Wall clock time and date at job start Tue Mar 31 2020 18:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99889 * 2 1 4 4 C 1.52999 * 109.46988 * 269.99495 * 3 2 1 5 5 C 1.52999 * 109.47260 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47272 * 179.97438 * 5 4 3 7 7 C 1.36931 * 120.00468 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99753 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00663 * 180.02562 * 7 6 5 10 10 N 1.31624 * 120.00333 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99537 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47187 * 90.00286 * 11 9 7 13 13 H 1.48502 * 109.46899 * 209.99764 * 11 9 7 14 14 H 1.48491 * 109.47270 * 329.99762 * 11 9 7 15 15 C 1.34779 * 120.00342 * 179.97438 * 2 1 3 16 16 O 1.21602 * 120.00367 * 181.99604 * 15 2 1 17 17 C 1.47427 * 119.99616 * 1.99815 * 15 2 1 18 18 C 1.41289 * 126.41563 * 353.83999 * 17 15 2 19 19 N 1.30449 * 108.02647 * 179.72327 * 18 17 15 20 20 N 1.39941 * 108.89153 * 0.44021 * 19 18 17 21 21 C 1.46498 * 125.75022 * 179.81220 * 20 19 18 22 22 C 1.53004 * 109.47275 * 94.69773 * 21 20 19 23 23 C 1.52997 * 109.47230 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.46913 * 299.99711 * 23 22 21 25 25 C 1.52994 * 109.47280 * 60.00295 * 24 23 22 26 26 C 1.53000 * 109.46884 * 214.69494 * 21 20 19 27 27 C 1.34257 * 108.49063 * 359.55254 * 20 19 18 28 28 H 1.09000 * 109.47670 * 240.16354 * 1 2 3 29 29 H 1.09009 * 109.47133 * 0.16960 * 1 2 3 30 30 H 1.09002 * 109.46856 * 120.16529 * 1 2 3 31 31 H 1.08997 * 109.47423 * 29.99579 * 3 2 1 32 32 H 1.09001 * 109.47266 * 149.99783 * 3 2 1 33 33 H 1.09004 * 109.47457 * 300.00435 * 4 3 2 34 34 H 1.09005 * 109.47302 * 59.99767 * 4 3 2 35 35 H 1.08997 * 109.47170 * 300.00095 * 5 4 3 36 36 H 1.09001 * 109.47248 * 60.00132 * 5 4 3 37 37 H 0.97001 * 119.99795 * 359.97438 * 6 5 4 38 38 H 0.96996 * 119.99683 * 179.97438 * 10 9 7 39 39 H 1.08005 * 125.99038 * 0.02562 * 18 17 15 40 40 H 1.08998 * 109.47539 * 334.69523 * 21 20 19 41 41 H 1.08998 * 109.47041 * 59.99445 * 22 21 20 42 42 H 1.09004 * 109.46407 * 299.99788 * 22 21 20 43 43 H 1.08998 * 109.47554 * 59.99768 * 23 22 21 44 44 H 1.08999 * 109.47001 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.47231 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.46829 * 299.99910 * 24 23 22 47 47 H 1.08998 * 109.47021 * 60.00045 * 25 24 23 48 48 H 1.08998 * 109.47391 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.47541 * 60.00545 * 26 21 20 50 50 H 1.09001 * 109.47290 * 299.99605 * 26 21 20 51 51 H 1.07997 * 126.28924 * 180.26202 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0351 -1.4426 6 7 3.4628 3.4576 -2.8238 7 6 4.1360 4.6234 -3.0741 8 1 4.4870 5.2313 -2.2532 9 6 4.3675 5.0240 -4.3829 10 7 5.0142 6.1449 -4.6234 11 14 3.7600 3.9730 -5.8026 12 1 2.3868 4.3952 -6.1788 13 1 4.6662 4.1422 -6.9669 14 1 3.7440 2.5464 -5.3910 15 6 2.1389 -1.1672 0.0005 16 8 3.3544 -1.1675 0.0372 17 6 1.4024 -2.4436 -0.0434 18 6 0.0011 -2.6064 0.0335 19 7 -0.2621 -3.8816 -0.0462 20 7 0.9411 -4.5860 -0.1660 21 6 1.0739 -6.0406 -0.2774 22 6 1.1548 -6.4339 -1.7539 23 6 1.2942 -7.9530 -1.8702 24 6 2.5671 -8.4049 -1.1516 25 6 2.4862 -8.0118 0.3248 26 6 2.3466 -6.4931 0.4413 27 6 1.9528 -3.7034 -0.1674 28 1 -0.3634 -0.5113 0.8914 29 1 -0.3634 1.0277 -0.0030 30 1 -0.3633 -0.5164 -0.8885 31 1 1.6084 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 3.0416 0.9507 -1.9563 34 1 1.5001 1.8406 -1.9565 35 1 2.6293 3.7949 -0.9287 36 1 4.1705 2.9044 -0.9288 37 1 3.1480 2.9114 -3.5610 38 1 5.1762 6.4246 -5.5379 39 1 -0.7254 -1.8137 0.1352 40 1 0.2085 -6.5206 0.1795 41 1 2.0203 -5.9539 -2.2107 42 1 0.2481 -6.1115 -2.2658 43 1 0.4290 -8.4333 -1.4132 44 1 1.3514 -8.2331 -2.9220 45 1 2.6666 -9.4871 -1.2348 46 1 3.4323 -7.9246 -1.6087 47 1 1.6211 -8.4921 0.7818 48 1 3.3933 -8.3333 0.8366 49 1 2.2890 -6.2131 1.4931 50 1 3.2121 -6.0132 -0.0157 51 1 3.0041 -3.9363 -0.2502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569255019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:41 Heat of formation + Delta-G solvation = 28.726410 kcal Electronic energy + Delta-G solvation = -28381.009579 eV Core-core repulsion = 24509.353272 eV Total energy + Delta-G solvation = -3871.656307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.61850 -40.56997 -39.24194 -37.58417 -36.51467 -34.48077 -33.88128 -32.26082 -31.90901 -31.20766 -29.94798 -28.17497 -27.08081 -25.07798 -23.92931 -23.75777 -22.89564 -22.45666 -21.74871 -20.72577 -20.31546 -19.65659 -18.53654 -17.37382 -17.19134 -16.72124 -16.53217 -16.09480 -15.98220 -15.88988 -15.60102 -15.54497 -15.11130 -15.03486 -14.82315 -14.44878 -14.09749 -14.05276 -13.93490 -13.76676 -13.50356 -13.47446 -13.27579 -12.84925 -12.76648 -12.56786 -12.51089 -12.35566 -12.19011 -12.10904 -12.03195 -11.83209 -11.76399 -11.58653 -11.44837 -11.29770 -10.98684 -10.86878 -10.56894 -9.84542 -9.54831 -9.32005 -8.04535 -5.38363 0.47442 1.15878 1.28849 1.35887 1.39582 1.47038 2.05926 2.42517 2.46714 3.26241 3.28905 3.58083 3.61091 3.66365 3.71509 3.82654 3.90803 4.03131 4.11624 4.13018 4.21238 4.24067 4.33986 4.36791 4.38269 4.43556 4.44496 4.53220 4.55676 4.67279 4.68370 4.77197 4.83114 4.90646 4.92882 4.94915 4.96951 5.09314 5.10947 5.24927 5.27783 5.28863 5.30051 5.39034 5.45225 5.61226 5.73626 5.83048 6.19740 6.42215 6.53515 7.05425 7.22909 7.81925 8.01056 9.16870 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002086 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.431596 B =13420.442482 C =14323.660033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.609 5.609 3 C 0.127 3.873 4 C -0.126 4.126 5 C 0.156 3.844 6 N -0.761 5.761 7 C -0.238 4.238 8 H 0.058 0.942 9 C -0.066 4.066 10 N -0.982 5.982 11 Si 0.959 3.041 12 H -0.272 1.272 13 H -0.294 1.294 14 H -0.259 1.259 15 C 0.586 3.414 16 O -0.595 6.595 17 C -0.311 4.311 18 C 0.068 3.932 19 N -0.320 5.320 20 N -0.351 5.351 21 C 0.156 3.844 22 C -0.127 4.127 23 C -0.111 4.111 24 C -0.125 4.125 25 C -0.110 4.110 26 C -0.129 4.129 27 C 0.128 3.872 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.040 0.960 36 H 0.017 0.983 37 H 0.365 0.635 38 H 0.259 0.741 39 H 0.234 0.766 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.267 -34.638 12.703 39.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.339 5.339 3 C 0.004 3.996 4 C -0.165 4.165 5 C 0.030 3.970 6 N -0.407 5.407 7 C -0.369 4.369 8 H 0.076 0.924 9 C -0.258 4.258 10 N -0.633 5.633 11 Si 0.785 3.215 12 H -0.198 1.198 13 H -0.220 1.220 14 H -0.184 1.184 15 C 0.377 3.623 16 O -0.477 6.477 17 C -0.326 4.326 18 C -0.119 4.119 19 N -0.139 5.139 20 N -0.128 5.128 21 C 0.056 3.944 22 C -0.165 4.165 23 C -0.149 4.149 24 C -0.162 4.162 25 C -0.148 4.148 26 C -0.168 4.168 27 C -0.025 4.025 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.035 0.965 37 H 0.197 0.803 38 H 0.068 0.932 39 H 0.250 0.750 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.505 -35.491 12.794 40.788 hybrid contribution 0.908 0.804 -1.161 1.679 sum -14.597 -34.687 11.633 39.390 Atomic orbital electron populations 1.22596 0.77414 1.05511 1.02670 1.47665 1.08403 1.04940 1.72926 1.21370 0.98058 0.84700 0.95516 1.21941 1.00450 0.95795 0.98327 1.20701 0.96914 0.94336 0.85076 1.42755 1.69162 1.24923 1.03866 1.19080 1.27185 0.97736 0.92887 0.92401 1.25554 1.01337 0.98842 1.00022 1.69888 1.48148 1.25214 1.20027 0.85356 0.78005 0.79250 0.78850 1.19779 1.22013 1.18399 1.17662 0.85979 0.83690 0.75005 1.90753 1.15468 1.88045 1.53408 1.20184 0.94533 0.93000 1.24922 1.25604 0.95184 0.94875 0.96220 1.77167 1.05499 1.06133 1.25148 1.49026 1.03390 1.07583 1.52808 1.21725 1.01543 0.72883 0.98277 1.21957 1.02452 0.98458 0.93676 1.21492 0.99049 0.92612 1.01769 1.21621 0.97617 1.01938 0.95043 1.21473 1.03526 0.92561 0.97209 1.21970 0.95552 0.98639 1.00639 1.23054 0.96019 0.88633 0.94833 0.89321 0.88144 0.90610 0.87067 0.91481 0.94018 0.90508 0.94177 0.96491 0.80254 0.93246 0.74998 0.87136 0.91871 0.91963 0.90623 0.90686 0.90241 0.92022 0.90590 0.90090 0.90925 0.90849 0.79193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 8.55 127.77 1.09 1.84 16 2 N -0.61 -13.80 2.87 -850.66 -2.44 -16.24 16 3 C 0.13 3.21 5.39 86.38 0.47 3.68 16 4 C -0.13 -3.97 5.65 30.59 0.17 -3.79 16 5 C 0.16 6.22 6.26 86.38 0.54 6.76 16 6 N -0.76 -37.85 5.41 -343.46 -1.86 -39.70 16 7 C -0.24 -14.24 10.47 84.03 0.88 -13.36 16 8 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 9 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 10 N -0.98 -64.61 13.97 21.65 0.30 -64.31 16 11 Si 0.96 47.21 27.74 68.60 1.90 49.12 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 13 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 14 H -0.26 -11.84 6.52 99.48 0.65 -11.19 16 15 C 0.59 16.46 7.67 86.66 0.66 17.12 16 16 O -0.59 -21.84 16.47 -4.04 -0.07 -21.91 16 17 C -0.31 -7.08 6.04 -20.15 -0.12 -7.21 16 18 C 0.07 1.21 9.91 85.65 0.85 2.06 16 19 N -0.32 -6.41 12.50 -56.27 -0.70 -7.11 16 20 N -0.35 -6.22 3.50 -325.76 -1.14 -7.36 16 21 C 0.16 1.83 3.18 44.99 0.14 1.97 16 22 C -0.13 -1.38 5.53 30.59 0.17 -1.21 16 23 C -0.11 -0.74 5.92 30.59 0.18 -0.56 16 24 C -0.12 -0.70 5.92 30.59 0.18 -0.52 16 25 C -0.11 -0.59 5.92 30.58 0.18 -0.41 16 26 C -0.13 -1.15 4.83 30.58 0.15 -1.00 16 27 C 0.13 2.60 10.40 84.28 0.88 3.48 16 28 H 0.09 0.75 6.31 -2.39 -0.02 0.74 16 29 H 0.10 0.93 7.80 -2.38 -0.02 0.91 16 30 H 0.08 0.86 6.64 -2.39 -0.02 0.84 16 31 H 0.11 2.12 7.92 -2.39 -0.02 2.10 16 32 H 0.07 1.99 7.39 -2.39 -0.02 1.98 16 33 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.36 17.37 5.53 -92.71 -0.51 16.85 16 38 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.23 2.51 4.17 -2.91 -0.01 2.50 16 40 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.08 0.31 8.14 -2.39 -0.02 0.30 16 48 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.07 0.70 7.13 -2.39 -0.02 0.69 16 51 H 0.19 3.45 7.23 -2.91 -0.02 3.43 16 Total: -1.00 -81.97 400.83 3.23 -78.74 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.35 Total: 23.50 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 6.89 Total: 5.27 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -5.84 Total: -134.73 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.07 Total: -21.91 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.90 Total: 49.12 kcal Total: -81.97 3.23 -78.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569255019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.467 kcal (2) G-P(sol) polarization free energy of solvation -81.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds