Wall clock time and date at job start Tue Mar 31 2020 18:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99889 * 2 1 4 4 C 1.52999 * 109.46988 * 269.99495 * 3 2 1 5 5 C 1.52999 * 109.47260 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47272 * 179.97438 * 5 4 3 7 7 C 1.36931 * 120.00468 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99753 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00663 * 180.02562 * 7 6 5 10 10 N 1.31624 * 120.00333 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99537 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47187 * 90.00286 * 11 9 7 13 13 H 1.48502 * 109.46899 * 209.99764 * 11 9 7 14 14 H 1.48491 * 109.47270 * 329.99762 * 11 9 7 15 15 C 1.34779 * 120.00342 * 179.97438 * 2 1 3 16 16 O 1.21602 * 120.00367 * 181.99604 * 15 2 1 17 17 C 1.47427 * 119.99616 * 1.99815 * 15 2 1 18 18 C 1.41289 * 126.41563 * 353.83999 * 17 15 2 19 19 N 1.30449 * 108.02647 * 179.72327 * 18 17 15 20 20 N 1.39941 * 108.89153 * 0.44021 * 19 18 17 21 21 C 1.46498 * 125.75022 * 179.81220 * 20 19 18 22 22 C 1.53004 * 109.47275 * 94.69773 * 21 20 19 23 23 C 1.52997 * 109.47230 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.46913 * 299.99711 * 23 22 21 25 25 C 1.52994 * 109.47280 * 60.00295 * 24 23 22 26 26 C 1.53000 * 109.46884 * 214.69494 * 21 20 19 27 27 C 1.34257 * 108.49063 * 359.55254 * 20 19 18 28 28 H 1.09000 * 109.47670 * 240.16354 * 1 2 3 29 29 H 1.09009 * 109.47133 * 0.16960 * 1 2 3 30 30 H 1.09002 * 109.46856 * 120.16529 * 1 2 3 31 31 H 1.08997 * 109.47423 * 29.99579 * 3 2 1 32 32 H 1.09001 * 109.47266 * 149.99783 * 3 2 1 33 33 H 1.09004 * 109.47457 * 300.00435 * 4 3 2 34 34 H 1.09005 * 109.47302 * 59.99767 * 4 3 2 35 35 H 1.08997 * 109.47170 * 300.00095 * 5 4 3 36 36 H 1.09001 * 109.47248 * 60.00132 * 5 4 3 37 37 H 0.97001 * 119.99795 * 359.97438 * 6 5 4 38 38 H 0.96996 * 119.99683 * 179.97438 * 10 9 7 39 39 H 1.08005 * 125.99038 * 0.02562 * 18 17 15 40 40 H 1.08998 * 109.47539 * 334.69523 * 21 20 19 41 41 H 1.08998 * 109.47041 * 59.99445 * 22 21 20 42 42 H 1.09004 * 109.46407 * 299.99788 * 22 21 20 43 43 H 1.08998 * 109.47554 * 59.99768 * 23 22 21 44 44 H 1.08999 * 109.47001 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.47231 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.46829 * 299.99910 * 24 23 22 47 47 H 1.08998 * 109.47021 * 60.00045 * 25 24 23 48 48 H 1.08998 * 109.47391 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.47541 * 60.00545 * 26 21 20 50 50 H 1.09001 * 109.47290 * 299.99605 * 26 21 20 51 51 H 1.07997 * 126.28924 * 180.26202 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4426 6 7 3.4628 3.4576 -2.8238 7 6 4.1360 4.6234 -3.0741 8 1 4.4870 5.2313 -2.2532 9 6 4.3675 5.0240 -4.3829 10 7 5.0142 6.1449 -4.6234 11 14 3.7600 3.9730 -5.8026 12 1 2.3868 4.3952 -6.1788 13 1 4.6662 4.1422 -6.9669 14 1 3.7440 2.5464 -5.3910 15 6 2.1389 -1.1672 0.0005 16 8 3.3544 -1.1675 0.0372 17 6 1.4024 -2.4436 -0.0434 18 6 0.0011 -2.6064 0.0335 19 7 -0.2621 -3.8816 -0.0462 20 7 0.9411 -4.5860 -0.1660 21 6 1.0739 -6.0406 -0.2774 22 6 1.1548 -6.4339 -1.7539 23 6 1.2942 -7.9530 -1.8702 24 6 2.5671 -8.4049 -1.1516 25 6 2.4862 -8.0118 0.3248 26 6 2.3466 -6.4931 0.4413 27 6 1.9528 -3.7034 -0.1674 28 1 -0.3634 -0.5113 0.8914 29 1 -0.3634 1.0277 -0.0030 30 1 -0.3633 -0.5164 -0.8885 31 1 1.6084 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.0416 0.9507 -1.9563 34 1 1.5001 1.8406 -1.9565 35 1 2.6293 3.7949 -0.9287 36 1 4.1705 2.9044 -0.9288 37 1 3.1480 2.9114 -3.5610 38 1 5.1762 6.4246 -5.5379 39 1 -0.7254 -1.8137 0.1352 40 1 0.2085 -6.5206 0.1795 41 1 2.0203 -5.9539 -2.2107 42 1 0.2481 -6.1115 -2.2658 43 1 0.4290 -8.4333 -1.4132 44 1 1.3514 -8.2331 -2.9220 45 1 2.6666 -9.4871 -1.2348 46 1 3.4323 -7.9246 -1.6087 47 1 1.6211 -8.4921 0.7818 48 1 3.3933 -8.3333 0.8366 49 1 2.2890 -6.2131 1.4931 50 1 3.2121 -6.0132 -0.0157 51 1 3.0041 -3.9363 -0.2502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569255019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:43 Heat of formation + Delta-G solvation = 52.871275 kcal Electronic energy + Delta-G solvation = -28379.962579 eV Core-core repulsion = 24509.353272 eV Total energy + Delta-G solvation = -3870.609307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.85381 -39.63694 -38.70488 -36.17485 -35.01172 -33.62310 -32.23387 -31.53115 -30.71906 -30.25991 -29.14788 -27.27345 -25.74200 -23.98859 -23.36824 -22.64279 -21.78821 -21.16112 -20.97031 -20.09364 -19.51994 -17.75796 -17.47913 -16.56011 -16.15076 -15.87590 -15.50585 -15.15015 -15.06471 -14.77012 -14.56380 -14.44941 -14.37008 -13.82951 -13.54051 -13.34716 -13.26562 -13.17131 -12.97798 -12.88168 -12.76478 -12.16953 -12.09400 -11.99907 -11.82554 -11.70925 -11.38533 -11.25823 -11.13560 -11.05336 -10.89111 -10.87514 -10.73905 -10.42472 -10.08689 -9.83954 -9.78213 -9.53685 -8.95426 -8.83185 -8.60980 -7.16344 -5.71164 -3.05978 1.31470 1.95376 1.97807 2.99161 3.39666 3.42234 3.46116 3.49375 3.81754 4.00805 4.18856 4.31090 4.38470 4.51503 4.53106 4.64856 4.66151 4.72805 4.74103 4.78368 4.92162 4.94021 5.05217 5.10972 5.20787 5.21317 5.32339 5.35672 5.38122 5.39672 5.43674 5.44255 5.50477 5.56826 5.58942 5.62595 5.68361 5.75460 5.87925 5.99061 6.09379 6.16089 6.33685 6.53667 6.57037 6.83077 6.85540 7.27531 7.39995 8.05755 8.25783 8.48272 9.27644 10.00350 10.20796 11.47370 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002086 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.431596 B =13420.442482 C =14323.660033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.611 5.611 3 C 0.121 3.879 4 C -0.143 4.143 5 C 0.160 3.840 6 N -0.757 5.757 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.592 3.408 16 O -0.545 6.545 17 C -0.289 4.289 18 C 0.058 3.942 19 N -0.301 5.301 20 N -0.356 5.356 21 C 0.160 3.840 22 C -0.132 4.132 23 C -0.115 4.115 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.133 4.133 27 C 0.128 3.872 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.208 0.792 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 -32.280 12.610 36.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.344 5.344 3 C -0.001 4.001 4 C -0.182 4.182 5 C 0.032 3.968 6 N -0.402 5.402 7 C -0.371 4.371 8 H 0.108 0.892 9 C -0.194 4.194 10 N -0.584 5.584 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.382 3.618 16 O -0.423 6.423 17 C -0.304 4.304 18 C -0.129 4.129 19 N -0.120 5.120 20 N -0.134 5.134 21 C 0.059 3.941 22 C -0.170 4.170 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.152 4.152 26 C -0.172 4.172 27 C -0.023 4.023 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.224 0.776 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.026 -33.088 12.664 37.748 hybrid contribution 0.148 0.068 -1.228 1.239 sum -12.878 -33.021 11.435 37.242 Atomic orbital electron populations 1.22271 0.80287 1.03665 1.01116 1.47604 1.06644 1.06110 1.74012 1.21502 0.97806 0.83229 0.97605 1.22126 1.00961 0.98881 0.96276 1.20527 0.96655 0.91995 0.87588 1.42711 1.69648 1.26204 1.01675 1.19088 1.27635 0.96819 0.93605 0.89173 1.24680 1.00564 0.97239 0.96910 1.69707 1.46267 1.23019 1.19389 0.86523 0.78388 0.80371 0.83161 1.21122 1.21740 1.20340 1.17259 0.86380 0.82481 0.75718 1.90787 1.13344 1.87290 1.50877 1.20242 0.93610 0.93663 1.22909 1.25210 0.95640 0.94545 0.97482 1.77193 1.04707 1.05670 1.24415 1.48769 1.04012 1.06733 1.53909 1.21457 1.00596 0.74375 0.97668 1.22004 1.03518 0.97143 0.94365 1.21503 0.98401 0.94112 1.01334 1.21622 0.98176 1.01333 0.95204 1.21476 1.02800 0.93822 0.97077 1.21980 0.96495 0.97545 1.01172 1.22863 0.95392 0.88520 0.95560 0.91568 0.90043 0.91546 0.90263 0.89495 0.91672 0.92045 0.95491 0.95360 0.80727 0.93131 0.77630 0.87664 0.90963 0.90766 0.91448 0.90994 0.91323 0.91480 0.91392 0.90787 0.90589 0.90529 0.79895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 8.55 59.84 0.51 1.07 16 2 N -0.61 -7.49 2.87 -182.85 -0.53 -8.01 16 3 C 0.12 1.63 5.39 -4.04 -0.02 1.61 16 4 C -0.14 -2.36 5.65 -26.73 -0.15 -2.51 16 5 C 0.16 3.24 6.26 -4.04 -0.03 3.21 16 6 N -0.76 -19.06 5.41 -59.91 -0.32 -19.39 16 7 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 9 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 10 N -0.94 -30.19 13.97 55.49 0.78 -29.41 16 11 Si 0.89 22.94 27.74 -169.99 -4.71 18.23 16 12 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 14 H -0.28 -6.86 6.52 56.52 0.37 -6.49 16 15 C 0.59 8.46 7.67 -12.52 -0.10 8.36 16 16 O -0.54 -9.76 16.47 5.28 0.09 -9.68 16 17 C -0.29 -3.42 6.04 -105.07 -0.63 -4.06 16 18 C 0.06 0.58 9.91 -16.98 -0.17 0.41 16 19 N -0.30 -3.24 12.50 30.86 0.39 -2.86 16 20 N -0.36 -3.33 3.50 -54.32 -0.19 -3.52 16 21 C 0.16 1.02 3.18 -67.93 -0.22 0.81 16 22 C -0.13 -0.77 5.53 -26.73 -0.15 -0.92 16 23 C -0.12 -0.47 5.92 -26.73 -0.16 -0.63 16 24 C -0.13 -0.46 5.92 -26.73 -0.16 -0.62 16 25 C -0.11 -0.41 5.92 -26.76 -0.16 -0.56 16 26 C -0.13 -0.66 4.83 -26.75 -0.13 -0.79 16 27 C 0.13 1.33 10.40 -16.56 -0.17 1.16 16 28 H 0.07 0.41 6.31 -51.93 -0.33 0.08 16 29 H 0.08 0.55 7.80 -51.92 -0.40 0.15 16 30 H 0.07 0.49 6.64 -51.93 -0.34 0.15 16 31 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 32 H 0.09 1.30 7.39 -51.93 -0.38 0.91 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.36 8.89 5.53 -40.82 -0.23 8.67 16 38 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 39 H 0.21 1.44 4.17 -52.48 -0.22 1.23 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.39 7.13 -51.93 -0.37 0.02 16 51 H 0.18 1.64 7.23 -52.49 -0.38 1.26 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -37.14 400.83 -9.02 -46.16 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.58 Total: 3.24 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.98 Total: -0.81 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 0.12 Total: -63.18 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.14 -9.02 -46.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569255019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.035 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds