Wall clock time and date at job start Tue Mar 31 2020 19:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48499 * 109.47208 * 269.13497 * 3 2 1 5 5 H 1.48502 * 109.47443 * 29.13708 * 3 2 1 6 6 H 1.48497 * 109.47399 * 149.13510 * 3 2 1 7 7 C 1.39026 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00363 * 339.16871 * 7 2 1 9 9 N 1.36902 * 119.99971 * 159.17435 * 7 2 1 10 10 C 1.46506 * 119.99563 * 324.51527 * 9 7 2 11 11 C 1.50701 * 109.46904 * 265.96530 * 10 9 7 12 12 O 1.20818 * 120.00524 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99383 * 180.02562 * 11 10 9 14 14 C 1.34773 * 120.00217 * 144.51687 * 9 7 2 15 15 O 1.21613 * 119.99714 * 185.25152 * 14 9 7 16 16 C 1.47537 * 119.99693 * 5.25977 * 14 9 7 17 17 C 1.39760 * 120.13129 * 320.63407 * 16 14 9 18 18 C 1.37866 * 119.87370 * 180.02562 * 17 16 14 19 19 Cl 1.73600 * 119.93323 * 180.02562 * 18 17 16 20 20 C 1.38841 * 120.13824 * 359.97438 * 18 17 16 21 21 F 1.35097 * 119.86715 * 180.02562 * 20 18 17 22 22 C 1.38550 * 120.25893 * 0.02562 * 20 18 17 23 23 C 1.38021 * 120.13127 * 359.67595 * 22 20 18 24 24 Cl 1.73596 * 120.07573 * 180.31888 * 23 22 20 25 25 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46584 * 145.96696 * 10 9 7 27 27 H 1.09000 * 109.47147 * 25.96326 * 10 9 7 28 28 H 0.96699 * 116.99264 * 179.97438 * 13 11 10 29 29 H 1.08002 * 120.06410 * 359.97438 * 17 16 14 30 30 H 1.08007 * 119.93180 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.5136 2.0358 -1.3999 5 1 1.4363 2.6579 0.6817 6 1 3.5361 1.4456 0.7182 7 6 2.0089 -1.2040 0.0005 8 1 1.5219 -2.1086 0.3335 9 7 3.3108 -1.2430 -0.4210 10 6 3.7514 -0.3788 -1.5189 11 6 3.6628 -1.1348 -2.8196 12 8 3.2713 -2.2777 -2.8287 13 8 4.0188 -0.5381 -3.9681 14 6 4.1872 -2.0763 0.1741 15 8 5.3631 -2.0432 -0.1343 16 6 3.7198 -3.0286 1.1994 17 6 2.7532 -2.6386 2.1305 18 6 2.3206 -3.5327 3.0867 19 17 1.1195 -3.0502 4.2435 20 6 2.8429 -4.8185 3.1257 21 9 2.4148 -5.6903 4.0648 22 6 3.8014 -5.2110 2.2055 23 6 4.2378 -4.3268 1.2397 24 17 5.4328 -4.8227 0.0823 25 1 -0.4850 0.8400 -0.0004 26 1 4.7827 -0.0707 -1.3473 27 1 3.1119 0.5026 -1.5666 28 1 3.9451 -1.0632 -4.7768 29 1 2.3464 -1.6386 2.1015 30 1 4.2044 -6.2125 2.2410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068981.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:26 Heat of formation + Delta-G solvation = -143.506667 kcal Electronic energy + Delta-G solvation = -24561.528805 eV Core-core repulsion = 20323.876131 eV Total energy + Delta-G solvation = -4237.652675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 334.996 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.18893 -41.80894 -40.84527 -39.39234 -37.89937 -37.29771 -37.21453 -36.75298 -34.06832 -32.62454 -31.70573 -29.74712 -27.14964 -24.85011 -24.36529 -23.05258 -21.30506 -19.85637 -19.27747 -18.87802 -18.69033 -18.12338 -17.35029 -17.04747 -16.94327 -16.86068 -16.51771 -16.10083 -15.63421 -15.14776 -15.02162 -14.73351 -14.54499 -14.39289 -14.08271 -13.98495 -13.56713 -13.51405 -12.93961 -12.86664 -12.58748 -12.31247 -12.17097 -12.06333 -11.98814 -11.85846 -11.70047 -11.19473 -10.69394 -10.18063 -9.98270 -9.74887 -8.54553 -6.19368 -0.60309 -0.21603 0.75140 0.96318 1.17356 1.18165 1.34437 1.45119 1.51007 1.86250 2.13305 2.32821 2.45808 2.80587 2.98313 3.42460 3.64053 3.83502 3.92617 4.11433 4.20531 4.28798 4.36477 4.63812 4.72042 4.90043 5.15951 5.30918 5.57917 5.93753 6.09453 6.79604 6.98273 7.16833 7.49704 8.56806 Molecular weight = 335.00amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.006308 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.363589 B = 4437.664120 C = 6309.079318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.035 3.965 3 Si 0.907 3.093 4 H -0.244 1.244 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.356 4.356 8 H 0.089 0.911 9 N -0.445 5.445 10 C 0.091 3.909 11 C 0.471 3.529 12 O -0.533 6.533 13 O -0.508 6.508 14 C 0.528 3.472 15 O -0.578 6.578 16 C -0.113 4.113 17 C -0.017 4.017 18 C -0.088 4.088 19 Cl -0.037 7.037 20 C 0.140 3.860 21 F -0.114 7.114 22 C -0.136 4.136 23 C 0.024 3.976 24 Cl -0.033 7.033 25 H 0.285 0.715 26 H 0.133 0.867 27 H 0.118 0.882 28 H 0.425 0.575 29 H 0.168 0.832 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 -3.421 2.594 7.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.172 4.172 3 Si 0.731 3.269 4 H -0.170 1.170 5 H -0.203 1.203 6 H -0.172 1.172 7 C -0.482 4.482 8 H 0.107 0.893 9 N -0.165 5.165 10 C -0.033 4.033 11 C 0.312 3.688 12 O -0.422 6.422 13 O -0.321 6.321 14 C 0.319 3.681 15 O -0.462 6.462 16 C -0.117 4.117 17 C -0.036 4.036 18 C -0.116 4.116 19 Cl -0.008 7.008 20 C 0.119 3.881 21 F -0.093 7.093 22 C -0.155 4.155 23 C -0.005 4.005 24 Cl -0.003 7.003 25 H 0.095 0.905 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.287 0.713 29 H 0.186 0.814 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.830 -3.401 2.803 7.308 hybrid contribution -0.446 0.238 -0.572 0.763 sum 5.384 -3.163 2.231 6.631 Atomic orbital electron populations 1.69800 1.07553 1.29767 1.43945 1.25841 0.95590 1.00986 0.94768 0.86494 0.80498 0.79957 0.79959 1.17029 1.20320 1.17167 1.19039 0.85877 0.96551 1.46763 0.89327 1.43242 1.09874 1.36691 1.26723 1.21620 1.05030 0.94099 0.82585 1.24119 0.72378 0.85640 0.86662 1.90678 1.43618 1.20332 1.87564 1.84478 1.79789 1.49705 1.18157 1.18016 0.84956 0.82889 0.82266 1.90689 1.16688 1.72046 1.66809 1.19672 0.99488 0.93956 0.98594 1.21620 0.91313 1.01456 0.89252 1.20964 0.98892 0.94313 0.97452 1.98381 1.53857 1.91649 1.56913 1.17229 0.95775 0.85887 0.89204 1.91562 1.88215 1.67549 1.61939 1.20951 0.98461 1.02271 0.93801 1.20786 0.93671 0.92661 0.93340 1.98395 1.53948 1.90576 1.57388 0.90493 0.84964 0.86457 0.71314 0.81437 0.79379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.32 13.95 21.68 0.30 -44.02 16 2 C 0.04 1.66 5.32 84.95 0.45 2.11 16 3 Si 0.91 35.28 25.09 68.60 1.72 37.00 16 4 H -0.24 -8.64 6.40 99.48 0.64 -8.00 16 5 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 7 C -0.36 -17.08 7.04 84.09 0.59 -16.48 16 8 H 0.09 4.65 6.24 -2.91 -0.02 4.63 16 9 N -0.45 -20.00 1.75 -643.20 -1.12 -21.12 16 10 C 0.09 3.62 4.65 85.63 0.40 4.02 16 11 C 0.47 18.39 8.37 71.24 0.60 18.98 16 12 O -0.53 -24.59 17.11 21.99 0.38 -24.21 16 13 O -0.51 -14.69 13.42 -51.44 -0.69 -15.38 16 14 C 0.53 23.43 6.87 86.70 0.60 24.03 16 15 O -0.58 -26.52 14.90 -4.07 -0.06 -26.58 16 16 C -0.11 -4.48 5.35 -20.07 -0.11 -4.59 16 17 C -0.02 -0.64 7.42 22.55 0.17 -0.47 16 18 C -0.09 -2.89 6.32 22.33 0.14 -2.75 16 19 Cl -0.04 -1.14 28.60 -2.72 -0.08 -1.21 16 20 C 0.14 4.07 7.28 22.49 0.16 4.24 16 21 F -0.11 -3.06 16.82 44.97 0.76 -2.31 16 22 C -0.14 -3.76 9.79 22.29 0.22 -3.54 16 23 C 0.02 0.82 6.33 22.60 0.14 0.96 16 24 Cl -0.03 -1.11 26.81 -2.72 -0.07 -1.18 16 25 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 26 H 0.13 4.77 7.48 -2.39 -0.02 4.75 16 27 H 0.12 4.54 2.90 -2.39 -0.01 4.53 16 28 H 0.43 8.10 9.10 -74.06 -0.67 7.42 16 29 H 0.17 6.78 6.03 -2.91 -0.02 6.76 16 30 H 0.19 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -59.77 301.94 5.01 -54.76 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.52 Total: 17.76 kcal Atomic # 6 Polarization: 23.15 SS G_CDS: 3.36 Total: 26.51 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -0.82 Total: -65.15 kcal Atomic # 8 Polarization: -65.80 SS G_CDS: -0.38 Total: -66.17 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.76 Total: -2.31 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 1.72 Total: 37.00 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.15 Total: -2.40 kcal Total: -59.77 5.01 -54.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068981.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.751 kcal (2) G-P(sol) polarization free energy of solvation -59.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds