Wall clock time and date at job start Tue Mar 31 2020 18:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99707 * 2 1 4 4 C 1.50696 * 109.47393 * 293.95409 * 3 2 1 5 5 H 1.07995 * 120.00044 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00158 * 179.97438 * 4 3 2 7 7 N 1.31523 * 120.00163 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00264 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47008 * 90.00009 * 8 6 4 10 10 H 1.48506 * 109.47300 * 210.00393 * 8 6 4 11 11 H 1.48503 * 109.46887 * 330.00079 * 8 6 4 12 12 C 1.46898 * 110.99990 * 123.95467 * 2 1 3 13 13 C 1.52996 * 109.47214 * 66.04924 * 12 2 1 14 14 H 1.08999 * 109.47148 * 304.99846 * 13 12 2 15 15 O 1.42895 * 109.47392 * 64.99797 * 13 12 2 16 16 C 1.52994 * 109.47023 * 185.00204 * 13 12 2 17 17 N 1.46904 * 109.47167 * 179.97438 * 16 13 12 18 18 C 1.46902 * 111.00393 * 179.97438 * 17 16 13 19 19 H 1.09003 * 109.46888 * 34.99883 * 18 17 16 20 20 C 1.53002 * 109.47134 * 275.00318 * 18 17 16 21 21 F 1.39894 * 109.47276 * 173.97455 * 20 18 17 22 22 F 1.39901 * 109.46825 * 293.97509 * 20 18 17 23 23 C 1.52999 * 109.47051 * 155.00065 * 18 17 16 24 24 C 1.52994 * 109.46926 * 300.72533 * 23 18 17 25 25 C 1.52999 * 109.46926 * 179.97438 * 24 23 18 26 26 C 1.52998 * 109.47028 * 60.00512 * 25 24 23 27 27 C 1.52997 * 109.47126 * 299.99993 * 26 25 24 28 28 C 1.52999 * 109.47162 * 60.00089 * 27 26 25 29 29 H 1.09002 * 109.47051 * 296.04431 * 1 2 3 30 30 H 1.09000 * 109.47065 * 56.04337 * 1 2 3 31 31 H 1.09002 * 109.46950 * 176.04552 * 1 2 3 32 32 H 1.09004 * 109.47109 * 53.95611 * 3 2 1 33 33 H 1.09005 * 109.47285 * 173.95190 * 3 2 1 34 34 H 0.97000 * 119.99871 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.47262 * 306.04525 * 12 2 1 36 36 H 1.09003 * 109.46955 * 186.05235 * 12 2 1 37 37 H 0.96698 * 114.00007 * 59.99810 * 15 13 12 38 38 H 1.08994 * 109.47826 * 59.99964 * 16 13 12 39 39 H 1.09007 * 109.47340 * 299.99136 * 16 13 12 40 40 H 1.00897 * 110.99797 * 303.95200 * 17 16 13 41 41 H 1.09000 * 109.47511 * 53.97162 * 20 18 17 42 42 H 1.08995 * 109.46917 * 60.73039 * 23 18 17 43 43 H 1.09000 * 109.46875 * 60.00828 * 24 23 18 44 44 H 1.08995 * 109.47735 * 300.00005 * 24 23 18 45 45 H 1.09000 * 109.47490 * 180.02562 * 25 24 23 46 46 H 1.08997 * 109.47614 * 300.00252 * 25 24 23 47 47 H 1.09002 * 109.47049 * 59.99912 * 26 25 24 48 48 H 1.09002 * 109.47408 * 179.97438 * 26 25 24 49 49 H 1.09002 * 109.47091 * 299.99894 * 27 26 25 50 50 H 1.09002 * 109.47122 * 180.02562 * 27 26 25 51 51 H 1.09000 * 109.46995 * 180.02562 * 28 27 26 52 52 H 1.08997 * 109.47614 * 60.00231 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5116 -2.0484 6 6 2.0266 3.3495 -1.5284 7 7 2.7118 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1376 9 1 0.2692 4.8674 -2.9951 10 1 2.6236 5.1890 -3.4789 11 1 1.4984 3.1719 -4.2179 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 1 0.5533 -2.3389 0.8432 15 8 2.2956 -2.7695 -0.1800 16 6 2.0700 -3.0198 2.2130 17 7 1.7200 -4.4375 2.0527 18 6 2.1275 -5.2168 3.2294 19 1 2.0081 -4.6093 4.1266 20 6 3.5935 -5.6300 3.0848 21 9 4.0211 -6.2522 4.2626 22 9 3.7235 -6.5203 2.0135 23 6 1.2535 -6.4677 3.3403 24 6 -0.2142 -6.0547 3.4668 25 6 -1.0882 -7.3056 3.5771 26 6 -0.6761 -8.1084 4.8126 27 6 0.7917 -8.5213 4.6863 28 6 1.6657 -7.2704 4.5760 29 1 -0.3633 0.4512 0.9233 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5610 1.9274 0.8310 33 1 3.0797 1.3445 0.1083 34 1 2.9863 4.9182 -0.7768 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6610 1.1756 37 1 3.2602 -2.7166 -0.1360 38 1 1.5634 -2.6180 3.0905 39 1 3.1483 -2.9236 2.3401 40 1 0.7341 -4.5480 1.8692 41 1 4.2036 -4.7461 2.8987 42 1 1.3829 -7.0814 2.4489 43 1 -0.5079 -5.4832 2.5864 44 1 -0.3435 -5.4410 4.3582 45 1 -2.1340 -7.0115 3.6667 46 1 -0.9589 -7.9191 2.6855 47 1 -0.8055 -7.4950 5.7043 48 1 -1.2991 -8.9994 4.8915 49 1 0.9211 -9.1348 3.7946 50 1 1.0852 -9.0937 5.5663 51 1 2.7114 -7.5646 4.4855 52 1 1.5364 -6.6570 5.4676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647564349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:47 Heat of formation + Delta-G solvation = -189.805759 kcal Electronic energy + Delta-G solvation = -30265.022139 eV Core-core repulsion = 25933.200380 eV Total energy + Delta-G solvation = -4331.821759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.217 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.93830 -47.85360 -40.19356 -39.33046 -37.43249 -36.29399 -34.61124 -32.78515 -31.67891 -30.69185 -29.21367 -28.65029 -27.18059 -25.37177 -23.99999 -23.46436 -22.60524 -21.93093 -21.42131 -20.69689 -18.57952 -18.56329 -18.32820 -17.48571 -17.26627 -17.00129 -16.70671 -16.31846 -15.96824 -15.94415 -15.47923 -15.36862 -15.06627 -14.94299 -14.73699 -14.60667 -14.31228 -14.25057 -14.15803 -13.83642 -13.56469 -13.29320 -13.25600 -13.04877 -12.81100 -12.78337 -12.70828 -12.59007 -12.52006 -12.39252 -12.16125 -12.01657 -11.97688 -11.88119 -11.59935 -11.38107 -11.35116 -11.04089 -10.69719 -10.62107 -10.61156 -9.49593 -8.94631 -8.21007 -6.30570 1.40818 1.42215 1.54173 2.39876 2.61203 2.96862 3.11455 3.33521 3.35588 3.43885 3.73554 3.79035 3.86228 3.92067 3.99955 4.06359 4.13785 4.28281 4.30615 4.39194 4.40847 4.45133 4.47683 4.55810 4.60765 4.61784 4.66158 4.67351 4.73295 4.75764 4.78548 4.98211 5.07059 5.14629 5.15654 5.17891 5.22593 5.25130 5.27465 5.32159 5.37816 5.43675 5.56274 5.64802 5.85145 6.05640 6.26256 6.32962 6.65094 6.85683 7.05503 7.39120 8.89775 Molecular weight = 334.22amu Principal moments of inertia in cm(-1) A = 0.022096 B = 0.002121 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.869457 B =13199.448523 C =13858.810644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.542 5.542 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.024 3.976 13 C 0.129 3.871 14 H 0.092 0.908 15 O -0.554 6.554 16 C 0.031 3.969 17 N -0.674 5.674 18 C 0.049 3.951 19 H 0.084 0.916 20 C 0.266 3.734 21 F -0.207 7.207 22 F -0.209 7.209 23 C -0.084 4.084 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.127 4.127 29 H 0.012 0.988 30 H 0.053 0.947 31 H 0.077 0.923 32 H -0.039 1.039 33 H 0.004 0.996 34 H 0.264 0.736 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.378 0.622 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.357 0.643 41 H 0.120 0.880 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.073 0.927 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.147 -24.657 13.925 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.191 1.191 12 C -0.105 4.105 13 C 0.069 3.931 14 H 0.110 0.890 15 O -0.359 6.359 16 C -0.099 4.099 17 N -0.310 5.310 18 C -0.062 4.062 19 H 0.102 0.898 20 C 0.211 3.789 21 F -0.188 7.188 22 F -0.191 7.191 23 C -0.103 4.103 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.156 4.156 27 C -0.155 4.155 28 C -0.165 4.165 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.096 0.904 32 H -0.021 1.021 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.226 0.774 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.181 0.819 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.091 0.909 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.960 -25.012 12.970 28.451 hybrid contribution -0.184 1.623 0.899 1.865 sum -4.144 -23.389 13.869 27.506 Atomic orbital electron populations 1.22238 0.87864 1.01111 0.99657 1.61924 1.07967 1.14866 1.41808 1.19383 0.93647 0.83947 0.94830 1.21469 1.34719 0.97433 1.02466 0.92154 1.25908 0.95067 0.98092 1.00683 1.70079 1.39384 1.11866 1.36156 0.85396 0.77985 0.78075 0.79246 1.19759 1.20680 1.19102 1.22844 1.00396 0.95303 0.91986 1.21731 0.97476 0.88671 0.85233 0.88999 1.86573 1.23967 1.83802 1.41543 1.22726 1.02314 0.87678 0.97166 1.60114 1.25420 1.08277 1.37149 1.22510 0.92807 0.96729 0.94129 0.89803 1.22051 0.97887 0.87936 0.71019 1.92876 1.91320 1.85075 1.49535 1.92949 1.97041 1.72020 1.57071 1.21227 0.94842 0.94626 0.99625 1.21600 0.93362 0.98209 1.01971 1.21494 0.99282 0.96281 0.98437 1.21543 0.95969 1.00006 0.98090 1.21512 0.95120 0.97097 1.01777 1.21898 1.00684 0.96920 0.96954 0.96966 0.92796 0.90414 1.02103 0.97784 0.92695 0.94785 0.91291 0.77430 0.92666 0.89717 0.81935 0.86251 0.90960 0.91589 0.91477 0.91254 0.92256 0.91873 0.91543 0.92536 0.91500 0.90902 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.14 127.69 1.17 2.67 16 2 N -0.54 -22.96 4.70 -927.04 -4.36 -27.32 16 3 C 0.21 11.05 4.72 85.56 0.40 11.45 16 4 C -0.52 -29.86 8.46 25.60 0.22 -29.64 16 5 H 0.06 3.42 7.12 -2.91 -0.02 3.40 16 6 C 0.00 0.02 5.46 84.65 0.46 0.48 16 7 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 8 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 C 0.02 0.77 4.59 86.30 0.40 1.16 16 13 C 0.13 3.20 3.13 30.59 0.10 3.30 16 14 H 0.09 2.32 6.34 -2.39 -0.02 2.30 16 15 O -0.55 -15.98 13.15 -148.98 -1.96 -17.94 16 16 C 0.03 0.54 5.15 86.30 0.44 0.98 16 17 N -0.67 -11.34 6.17 -491.56 -3.03 -14.37 16 18 C 0.05 0.73 1.94 44.92 0.09 0.81 16 19 H 0.08 1.07 7.80 -2.39 -0.02 1.05 16 20 C 0.27 4.48 4.90 71.98 0.35 4.83 16 21 F -0.21 -3.72 14.09 44.97 0.63 -3.09 16 22 F -0.21 -4.67 16.56 44.97 0.74 -3.92 16 23 C -0.08 -1.22 1.74 -10.79 -0.02 -1.24 16 24 C -0.11 -1.40 4.96 30.59 0.15 -1.25 16 25 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 26 C -0.12 -1.32 5.92 30.59 0.18 -1.14 16 27 C -0.12 -1.49 5.92 30.59 0.18 -1.30 16 28 C -0.13 -1.79 4.48 30.60 0.14 -1.65 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 2.26 6.76 -2.39 -0.02 2.24 16 31 H 0.08 2.44 6.37 -2.39 -0.02 2.43 16 32 H -0.04 -2.22 8.12 -2.39 -0.02 -2.24 16 33 H 0.00 0.23 7.93 -2.38 -0.02 0.21 16 34 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 36 H 0.07 2.22 7.93 -2.39 -0.02 2.20 16 37 H 0.38 9.10 9.05 -74.06 -0.67 8.43 16 38 H 0.06 0.85 8.05 -2.39 -0.02 0.83 16 39 H 0.08 1.35 7.35 -2.38 -0.02 1.33 16 40 H 0.36 5.80 6.12 -89.70 -0.55 5.26 16 41 H 0.12 1.65 7.34 -2.39 -0.02 1.63 16 42 H 0.07 1.31 7.64 -2.39 -0.02 1.29 16 43 H 0.07 0.81 6.19 -2.39 -0.01 0.80 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.07 1.22 5.45 -2.39 -0.01 1.20 16 52 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -66.76 400.52 -1.53 -68.29 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -0.31 Total: 19.37 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.44 Total: -11.73 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -7.11 Total: -97.56 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -1.96 Total: -17.94 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 1.38 Total: -7.01 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.76 -1.53 -68.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647564349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.516 kcal (2) G-P(sol) polarization free energy of solvation -66.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds