Wall clock time and date at job start Tue Mar 31 2020 18:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46993 * 2 1 4 4 C 1.52997 * 109.47477 * 119.99741 * 2 1 3 5 5 C 1.53002 * 109.47535 * 184.99759 * 4 2 1 6 6 N 1.46494 * 109.47001 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99635 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99925 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47259 * 294.99935 * 10 9 7 12 12 C 1.52992 * 109.47259 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47321 * 60.00048 * 12 11 10 14 14 C 1.52994 * 109.47025 * 59.99834 * 13 12 11 15 15 C 1.53004 * 109.47380 * 299.99984 * 14 13 12 16 16 C 1.52999 * 109.46707 * 60.00023 * 15 14 13 17 17 C 1.52999 * 109.47002 * 300.00457 * 15 14 13 18 18 C 1.52994 * 109.47426 * 59.99571 * 17 15 14 19 19 C 1.52999 * 109.46870 * 299.99675 * 13 12 11 20 20 N 1.46499 * 109.47252 * 240.00235 * 2 1 3 21 21 C 1.36935 * 120.00238 * 84.99532 * 20 2 1 22 22 H 1.08002 * 120.00281 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00036 * 179.97438 * 21 20 2 24 24 N 1.31621 * 120.00377 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99896 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47145 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.46661 * 120.00710 * 25 23 21 28 28 H 1.48500 * 109.47131 * 240.00436 * 25 23 21 29 29 H 1.08997 * 109.46674 * 299.99715 * 1 2 3 30 30 H 1.09000 * 109.46653 * 60.00261 * 1 2 3 31 31 H 1.08999 * 109.46504 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46889 * 65.00084 * 4 2 1 33 33 H 1.08996 * 109.47223 * 305.00863 * 4 2 1 34 34 H 1.09005 * 109.46767 * 60.00250 * 5 4 2 35 35 H 1.09002 * 109.47113 * 300.00590 * 5 4 2 36 36 H 0.96995 * 120.00292 * 0.27801 * 6 5 4 37 37 H 1.09004 * 109.46932 * 300.00223 * 9 7 6 38 38 H 1.08997 * 109.47392 * 59.99562 * 9 7 6 39 39 H 1.09006 * 109.47047 * 54.99685 * 10 9 7 40 40 H 1.08999 * 109.46411 * 59.99516 * 11 10 9 41 41 H 1.08998 * 109.47021 * 180.02562 * 12 11 10 42 42 H 1.09006 * 109.47047 * 299.99750 * 12 11 10 43 43 H 1.08998 * 109.47150 * 180.02562 * 13 12 11 44 44 H 1.09004 * 109.47000 * 180.02562 * 14 13 12 45 45 H 1.08998 * 109.47079 * 60.00139 * 14 13 12 46 46 H 1.09000 * 109.47223 * 179.97438 * 15 14 13 47 47 H 1.08998 * 109.47243 * 60.00157 * 16 15 14 48 48 H 1.09008 * 109.46881 * 180.02562 * 16 15 14 49 49 H 1.09004 * 109.47151 * 299.99516 * 17 15 14 50 50 H 1.08998 * 109.47132 * 179.97438 * 17 15 14 51 51 H 1.09007 * 109.47346 * 180.02562 * 18 17 15 52 52 H 1.09000 * 109.47670 * 299.99957 * 19 13 12 53 53 H 1.09004 * 109.47151 * 179.97438 * 19 13 12 54 54 H 0.97000 * 120.00157 * 264.99650 * 20 2 1 55 55 H 0.96996 * 120.00378 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0533 -1.3043 2.5095 7 6 5.3742 -1.3398 2.7751 8 8 6.1585 -0.7999 2.0238 9 6 5.8767 -2.0511 4.0049 10 6 7.4013 -1.9420 4.0701 11 6 8.0174 -2.6931 2.8880 12 6 9.5420 -2.5835 2.9527 13 6 10.0422 -3.1959 4.2626 14 6 9.6337 -4.6689 4.3256 15 6 8.1090 -4.7786 4.2609 16 6 7.6089 -4.1662 2.9510 17 6 7.4930 -4.0275 5.4429 18 6 7.9015 -2.5544 5.3799 19 6 9.4263 -2.4447 5.4447 20 7 2.0184 -0.6905 -1.1962 21 6 2.1491 -0.0074 -2.3758 22 1 1.8926 1.0405 -2.4242 23 6 2.6123 -0.6617 -3.5090 24 7 2.9255 -1.9387 -3.4500 25 14 2.7913 0.2704 -5.1180 26 1 2.3773 1.6828 -4.9206 27 1 4.2084 0.2275 -5.5598 28 1 1.9311 -0.3580 -6.1525 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2618 2.1369 34 1 3.8533 0.4371 1.3573 35 1 3.9995 -1.0727 0.4259 36 1 3.4264 -1.7395 3.1082 37 1 5.4417 -1.5927 4.8930 38 1 5.5888 -3.1015 3.9603 39 1 7.6927 -0.8926 4.0254 40 1 7.6613 -2.2565 1.9549 41 1 9.9808 -3.1182 2.1104 42 1 9.8330 -1.5340 2.9078 43 1 11.1284 -3.1173 4.3090 44 1 9.9897 -5.1051 5.2590 45 1 10.0725 -5.2040 3.4835 46 1 7.8180 -5.8281 4.3053 47 1 8.0477 -4.7013 2.1089 48 1 6.5225 -4.2440 2.9051 49 1 7.8493 -4.4638 6.3761 50 1 6.4068 -4.1052 5.3966 51 1 7.4630 -2.0194 6.2224 52 1 9.7173 -1.3953 5.3998 53 1 9.7822 -2.8813 6.3779 54 1 2.2491 -1.6317 -1.1527 55 1 3.2488 -2.3960 -4.2419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570474856.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:25 Heat of formation + Delta-G solvation = -91.319784 kcal Electronic energy + Delta-G solvation = -30178.952950 eV Core-core repulsion = 26405.631393 eV Total energy + Delta-G solvation = -3773.321557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.57696 -40.43590 -38.14768 -35.82317 -34.77131 -34.12757 -33.47221 -33.41918 -31.26747 -30.17128 -28.94585 -26.71650 -26.01910 -25.54302 -23.84108 -22.40445 -22.27843 -22.02866 -21.55209 -20.78633 -19.28108 -18.18294 -17.85210 -17.04498 -16.76739 -16.61418 -15.99459 -15.92965 -15.41130 -15.35108 -15.29816 -15.03140 -14.82680 -14.49121 -14.18292 -14.14907 -14.10260 -13.86947 -13.58008 -13.34876 -13.26826 -13.13985 -13.04352 -12.87008 -12.64738 -12.59566 -12.24994 -12.21470 -12.10365 -11.87461 -11.74272 -11.68868 -11.63645 -11.61411 -11.60507 -11.51810 -10.98658 -10.85749 -10.46318 -10.41952 -10.30306 -9.98700 -8.98665 -7.94048 -5.20624 1.43816 1.45467 1.54461 1.74817 2.30436 2.55561 3.40308 3.57703 3.61960 3.65491 3.91169 3.91598 4.02427 4.15965 4.17792 4.24469 4.26166 4.34565 4.36823 4.40651 4.43624 4.45384 4.47653 4.61512 4.65100 4.66477 4.70085 4.77177 4.80994 4.87902 4.91082 4.93969 4.98419 5.02860 5.07052 5.11458 5.17941 5.22011 5.22614 5.23573 5.27298 5.27825 5.31172 5.35815 5.39528 5.52579 5.53736 5.60337 5.61395 5.66811 5.71915 5.74304 6.29185 6.67987 7.34975 7.40443 8.13256 8.34329 9.29720 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.002502 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.148510 B =11190.337132 C =12203.173158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.134 3.866 6 N -0.718 5.718 7 C 0.499 3.501 8 O -0.587 6.587 9 C -0.130 4.130 10 C -0.055 4.055 11 C -0.089 4.089 12 C -0.108 4.108 13 C -0.084 4.084 14 C -0.105 4.105 15 C -0.084 4.084 16 C -0.111 4.111 17 C -0.106 4.106 18 C -0.076 4.076 19 C -0.106 4.106 20 N -0.735 5.735 21 C -0.231 4.231 22 H 0.073 0.927 23 C -0.079 4.079 24 N -0.970 5.970 25 Si 0.965 3.035 26 H -0.266 1.266 27 H -0.299 1.299 28 H -0.292 1.292 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.030 0.970 36 H 0.416 0.584 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.045 0.955 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.088 0.912 52 H 0.055 0.945 53 H 0.080 0.920 54 H 0.371 0.629 55 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.540 -5.405 27.292 29.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.371 5.371 7 C 0.287 3.713 8 O -0.467 6.467 9 C -0.169 4.169 10 C -0.074 4.074 11 C -0.107 4.107 12 C -0.146 4.146 13 C -0.103 4.103 14 C -0.143 4.143 15 C -0.102 4.102 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.094 4.094 19 C -0.143 4.143 20 N -0.376 5.376 21 C -0.363 4.363 22 H 0.091 0.909 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.795 3.205 26 H -0.190 1.190 27 H -0.226 1.226 28 H -0.219 1.219 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.253 0.747 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.106 0.894 52 H 0.073 0.927 53 H 0.098 0.902 54 H 0.203 0.797 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.072 -4.844 26.653 28.568 hybrid contribution 0.054 0.074 -1.878 1.880 sum 9.126 -4.770 24.776 26.830 Atomic orbital electron populations 1.22257 0.97051 1.01067 1.00874 1.20470 0.93210 0.95114 0.85762 0.94176 1.21899 0.92558 1.01981 0.98822 1.21020 0.95269 0.95895 0.86860 1.45985 1.07804 1.56580 1.26707 1.21558 0.81929 0.79782 0.88021 1.90687 1.56327 1.47848 1.51812 1.21907 0.97212 1.02534 0.95234 1.20796 0.92515 0.98831 0.95240 1.21097 0.95508 0.95729 0.98386 1.21508 0.95218 0.99857 0.97981 1.21052 0.99454 0.95531 0.94240 1.21526 0.95395 0.95387 1.01952 1.21058 0.95500 0.99380 0.94264 1.21593 1.00263 0.94947 0.98018 1.21599 1.00857 0.94040 0.97870 1.21092 0.95789 0.96677 0.95889 1.21530 0.94891 0.99860 0.98031 1.42656 1.78366 1.10226 1.06322 1.19629 1.34191 0.94042 0.88449 0.90872 1.25490 1.03371 0.96896 1.01348 1.69812 1.53028 1.10167 1.29116 0.85175 0.76578 0.78346 0.80356 1.19024 1.22650 1.21950 0.90538 0.94896 0.93588 0.91041 0.87652 0.93580 0.95149 0.74712 0.85885 0.86779 0.92925 0.93687 0.93281 0.93450 0.91047 0.90456 0.92890 0.90529 0.93602 0.92316 0.90304 0.90807 0.89419 0.92663 0.90182 0.79687 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.49 71.98 0.68 -4.35 16 2 C 0.16 6.15 2.89 44.99 0.13 6.28 16 3 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 4 C -0.11 -3.29 4.87 30.59 0.15 -3.14 16 5 C 0.13 4.55 5.56 86.38 0.48 5.03 16 6 N -0.72 -18.40 5.56 -463.05 -2.57 -20.97 16 7 C 0.50 14.29 7.55 87.66 0.66 14.95 16 8 O -0.59 -23.42 13.96 -3.03 -0.04 -23.46 16 9 C -0.13 -2.34 4.47 29.85 0.13 -2.20 16 10 C -0.05 -1.12 1.58 -10.79 -0.02 -1.14 16 11 C -0.09 -2.23 2.46 -10.79 -0.03 -2.26 16 12 C -0.11 -2.48 5.19 30.59 0.16 -2.32 16 13 C -0.08 -1.40 3.19 -10.79 -0.03 -1.44 16 14 C -0.11 -1.55 5.19 30.59 0.16 -1.39 16 15 C -0.08 -1.26 3.20 -10.79 -0.03 -1.29 16 16 C -0.11 -2.37 4.92 30.59 0.15 -2.22 16 17 C -0.11 -1.23 4.92 30.59 0.15 -1.08 16 18 C -0.08 -1.04 2.72 -10.79 -0.03 -1.07 16 19 C -0.11 -1.49 5.19 30.60 0.16 -1.33 16 20 N -0.73 -36.98 4.57 -322.94 -1.48 -38.45 16 21 C -0.23 -13.07 9.93 84.03 0.83 -12.24 16 22 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 24 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 25 Si 0.97 47.99 29.55 68.60 2.03 50.02 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 28 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.03 1.35 7.75 -2.39 -0.02 1.34 16 36 H 0.42 7.01 8.47 -92.71 -0.79 6.23 16 37 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.11 1.70 4.83 -2.39 -0.01 1.68 16 39 H 0.05 1.32 7.96 -2.38 -0.02 1.31 16 40 H 0.04 1.56 5.95 -2.39 -0.01 1.55 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.06 1.25 6.32 -2.38 -0.02 1.24 16 49 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.73 6.54 -2.39 -0.02 0.71 16 51 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 52 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 54 H 0.37 20.21 7.80 -92.71 -0.72 19.49 16 55 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -74.97 403.25 1.75 -73.22 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.64 Total: 36.03 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 4.17 Total: -15.43 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -3.77 Total: -120.37 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.04 Total: -23.46 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -74.97 1.75 -73.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570474856.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.098 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds