Wall clock time and date at job start Tue Mar 31 2020 18:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52994 * 109.47404 * 175.00005 * 4 2 1 6 6 C 1.52997 * 109.47404 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.47484 * 180.02562 * 6 5 4 8 8 C 1.36939 * 120.00213 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00468 * 359.97438 * 8 7 6 10 10 C 1.38821 * 119.99696 * 179.97438 * 8 7 6 11 11 N 1.31615 * 120.00414 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99617 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47368 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47214 * 120.00070 * 12 10 8 15 15 H 1.48505 * 109.47095 * 239.99849 * 12 10 8 16 16 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 17 17 C 1.34779 * 119.99793 * 274.99565 * 16 2 1 18 18 O 1.21279 * 120.00185 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99614 * 179.97438 * 17 16 2 20 20 C 1.52998 * 109.47376 * 300.00172 * 19 17 16 21 21 C 1.53002 * 109.47053 * 179.97438 * 20 19 17 22 22 C 1.53006 * 109.46912 * 60.00417 * 21 20 19 23 23 C 1.52995 * 109.47375 * 59.99514 * 22 21 20 24 24 C 1.53002 * 109.47498 * 300.00127 * 23 22 21 25 25 C 1.52995 * 109.46974 * 300.00207 * 20 19 17 26 26 C 1.53002 * 109.47003 * 300.00368 * 24 23 22 27 27 C 1.52995 * 109.47294 * 59.99508 * 26 24 23 28 28 C 1.52998 * 109.46921 * 299.99663 * 22 21 20 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 33 33 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 34 34 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 35 35 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 36 36 H 1.09000 * 109.47325 * 300.00168 * 6 5 4 37 37 H 1.08995 * 109.47630 * 59.99990 * 6 5 4 38 38 H 0.97004 * 120.00171 * 359.97438 * 7 6 5 39 39 H 0.96998 * 120.00440 * 179.97438 * 11 10 8 40 40 H 0.97004 * 120.00223 * 94.99655 * 16 2 1 41 41 H 1.09002 * 109.46795 * 60.00420 * 19 17 16 42 42 H 1.08999 * 109.46966 * 59.99899 * 20 19 17 43 43 H 1.09002 * 109.47099 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47232 * 300.00262 * 21 20 19 45 45 H 1.09001 * 109.46909 * 179.97438 * 22 21 20 46 46 H 1.08999 * 109.47023 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.46954 * 60.00225 * 23 22 21 48 48 H 1.08993 * 109.47232 * 179.97438 * 24 23 22 49 49 H 1.09002 * 109.46954 * 180.02562 * 25 20 19 50 50 H 1.09001 * 109.47464 * 59.99922 * 25 20 19 51 51 H 1.09005 * 109.46374 * 299.99468 * 26 24 23 52 52 H 1.09001 * 109.47039 * 179.97438 * 26 24 23 53 53 H 1.09002 * 109.46954 * 180.02562 * 27 26 24 54 54 H 1.09002 * 109.47361 * 300.00402 * 28 22 21 55 55 H 1.09000 * 109.47480 * 179.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0747 -1.3341 -2.5633 7 7 5.5347 -1.2313 -2.6247 8 6 6.2184 -1.8048 -3.6635 9 1 5.6813 -2.3332 -4.4372 10 6 7.6019 -1.7069 -3.7219 11 7 8.2565 -1.0624 -2.7793 12 14 8.5344 -2.4885 -5.1392 13 1 7.5740 -3.1485 -6.0597 14 1 9.2858 -1.4403 -5.8754 15 1 9.4850 -3.4988 -4.6090 16 7 2.0183 -0.6906 1.1962 17 6 2.1471 -0.0182 2.3571 18 8 1.8583 1.1584 2.4117 19 6 2.6489 -0.7288 3.5877 20 6 1.7043 -1.8823 3.9314 21 6 2.2141 -2.6041 5.1804 22 6 2.2662 -1.6212 6.3519 23 6 0.8640 -1.0701 6.6179 24 6 0.3541 -0.3483 5.3689 25 6 0.3019 -1.3312 4.1969 26 6 1.2988 0.8052 5.0252 27 6 2.7010 0.2540 4.7591 28 6 3.2107 -0.4678 6.0082 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9994 -1.0729 -0.4259 36 1 3.7863 -2.3844 -2.5201 37 1 3.6401 -0.8743 -3.4508 38 1 6.0172 -0.7564 -1.9300 39 1 9.2232 -0.9943 -2.8199 40 1 2.2490 -1.6318 1.1526 41 1 3.6480 -1.1214 3.3985 42 1 1.6675 -2.5827 3.0970 43 1 1.5409 -3.4256 5.4256 44 1 3.2131 -2.9967 4.9909 45 1 2.6290 -2.1356 7.2418 46 1 0.9010 -0.3703 7.4528 47 1 0.1910 -1.8919 6.8628 48 1 -0.6450 0.0439 5.5584 49 1 -0.3709 -2.1530 4.4422 50 1 -0.0611 -0.8173 3.3068 51 1 1.3358 1.5053 5.8598 52 1 0.9358 1.3191 4.1351 53 1 3.3740 1.0758 4.5147 54 1 4.2098 -0.8604 5.8186 55 1 3.2475 0.2327 6.8425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571270133.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:58 Heat of formation + Delta-G solvation = -91.732175 kcal Electronic energy + Delta-G solvation = -30433.036660 eV Core-core repulsion = 26659.697220 eV Total energy + Delta-G solvation = -3773.339440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.75607 -40.21900 -37.91613 -36.50693 -34.41567 -33.78407 -33.51006 -33.32926 -32.20537 -30.78316 -27.46702 -27.19995 -26.72170 -24.84957 -23.37512 -22.50151 -22.34593 -22.27499 -21.70601 -21.20420 -19.14226 -18.79190 -17.68638 -17.12762 -16.62040 -16.36460 -16.05717 -15.81306 -15.45760 -15.39246 -15.23923 -15.05827 -14.87411 -14.39116 -14.29542 -14.21398 -14.19969 -13.79024 -13.61622 -13.43598 -13.34267 -13.28135 -13.15566 -12.99217 -12.81086 -12.39334 -12.27901 -12.16200 -12.04731 -11.87504 -11.82694 -11.76171 -11.72883 -11.69250 -11.63005 -11.49188 -11.04113 -10.95368 -10.57549 -10.54784 -10.22330 -9.95321 -9.01852 -7.96800 -5.26296 1.46440 1.47694 1.57927 1.73014 2.29175 2.54933 3.36980 3.51088 3.56656 3.60023 3.66420 3.96687 4.03075 4.10207 4.15526 4.19224 4.24117 4.29863 4.33250 4.36858 4.40770 4.43350 4.46777 4.50359 4.58318 4.61078 4.68939 4.80259 4.81781 4.85291 4.86277 4.86856 4.93448 4.97441 5.00620 5.09230 5.11416 5.14591 5.16951 5.20984 5.22560 5.24178 5.31214 5.35023 5.38995 5.42355 5.49700 5.52018 5.59138 5.61546 5.64056 5.73389 6.25803 6.64036 7.31173 7.36135 8.08202 8.30323 9.27228 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.002408 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.306727 B =11625.397118 C =12546.184440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.060 0.940 4 C -0.109 4.109 5 C -0.111 4.111 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.077 0.923 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.264 1.264 14 H -0.294 1.294 15 H -0.291 1.291 16 N -0.715 5.715 17 C 0.519 3.481 18 O -0.576 6.576 19 C -0.098 4.098 20 C -0.071 4.071 21 C -0.105 4.105 22 C -0.086 4.086 23 C -0.103 4.103 24 C -0.085 4.085 25 C -0.106 4.106 26 C -0.117 4.117 27 C -0.065 4.065 28 C -0.107 4.107 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.026 0.974 37 H 0.019 0.981 38 H 0.371 0.629 39 H 0.251 0.749 40 H 0.409 0.591 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.043 0.957 51 H 0.054 0.946 52 H 0.062 0.938 53 H 0.049 0.951 54 H 0.065 0.935 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.482 -3.565 20.389 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.150 4.150 6 C 0.024 3.976 7 N -0.393 5.393 8 C -0.377 4.377 9 H 0.095 0.905 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.188 1.188 14 H -0.221 1.221 15 H -0.218 1.218 16 N -0.367 5.367 17 C 0.307 3.693 18 O -0.456 6.456 19 C -0.119 4.119 20 C -0.090 4.090 21 C -0.142 4.142 22 C -0.104 4.104 23 C -0.141 4.141 24 C -0.104 4.104 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.084 4.084 28 C -0.144 4.144 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.037 0.963 38 H 0.203 0.797 39 H 0.060 0.940 40 H 0.245 0.755 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.062 0.938 51 H 0.073 0.927 52 H 0.081 0.919 53 H 0.068 0.932 54 H 0.084 0.916 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.708 -2.837 20.231 29.089 hybrid contribution 1.323 0.047 -0.717 1.506 sum -19.384 -2.789 19.514 27.646 Atomic orbital electron populations 1.22066 0.93962 1.02888 1.02061 1.20902 0.94637 0.96340 0.84119 0.92223 1.21741 0.93516 1.02206 0.97226 1.21576 0.96521 0.99541 0.97315 1.20852 0.83142 0.97422 0.96158 1.42671 1.02562 1.65955 1.28160 1.19712 0.90015 1.26322 1.01701 0.90479 1.25637 0.97548 1.02472 1.01480 1.69833 1.07058 1.48890 1.36481 0.85036 0.78456 0.77357 0.78689 1.18835 1.22086 1.21829 1.46109 1.66855 1.14480 1.09214 1.20968 0.76332 0.86808 0.85161 1.90601 1.51789 1.17833 1.85334 1.21401 1.01176 0.97275 0.92035 1.21033 0.93872 0.94679 0.99398 1.21553 1.01866 0.97472 0.93346 1.21081 0.95236 0.95537 0.98528 1.21524 0.96258 0.99817 0.96469 1.21056 0.98372 0.95303 0.95646 1.21544 0.96401 0.98824 0.97608 1.21689 0.94821 0.97552 1.01331 1.20762 0.97343 0.96226 0.94043 1.21565 0.98838 0.97601 0.96413 0.93892 0.90666 0.90897 0.89366 0.89378 0.93834 0.92370 0.95560 0.96339 0.79731 0.93989 0.75457 0.88278 0.89702 0.90179 0.91236 0.89882 0.91975 0.90919 0.91597 0.90316 0.93784 0.92686 0.91918 0.93235 0.91638 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.48 71.98 0.68 -2.12 16 2 C 0.14 3.22 2.57 44.99 0.12 3.34 16 3 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 4 C -0.11 -2.38 4.75 30.59 0.15 -2.24 16 5 C -0.11 -3.49 5.22 30.59 0.16 -3.33 16 6 C 0.15 5.93 6.26 86.38 0.54 6.47 16 7 N -0.75 -39.19 5.60 -343.47 -1.92 -41.11 16 8 C -0.25 -13.97 9.99 84.04 0.84 -13.13 16 9 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 10 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 11 N -0.97 -60.64 13.06 21.65 0.28 -60.35 16 12 Si 0.98 46.50 29.55 68.60 2.03 48.52 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 15 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 16 N -0.71 -15.07 4.42 -442.53 -1.96 -17.03 16 17 C 0.52 12.83 5.61 87.66 0.49 13.32 16 18 O -0.58 -18.57 13.32 -3.03 -0.04 -18.61 16 19 C -0.10 -1.91 2.28 -11.54 -0.03 -1.93 16 20 C -0.07 -1.03 2.63 -10.79 -0.03 -1.05 16 21 C -0.11 -1.23 5.19 30.60 0.16 -1.08 16 22 C -0.09 -1.06 3.19 -10.79 -0.03 -1.10 16 23 C -0.10 -1.30 5.19 30.59 0.16 -1.14 16 24 C -0.09 -1.39 3.20 -10.77 -0.03 -1.42 16 25 C -0.11 -1.64 4.98 30.61 0.15 -1.49 16 26 C -0.12 -2.46 4.90 30.59 0.15 -2.31 16 27 C -0.06 -1.34 2.36 -10.79 -0.03 -1.36 16 28 C -0.11 -1.67 5.19 30.59 0.16 -1.51 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.84 7.75 -2.38 -0.02 1.82 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.37 20.77 7.67 -92.71 -0.71 20.06 16 39 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.41 6.91 8.02 -92.71 -0.74 6.17 16 41 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 1.04 7.56 -2.39 -0.02 1.02 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 50 H 0.04 0.84 7.22 -2.39 -0.02 0.82 16 51 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 52 H 0.06 1.71 5.51 -2.39 -0.01 1.69 16 53 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 54 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 55 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -70.52 406.03 1.86 -68.66 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -0.60 Total: 36.17 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 4.07 Total: -16.26 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -3.60 Total: -118.49 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.04 Total: -18.61 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.52 1.86 -68.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571270133.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.072 kcal (2) G-P(sol) polarization free energy of solvation -70.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds