Wall clock time and date at job start Tue Mar 31 2020 18:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99707 * 2 1 4 4 C 1.50696 * 109.47393 * 293.95409 * 3 2 1 5 5 H 1.07995 * 120.00044 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00158 * 179.97438 * 4 3 2 7 7 N 1.31523 * 120.00163 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00264 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47008 * 90.00009 * 8 6 4 10 10 H 1.48506 * 109.47300 * 210.00393 * 8 6 4 11 11 H 1.48503 * 109.46887 * 330.00079 * 8 6 4 12 12 C 1.46898 * 110.99990 * 123.95467 * 2 1 3 13 13 C 1.52996 * 109.47214 * 66.04924 * 12 2 1 14 14 H 1.08999 * 109.47148 * 304.99846 * 13 12 2 15 15 O 1.42895 * 109.47392 * 64.99797 * 13 12 2 16 16 C 1.52994 * 109.47023 * 185.00204 * 13 12 2 17 17 N 1.46904 * 109.47167 * 179.97438 * 16 13 12 18 18 C 1.46902 * 111.00393 * 179.97438 * 17 16 13 19 19 H 1.09003 * 109.46888 * 34.99883 * 18 17 16 20 20 C 1.53002 * 109.47134 * 275.00318 * 18 17 16 21 21 F 1.39894 * 109.47276 * 173.97455 * 20 18 17 22 22 F 1.39901 * 109.46825 * 293.97509 * 20 18 17 23 23 C 1.52999 * 109.47051 * 155.00065 * 18 17 16 24 24 C 1.52994 * 109.46926 * 300.72533 * 23 18 17 25 25 C 1.52999 * 109.46926 * 179.97438 * 24 23 18 26 26 C 1.52998 * 109.47028 * 60.00512 * 25 24 23 27 27 C 1.52997 * 109.47126 * 299.99993 * 26 25 24 28 28 C 1.52999 * 109.47162 * 60.00089 * 27 26 25 29 29 H 1.09002 * 109.47051 * 296.04431 * 1 2 3 30 30 H 1.09000 * 109.47065 * 56.04337 * 1 2 3 31 31 H 1.09002 * 109.46950 * 176.04552 * 1 2 3 32 32 H 1.09004 * 109.47109 * 53.95611 * 3 2 1 33 33 H 1.09005 * 109.47285 * 173.95190 * 3 2 1 34 34 H 0.97000 * 119.99871 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47262 * 306.04525 * 12 2 1 36 36 H 1.09003 * 109.46955 * 186.05235 * 12 2 1 37 37 H 0.96698 * 114.00007 * 59.99810 * 15 13 12 38 38 H 1.08994 * 109.47826 * 59.99964 * 16 13 12 39 39 H 1.09007 * 109.47340 * 299.99136 * 16 13 12 40 40 H 1.00897 * 110.99797 * 303.95200 * 17 16 13 41 41 H 1.09000 * 109.47511 * 53.97162 * 20 18 17 42 42 H 1.08995 * 109.46917 * 60.73039 * 23 18 17 43 43 H 1.09000 * 109.46875 * 60.00828 * 24 23 18 44 44 H 1.08995 * 109.47735 * 300.00005 * 24 23 18 45 45 H 1.09000 * 109.47490 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.47614 * 300.00252 * 25 24 23 47 47 H 1.09002 * 109.47049 * 59.99912 * 26 25 24 48 48 H 1.09002 * 109.47408 * 179.97438 * 26 25 24 49 49 H 1.09002 * 109.47091 * 299.99894 * 27 26 25 50 50 H 1.09002 * 109.47122 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.46995 * 180.02562 * 28 27 26 52 52 H 1.08997 * 109.47614 * 60.00231 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5116 -2.0484 6 6 2.0266 3.3495 -1.5284 7 7 2.7118 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1376 9 1 0.2692 4.8674 -2.9951 10 1 2.6236 5.1890 -3.4789 11 1 1.4984 3.1719 -4.2179 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5533 -2.3389 0.8432 15 8 2.2956 -2.7695 -0.1800 16 6 2.0700 -3.0198 2.2130 17 7 1.7200 -4.4375 2.0527 18 6 2.1275 -5.2168 3.2294 19 1 2.0081 -4.6093 4.1266 20 6 3.5935 -5.6300 3.0848 21 9 4.0211 -6.2522 4.2626 22 9 3.7235 -6.5203 2.0135 23 6 1.2535 -6.4677 3.3403 24 6 -0.2142 -6.0547 3.4668 25 6 -1.0882 -7.3056 3.5771 26 6 -0.6761 -8.1084 4.8126 27 6 0.7917 -8.5213 4.6863 28 6 1.6657 -7.2704 4.5760 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5610 1.9274 0.8310 33 1 3.0797 1.3445 0.1083 34 1 2.9863 4.9182 -0.7768 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6610 1.1756 37 1 3.2602 -2.7166 -0.1360 38 1 1.5634 -2.6180 3.0905 39 1 3.1483 -2.9236 2.3401 40 1 0.7341 -4.5480 1.8692 41 1 4.2036 -4.7461 2.8987 42 1 1.3829 -7.0814 2.4489 43 1 -0.5079 -5.4832 2.5864 44 1 -0.3435 -5.4410 4.3582 45 1 -2.1340 -7.0115 3.6667 46 1 -0.9589 -7.9191 2.6855 47 1 -0.8055 -7.4950 5.7043 48 1 -1.2991 -8.9994 4.8915 49 1 0.9211 -9.1348 3.7946 50 1 1.0852 -9.0937 5.5663 51 1 2.7114 -7.5646 4.4855 52 1 1.5364 -6.6570 5.4676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647564349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:48 Heat of formation + Delta-G solvation = -167.886680 kcal Electronic energy + Delta-G solvation = -30264.071656 eV Core-core repulsion = 25933.200380 eV Total energy + Delta-G solvation = -4330.871277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.217 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.18294 -47.07040 -39.50746 -38.18665 -36.23263 -35.17869 -32.54708 -31.99369 -31.10160 -29.54917 -28.10033 -27.06782 -25.81794 -24.05652 -23.19367 -22.71611 -21.43263 -20.90893 -20.17002 -20.11060 -17.84324 -17.59529 -16.71400 -16.50817 -16.28261 -15.77334 -15.54562 -15.24277 -14.90414 -14.64133 -14.51657 -14.31692 -14.26899 -13.92719 -13.73960 -13.52379 -13.41220 -13.38939 -12.97677 -12.71171 -12.61874 -12.25991 -12.12165 -12.05965 -11.90367 -11.54748 -11.46200 -11.35806 -11.28793 -11.11740 -10.91775 -10.78002 -10.76999 -10.70642 -10.47210 -10.31432 -10.09853 -9.99326 -9.59806 -9.12820 -8.77063 -8.44961 -7.23000 -6.03921 -4.04908 3.31610 3.36032 3.37865 3.43238 3.73274 3.97658 4.07295 4.35784 4.41118 4.44472 4.57104 4.63239 4.73751 4.76961 4.88962 4.96112 5.02673 5.03956 5.10837 5.15984 5.16887 5.22125 5.28055 5.31611 5.33894 5.48153 5.50539 5.54303 5.60255 5.70377 5.77776 5.79454 5.83286 5.91544 6.00044 6.01144 6.12473 6.14176 6.24893 6.34569 6.58283 6.73076 6.98446 7.24375 7.29668 7.78884 8.01422 8.10960 8.18061 8.53247 9.03076 9.59399 11.07015 Molecular weight = 334.22amu Principal moments of inertia in cm(-1) A = 0.022096 B = 0.002121 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.869457 B =13199.448523 C =13858.810644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.025 3.975 13 C 0.117 3.883 14 H 0.094 0.906 15 O -0.534 6.534 16 C 0.020 3.980 17 N -0.668 5.668 18 C 0.044 3.956 19 H 0.072 0.928 20 C 0.272 3.728 21 F -0.204 7.204 22 F -0.194 7.194 23 C -0.090 4.090 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.130 4.130 29 H 0.008 0.992 30 H 0.075 0.925 31 H 0.046 0.954 32 H -0.011 1.011 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.369 0.631 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.355 0.645 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.061 0.939 51 H 0.085 0.915 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -23.940 13.668 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.105 4.105 13 C 0.057 3.943 14 H 0.111 0.889 15 O -0.337 6.337 16 C -0.110 4.110 17 N -0.303 5.303 18 C -0.068 4.068 19 H 0.090 0.910 20 C 0.217 3.783 21 F -0.185 7.185 22 F -0.175 7.175 23 C -0.108 4.108 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.168 4.168 29 H 0.026 0.974 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.006 0.994 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.215 0.785 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.178 0.822 41 H 0.123 0.877 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.103 0.897 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.100 -24.267 12.702 27.566 hybrid contribution -0.471 1.460 0.936 1.797 sum -3.570 -22.808 13.639 26.813 Atomic orbital electron populations 1.22261 0.89055 0.99511 1.00435 1.62025 1.06768 1.17475 1.39049 1.19744 0.95282 0.81542 0.96637 1.21163 1.34686 0.96829 1.01694 0.91774 1.25003 0.95314 0.97375 0.97056 1.69962 1.38482 1.11429 1.34150 0.86486 0.77946 0.79205 0.83728 1.20774 1.21264 1.19689 1.22724 1.00608 0.93785 0.93391 1.21858 0.97668 0.90682 0.84116 0.88871 1.86608 1.22928 1.83812 1.40392 1.22912 1.01599 0.87745 0.98719 1.60183 1.25113 1.08636 1.36352 1.22542 0.93381 0.96664 0.94202 0.91046 1.21784 0.96957 0.87953 0.71601 1.92880 1.91228 1.84941 1.49450 1.92981 1.96918 1.71362 1.56221 1.21302 0.94220 0.95027 1.00293 1.21622 0.94069 0.97992 1.01762 1.21488 0.98968 0.96477 0.98528 1.21556 0.96394 0.99718 0.98152 1.21514 0.94765 0.97453 1.01789 1.21949 1.01252 0.96580 0.96985 0.97385 0.90608 0.93530 0.99350 0.95348 0.92956 0.95540 0.91084 0.78524 0.94057 0.90679 0.82209 0.87713 0.89293 0.91644 0.91947 0.91904 0.91728 0.92144 0.92166 0.91955 0.92033 0.89718 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.14 60.07 0.55 1.24 16 2 N -0.53 -11.24 4.70 -244.37 -1.15 -12.39 16 3 C 0.19 5.00 4.72 -4.98 -0.02 4.97 16 4 C -0.51 -14.23 8.46 -34.44 -0.29 -14.53 16 5 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.02 0.41 4.59 -3.83 -0.02 0.39 16 13 C 0.12 1.56 3.13 -26.74 -0.08 1.48 16 14 H 0.09 1.29 6.34 -51.93 -0.33 0.96 16 15 O -0.53 -8.09 13.15 -35.23 -0.46 -8.55 16 16 C 0.02 0.20 5.15 -3.83 -0.02 0.18 16 17 N -0.67 -6.31 6.17 -106.72 -0.66 -6.96 16 18 C 0.04 0.36 1.94 -67.71 -0.13 0.23 16 19 H 0.07 0.56 7.80 -51.93 -0.40 0.15 16 20 C 0.27 2.48 4.90 37.16 0.18 2.66 16 21 F -0.20 -1.95 14.09 2.25 0.03 -1.92 16 22 F -0.19 -2.22 16.56 2.25 0.04 -2.19 16 23 C -0.09 -0.71 1.74 -90.62 -0.16 -0.86 16 24 C -0.12 -0.82 4.96 -26.73 -0.13 -0.95 16 25 C -0.12 -0.78 5.92 -26.73 -0.16 -0.93 16 26 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 27 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 28 C -0.13 -0.99 4.48 -26.73 -0.12 -1.11 16 29 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 31 H 0.05 0.77 6.37 -51.93 -0.33 0.44 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 37 H 0.37 4.65 9.05 45.56 0.41 5.06 16 38 H 0.04 0.38 8.05 -51.93 -0.42 -0.03 16 39 H 0.07 0.70 7.35 -51.92 -0.38 0.31 16 40 H 0.35 3.26 6.12 -39.29 -0.24 3.02 16 41 H 0.11 0.82 7.34 -51.93 -0.38 0.44 16 42 H 0.09 0.83 7.64 -51.93 -0.40 0.44 16 43 H 0.07 0.46 6.19 -51.93 -0.32 0.14 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.08 0.74 5.45 -51.93 -0.28 0.45 16 52 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -31.06 400.52 -9.68 -40.74 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.41 Total: 2.22 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -0.82 Total: -7.70 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -1.07 Total: -45.33 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.46 Total: -8.55 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.07 Total: -4.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.06 -9.68 -40.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647564349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.148 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds