Wall clock time and date at job start Tue Mar 31 2020 18:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48493 * 109.47144 * 269.99568 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00085 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99516 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.09000 * 109.47217 * 54.99952 * 11 10 9 13 13 C 1.52995 * 109.47195 * 174.99817 * 11 10 9 14 14 C 1.53004 * 109.47195 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46787 * 300.00235 * 14 13 11 16 16 H 1.09001 * 109.47149 * 299.99381 * 15 14 13 17 17 C 1.53004 * 109.46787 * 179.97438 * 15 14 13 18 18 N 1.46498 * 109.46851 * 175.00074 * 17 15 14 19 19 C 1.34782 * 119.99771 * 179.97438 * 18 17 15 20 20 O 1.21279 * 120.00068 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99951 * 179.97438 * 19 18 17 22 22 C 1.52996 * 109.47462 * 179.97438 * 21 19 18 23 23 H 1.09005 * 115.54633 * 29.27664 * 22 21 19 24 24 C 1.53002 * 117.50255 * 243.61049 * 22 21 19 25 25 C 1.52992 * 59.99852 * 252.50710 * 24 22 21 26 26 H 1.09003 * 117.50631 * 107.48881 * 25 24 22 27 27 C 1.53002 * 117.49800 * 252.50666 * 25 24 22 28 28 C 1.53001 * 117.50175 * 197.24040 * 27 25 24 29 29 C 1.52991 * 60.00452 * 252.51334 * 28 27 25 30 30 C 1.52995 * 109.47445 * 59.99918 * 15 14 13 31 31 C 1.53000 * 109.46787 * 295.00051 * 11 10 9 32 32 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 34 34 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 36 36 H 1.08998 * 109.47557 * 300.00470 * 13 11 10 37 37 H 1.09001 * 109.47386 * 60.00224 * 13 11 10 38 38 H 1.09000 * 109.47217 * 60.00136 * 14 13 11 39 39 H 1.09003 * 109.47136 * 180.02562 * 14 13 11 40 40 H 1.09003 * 109.47052 * 294.99763 * 17 15 14 41 41 H 1.08992 * 109.47329 * 55.00209 * 17 15 14 42 42 H 0.97000 * 120.00554 * 359.97438 * 18 17 15 43 43 H 1.09003 * 109.46966 * 299.99815 * 21 19 18 44 44 H 1.09002 * 109.47206 * 59.99502 * 21 19 18 45 45 H 1.09000 * 117.49409 * 359.97438 * 24 22 21 46 46 H 1.08994 * 117.50226 * 144.99202 * 24 22 21 47 47 H 1.08999 * 115.54967 * 342.95409 * 27 25 24 48 48 H 1.09004 * 117.49523 * 0.02562 * 28 27 25 49 49 H 1.09003 * 117.49835 * 145.01966 * 28 27 25 50 50 H 1.09003 * 117.50042 * 252.51262 * 29 28 27 51 51 H 1.09004 * 117.52158 * 107.47716 * 29 28 27 52 52 H 1.09000 * 109.46927 * 59.99874 * 30 15 14 53 53 H 1.08998 * 109.47557 * 179.97438 * 30 15 14 54 54 H 1.09001 * 109.47149 * 299.99381 * 31 11 10 55 55 H 1.09003 * 109.47289 * 60.00086 * 31 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3798 -4.7090 -0.8523 13 6 1.8245 -6.1406 -0.1424 14 6 0.8303 -7.3035 -0.1475 15 6 0.0356 -7.3007 1.1599 16 1 0.7198 -7.4114 2.0012 17 6 -0.9591 -8.4633 1.1546 18 7 -1.6354 -8.5332 2.4522 19 6 -2.5612 -9.4861 2.6791 20 8 -2.8347 -10.2853 1.8089 21 6 -3.2566 -9.5584 4.0142 22 6 -4.2522 -10.7200 4.0085 23 1 -3.9925 -11.5586 3.3623 24 6 -5.7360 -10.3796 4.1620 25 6 -4.9779 -11.0350 5.3180 26 1 -4.7459 -10.4147 6.1838 27 6 -5.2835 -12.5033 5.6209 28 6 -4.8562 -13.0469 6.9857 29 6 -4.0979 -13.4649 5.7244 30 6 -0.7252 -5.9799 1.2916 31 6 0.2685 -4.8172 1.2963 32 1 -0.4849 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 2.6849 -3.7105 -0.8952 35 1 2.6843 -3.7187 0.8848 36 1 2.3911 -6.1423 -1.0736 37 1 2.5084 -6.2514 0.6991 38 1 0.1461 -7.1930 -0.9888 39 1 1.3723 -8.2446 -0.2408 40 1 -1.6973 -8.3063 0.3681 41 1 -0.4264 -9.3964 0.9718 42 1 -1.4170 -7.8938 3.1482 43 1 -2.5182 -9.7162 4.8003 44 1 -3.7888 -8.6250 4.1977 45 1 -6.0027 -9.3280 4.2674 46 1 -6.4524 -10.9940 3.6168 47 1 -6.2085 -12.8890 5.1923 48 1 -4.3577 -12.3583 7.6681 49 1 -5.5003 -13.7904 7.4554 50 1 -4.2431 -14.4834 5.3642 51 1 -3.1002 -13.0515 5.5763 52 1 -1.4094 -5.8693 0.4503 53 1 -1.2917 -5.9780 2.2228 54 1 0.9524 -4.9280 2.1378 55 1 -0.2735 -3.8761 1.3901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569864075.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:45 Heat of formation + Delta-G solvation = -33.837905 kcal Electronic energy + Delta-G solvation = -27977.927844 eV Core-core repulsion = 24207.098889 eV Total energy + Delta-G solvation = -3770.828956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.00134 -39.97704 -39.24772 -36.96057 -36.28045 -35.52015 -33.65177 -31.88337 -31.60215 -30.40228 -27.83299 -25.72238 -24.55327 -24.09627 -23.43565 -23.23309 -22.28850 -21.56142 -21.09660 -20.65986 -20.56854 -19.14126 -18.05727 -17.07068 -16.73190 -16.63014 -16.53267 -16.13497 -15.80160 -15.59758 -15.26626 -15.09507 -14.91774 -14.74169 -14.53996 -14.42180 -14.20416 -13.81765 -13.49820 -13.20079 -13.03390 -12.98941 -12.85045 -12.58693 -12.51724 -12.44014 -12.32607 -12.15302 -12.09547 -11.94126 -11.86104 -11.76658 -11.74723 -11.51317 -11.30946 -11.08902 -10.94125 -10.85409 -10.78701 -10.71758 -10.32077 -10.02815 -8.97657 -7.94843 -5.23020 1.46764 1.48631 1.57062 1.69642 2.22329 2.56303 2.70113 3.09581 3.38461 3.62582 3.66039 3.78106 3.79138 3.84045 3.86593 3.99947 4.03547 4.16509 4.23471 4.25094 4.33724 4.37125 4.43410 4.56397 4.56957 4.58258 4.61797 4.63660 4.67677 4.71195 4.78351 4.80616 4.81973 4.90230 4.95155 4.96318 5.05238 5.06934 5.10974 5.21986 5.25244 5.25790 5.28614 5.30447 5.31993 5.35086 5.40933 5.45351 5.47863 5.54674 5.61404 5.68432 6.27899 6.60489 7.30857 7.33966 8.11856 8.35108 9.28725 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.019868 B = 0.001599 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.930397 B =17507.432621 C =18377.855610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.744 5.744 10 C 0.153 3.847 11 C -0.086 4.086 12 H 0.052 0.948 13 C -0.102 4.102 14 C -0.106 4.106 15 C -0.084 4.084 16 H 0.091 0.909 17 C 0.129 3.871 18 N -0.720 5.720 19 C 0.510 3.490 20 O -0.588 6.588 21 C -0.104 4.104 22 C -0.142 4.142 23 H 0.092 0.908 24 C -0.174 4.174 25 C -0.108 4.108 26 H 0.120 0.880 27 C -0.137 4.137 28 C -0.168 4.168 29 C -0.184 4.184 30 C -0.105 4.105 31 C -0.103 4.103 32 H 0.251 0.749 33 H 0.374 0.626 34 H 0.013 0.987 35 H 0.019 0.981 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.414 0.586 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.094 0.906 51 H 0.091 0.909 52 H 0.051 0.949 53 H 0.073 0.927 54 H 0.063 0.937 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 -26.929 13.257 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.387 5.387 10 C 0.027 3.973 11 C -0.105 4.105 12 H 0.071 0.929 13 C -0.140 4.140 14 C -0.144 4.144 15 C -0.103 4.103 16 H 0.109 0.891 17 C 0.005 3.995 18 N -0.373 5.373 19 C 0.298 3.702 20 O -0.468 6.468 21 C -0.144 4.144 22 C -0.160 4.160 23 H 0.110 0.890 24 C -0.211 4.211 25 C -0.126 4.126 26 H 0.138 0.862 27 C -0.155 4.155 28 C -0.205 4.205 29 C -0.221 4.221 30 C -0.143 4.143 31 C -0.141 4.141 32 H 0.060 0.940 33 H 0.206 0.794 34 H 0.031 0.969 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.251 0.749 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.123 0.877 46 H 0.107 0.893 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.112 0.888 51 H 0.110 0.890 52 H 0.070 0.930 53 H 0.092 0.908 54 H 0.082 0.918 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.140 -27.392 12.643 31.002 hybrid contribution 0.010 1.558 -0.233 1.576 sum -7.130 -25.834 12.410 29.533 Atomic orbital electron populations 1.69822 1.06585 1.26005 1.59597 1.25559 0.96413 1.01060 1.03757 0.85138 0.77727 0.79475 0.77418 1.21481 1.22075 1.19429 1.19663 0.91480 0.85592 1.41146 0.90867 1.42602 1.05617 1.01181 1.89257 1.20891 0.94066 0.85177 0.97156 1.21235 0.96769 0.94458 0.98003 0.92919 1.21441 0.97671 0.92459 1.02426 1.21464 0.97697 0.98542 0.96677 1.21310 0.96387 0.92818 0.99783 0.89067 1.21312 0.94652 0.98441 0.85064 1.46020 1.40865 1.33451 1.16923 1.21151 0.78957 0.79733 0.90396 1.90679 1.65404 1.42477 1.48249 1.21268 0.98987 1.00102 0.94010 1.22049 0.93389 0.99900 1.00697 0.89001 1.23236 0.94159 1.01956 1.01740 1.21923 1.03655 0.94741 0.92320 0.86236 1.21816 0.99017 0.92846 1.01845 1.23054 1.03404 1.03586 0.90444 1.22989 0.96677 0.99679 1.02742 1.21538 0.97261 0.93494 1.02010 1.21409 0.97916 0.97763 0.97010 0.94048 0.79401 0.96895 0.96279 0.91683 0.91032 0.92240 0.89997 0.93005 0.91725 0.74865 0.86235 0.86735 0.87657 0.89291 0.87991 0.88031 0.88091 0.88755 0.89009 0.93002 0.90835 0.91778 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.78 13.06 21.65 0.28 -59.49 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -38.38 5.33 -343.44 -1.83 -40.21 16 10 C 0.15 6.17 5.65 86.38 0.49 6.65 16 11 C -0.09 -2.66 2.23 -10.79 -0.02 -2.68 16 12 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 13 C -0.10 -2.33 5.20 30.59 0.16 -2.17 16 14 C -0.11 -1.96 5.20 30.60 0.16 -1.80 16 15 C -0.08 -1.44 2.23 -10.79 -0.02 -1.47 16 16 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 17 C 0.13 2.33 5.06 86.38 0.44 2.77 16 18 N -0.72 -11.23 5.28 -463.06 -2.45 -13.68 16 19 C 0.51 9.85 7.83 87.66 0.69 10.53 16 20 O -0.59 -16.90 15.56 -3.03 -0.05 -16.95 16 21 C -0.10 -1.26 5.98 29.85 0.18 -1.08 16 22 C -0.14 -2.17 5.06 -10.80 -0.05 -2.23 16 23 H 0.09 1.95 7.30 -2.38 -0.02 1.94 16 24 C -0.17 -2.37 9.90 30.59 0.30 -2.07 16 25 C -0.11 -1.29 5.59 -10.80 -0.06 -1.35 16 26 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 27 C -0.14 -1.68 5.87 -10.79 -0.06 -1.74 16 28 C -0.17 -1.65 10.25 30.59 0.31 -1.34 16 29 C -0.18 -2.21 10.18 30.59 0.31 -1.90 16 30 C -0.11 -2.27 5.07 30.58 0.16 -2.11 16 31 C -0.10 -2.98 5.07 30.58 0.16 -2.83 16 32 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.37 20.47 6.85 -92.71 -0.64 19.83 16 34 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.41 4.29 7.66 -92.71 -0.71 3.58 16 43 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.11 0.97 7.87 -2.39 -0.02 0.95 16 45 H 0.11 1.20 8.03 -2.39 -0.02 1.19 16 46 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 47 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 49 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 50 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 52 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 53 H 0.07 1.33 7.18 -2.39 -0.02 1.32 16 54 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 55 H 0.04 1.36 7.18 -2.39 -0.02 1.35 16 Total: -1.00 -71.67 433.03 1.92 -69.76 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.50 Total: 34.05 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 4.43 Total: -21.93 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.99 Total: -113.39 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.05 Total: -16.95 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -71.67 1.92 -69.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569864075.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.918 kcal (2) G-P(sol) polarization free energy of solvation -71.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds