 15
31 31 H 1.07997 * 119.00976 * 180.02562 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4401 0.7000
7 6 2.0046 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5116 -1.1941 0.0000
10 7 3.9998 -2.5753 -0.0001
11 6 5.3249 -2.8216 -0.0001
12 8 6.1144 -1.8983 -0.0006
13 6 5.8194 -4.2205 0.0003
14 6 7.2014 -4.4580 0.0008
15 6 7.6721 -5.7407 0.0017
16 6 6.7364 -6.7896 0.0028
17 6 7.1281 -8.1377 0.0043
18 7 6.2181 -9.0834 0.0047
19 6 4.9175 -8.8259 0.0047
20 6 4.4344 -7.5525 0.0032
21 35 2.5713 -7.2290 0.0024
22 6 5.3499 -6.4797 0.0022
23 7 4.9482 -5.2119 0.0013
24 1 -0.4849 0.8401 0.0004
25 1 3.8746 -0.6809 0.8905
26 1 3.8752 -0.6798 -0.8895
27 1 3.3695 -3.3126 -0.0001
28 1 7.8927 -3.6282 0.0048
29 1 8.7330 -5.9429 0.0017
30 1 8.1767 -8.3962 0.0040
31 1 4.2203 -9.6507 0.0055
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001568272451.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:15:59
Heat of formation + Delta-G solvation = 11.139576 kcal
Electronic energy + Delta-G solvation = -19437.703449 eV
Core-core repulsion = 16150.514958 eV
Total energy + Delta-G solvation = -3287.188491 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 335.001 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-42.49840 -40.76452 -38.93430 -36.34929 -35.19256 -34.47079 -33.24732 -32.37036
-30.53467 -30.01846 -26.92193 -25.50506 -24.17854 -23.55006 -21.99959 -20.15983
-19.64847 -18.57990 -18.28510 -17.37326 -16.95979 -16.69319 -16.26849 -15.89281
-15.88146 -15.44732 -15.11768 -14.60777 -14.42817 -14.27705 -14.06563 -13.74770
-13.50107 -13.10288 -12.71157 -12.65574 -11.93312 -11.72544 -11.54866 -11.46454
-11.34430 -10.96745 -10.93675 -10.61988 -10.56208 -10.04929 -9.57979 -8.40890
-6.49659 -1.25470 -0.68143 0.49916 0.52536 1.24696 1.34167 1.34889
1.47937 2.07186 2.09507 2.27740 2.71690 2.81024 2.94068 3.24572
3.31198 3.41404 3.53056 3.72543 3.96622 4.18700 4.22253 4.59079
4.65221 4.72366 4.85722 4.96250 5.13174 5.19730 5.32754 5.35378
6.00175 6.30719 6.49878 6.60467 6.69355 7.02566 7.19491 8.74314
Molecular weight = 335.00amu
Principal moments of inertia in cm(-1)
A = 0.015348 B = 0.004079 C = 0.003228
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1823.876755 B = 6863.112250 C = 8671.844926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.026 3.974
3 Si 0.943 3.057
4 H -0.262 1.262
5 H -0.273 1.273
6 H -0.254 1.254
7 C -0.552 4.552
8 H 0.051 0.949
9 C 0.230 3.770
10 N -0.684 5.684
11 C 0.549 3.451
12 O -0.567 6.567
13 C 0.137 3.863
14 C -0.140 4.140
15 C 0.004 3.996
16 C -0.161 4.161
17 C 0.200 3.800
18 N -0.493 5.493
19 C 0.137 3.863
20 C -0.145 4.145
21 Br -0.023 7.023
22 C 0.149 3.851
23 N -0.471 5.471
24 H 0.273 0.727
25 H 0.024 0.976
26 H 0.023 0.977
27 H 0.411 0.589
28 H 0.168 0.832
29 H 0.217 0.783
30 H 0.229 0.771
31 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.390 -20.756 0.012 27.078
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.174 4.174
3 Si 0.765 3.235
4 H -0.187 1.187
5 H -0.198 1.198
6 H -0.178 1.178
7 C -0.590 4.590
8 H 0.069 0.931
9 C 0.107 3.893
10 N -0.332 5.332
11 C 0.333 3.667
12 O -0.447 6.447
13 C -0.016 4.016
14 C -0.160 4.160
15 C -0.023 4.023
16 C -0.166 4.166
17 C 0.027 3.973
18 N -0.201 5.201
19 C -0.008 4.008
20 C -0.228 4.228
21 Br 0.062 6.938
22 C 0.019 3.981
23 N -0.183 5.183
24 H 0.082 0.918
25 H 0.042 0.958
26 H 0.041 0.959
27 H 0.247 0.753
28 H 0.186 0.814
29 H 0.234 0.766
30 H 0.246 0.754
31 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges 16.176 -20.645 0.014 26.228
hybrid contribution -0.158 1.378 -0.014 1.387
sum 16.018 -19.268 0.000 25.056
Atomic orbital electron populations
1.70000 1.07905 1.28741 1.50392 1.25662 0.95597 1.02887 0.93265
0.85784 0.79364 0.78668 0.79658 1.18711 1.19753 1.17837 1.21245
0.89953 0.94514 1.53274 0.93103 1.19273 0.93560 0.79983 0.96524
1.46068 1.06599 1.10562 1.69931 1.18460 0.82776 0.87970 0.77471
1.90711 1.56002 1.45347 1.52631 1.21514 0.92446 0.91666 0.95949
1.22053 0.93872 1.00612 0.99505 1.22049 1.02396 0.88733 0.89131
1.20236 0.93032 0.98611 1.04673 1.24258 1.01823 0.84954 0.86249
1.67809 1.01292 1.37321 1.13697 1.22669 0.93042 0.93787 0.91296
1.22747 0.92301 0.95835 1.11936 1.96821 1.02637 1.97063 1.97303
1.18799 0.92342 0.90302 0.96706 1.67843 1.38649 0.99442 1.12362
0.91763 0.95844 0.95947 0.75290 0.81416 0.76627 0.75449 0.79718
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.95 13.96 21.45 0.30 -56.65 16
2 C 0.03 1.51 5.47 84.66 0.46 1.97 16
3 Si 0.94 44.12 27.47 68.60 1.88 46.00 16
4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16
5 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
6 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16
7 C -0.55 -31.78 9.83 25.60 0.25 -31.53 16
8 H 0.05 3.16 7.84 -2.91 -0.02 3.14 16
9 C 0.23 11.61 4.50 85.63 0.38 12.00 16
10 N -0.68 -30.38 5.54 -469.21 -2.60 -32.98 16
11 C 0.55 21.83 7.82 86.94 0.68 22.51 16
12 O -0.57 -24.63 16.28 -3.66 -0.06 -24.69 16
13 C 0.14 4.24 6.75 42.30 0.29 4.53 16
14 C -0.14 -2.91 9.54 22.38 0.21 -2.70 16
15 C 0.00 0.05 9.92 22.46 0.22 0.27 16
16 C -0.16 -2.65 5.75 -21.24 -0.12 -2.77 16
17 C 0.20 2.19 11.05 85.30 0.94 3.13 16
18 N -0.49 -7.89 10.30 -195.56 -2.01 -9.90 16
19 C 0.14 2.54 10.81 84.11 0.91 3.45 16
20 C -0.15 -3.50 6.26 22.48 0.14 -3.36 16
21 Br -0.02 -0.63 33.31 -20.37 -0.68 -1.31 16
22 C 0.15 3.83 6.62 40.60 0.27 4.09 16
23 N -0.47 -14.81 8.96 -177.55 -1.59 -16.40 16
24 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16
25 H 0.02 1.22 7.20 -2.39 -0.02 1.20 16
26 H 0.02 1.15 7.57 -2.39 -0.02 1.13 16
27 H 0.41 17.97 7.62 -92.71 -0.71 17.26 16
28 H 0.17 3.15 7.60 -2.91 -0.02 3.13 16
29 H 0.22 -0.03 8.06 -2.91 -0.02 -0.05 16
30 H 0.23 -0.01 8.06 -2.91 -0.02 -0.04 16
31 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16
Total: -1.00 -75.16 301.18 0.32 -74.84
By element:
Atomic # 1 Polarization: 9.06 SS G_CDS: 0.44 Total: 9.50 kcal
Atomic # 6 Polarization: 6.95 SS G_CDS: 4.64 Total: 11.59 kcal
Atomic # 7 Polarization: -110.03 SS G_CDS: -5.90 Total: -115.93 kcal
Atomic # 8 Polarization: -24.63 SS G_CDS: -0.06 Total: -24.69 kcal
Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal
Atomic # 35 Polarization: -0.63 SS G_CDS: -0.68 Total: -1.31 kcal
Total: -75.16 0.32 -74.84 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568272451.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.977 kcal
(2) G-P(sol) polarization free energy of solvation -75.157 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.820 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.140 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds