Wall clock time and date at job start Tue Mar 31 2020 18:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46957 * 110.99794 * 2 1 4 4 C 1.53058 * 109.36567 * 183.19153 * 3 2 1 5 5 N 1.46961 * 109.36300 * 301.60230 * 4 3 2 6 6 C 1.46896 * 110.99728 * 183.18816 * 5 4 3 7 7 H 1.09002 * 109.47220 * 54.99816 * 6 5 4 8 8 C 1.52997 * 109.46848 * 174.99746 * 6 5 4 9 9 C 1.52999 * 109.47317 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47159 * 300.00546 * 9 8 6 11 11 H 1.09001 * 109.46812 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.46798 * 299.99542 * 10 9 8 13 13 C 1.46897 * 110.99854 * 205.00212 * 12 10 9 14 14 C 1.53008 * 109.47153 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.46857 * 54.99715 * 14 13 12 16 16 C 1.47196 * 109.46839 * 294.99604 * 14 13 12 17 17 N 8.99629 * 136.79598 * 152.36116 * 2 1 3 18 18 C 1.52998 * 109.47019 * 174.99842 * 14 13 12 19 19 C 1.50702 * 109.47096 * 184.99739 * 18 14 13 20 20 H 1.08003 * 120.00024 * 0.02562 * 19 18 14 21 21 C 1.37872 * 120.00033 * 179.97438 * 19 18 14 22 22 N 1.31518 * 120.00381 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99946 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46990 * 60.00467 * 23 21 19 25 25 H 1.48504 * 109.47041 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47215 * 300.00199 * 23 21 19 27 27 C 1.52997 * 109.47452 * 59.99536 * 10 9 8 28 28 C 1.53000 * 109.47053 * 294.99460 * 6 5 4 29 29 C 1.46958 * 110.87800 * 59.31699 * 5 4 3 30 30 C 1.46950 * 111.00570 * 123.80292 * 2 1 3 31 31 H 1.08998 * 109.47569 * 60.00083 * 1 2 3 32 32 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47061 * 299.99441 * 1 2 3 34 34 H 1.09001 * 109.48689 * 63.22544 * 3 2 1 35 35 H 1.08995 * 109.49138 * 303.15925 * 3 2 1 36 36 H 1.08997 * 109.48875 * 181.63446 * 4 3 2 37 37 H 1.08997 * 109.50276 * 61.57638 * 4 3 2 38 38 H 1.08996 * 109.47853 * 300.00000 * 8 6 5 39 39 H 1.09002 * 109.47153 * 60.00028 * 8 6 5 40 40 H 1.09002 * 109.46716 * 60.00091 * 9 8 6 41 41 H 1.09000 * 109.47486 * 180.02562 * 9 8 6 42 42 H 1.00899 * 111.00323 * 328.95514 * 12 10 9 43 43 H 1.08995 * 109.47393 * 300.00160 * 13 12 10 44 44 H 1.09006 * 109.47616 * 60.00192 * 13 12 10 45 45 H 1.09002 * 109.47192 * 305.00083 * 18 14 13 46 46 H 1.08999 * 109.47159 * 65.00404 * 18 14 13 47 47 H 0.96998 * 120.00077 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.46695 * 59.99734 * 27 10 9 49 49 H 1.08993 * 109.47194 * 179.97438 * 27 10 9 50 50 H 1.08992 * 109.47399 * 300.00238 * 28 6 5 51 51 H 1.09004 * 109.46724 * 60.00724 * 28 6 5 52 52 H 1.08993 * 109.49010 * 60.65115 * 29 5 4 53 53 H 1.09008 * 109.48343 * 180.71093 * 29 5 4 54 54 H 1.09006 * 109.48972 * 296.77694 * 30 2 1 55 55 H 1.08997 * 109.49228 * 56.84226 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3292 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.5191 0.5660 1.0595 7 1 5.8824 1.5935 1.0380 8 6 6.0291 -0.1290 2.3236 9 6 7.5591 -0.1295 2.3233 10 6 8.0686 -0.8770 1.0893 11 1 9.1586 -0.8769 1.0889 12 7 7.5786 -2.2615 1.1185 13 6 8.4618 -3.1489 0.3502 14 6 7.9197 -4.5787 0.4033 15 1 6.8861 -4.5884 0.0574 16 6 7.9785 -5.0745 1.7880 17 7 8.0265 -5.4561 2.8571 18 6 8.7675 -5.4793 -0.4973 19 6 8.1617 -6.8585 -0.5416 20 1 7.2618 -7.0713 0.0163 21 6 8.7558 -7.8484 -1.2954 22 7 9.8513 -7.5892 -1.9753 23 14 8.0045 -9.5578 -1.3510 24 1 6.6242 -9.4744 -1.8922 25 1 8.8274 -10.4319 -2.2250 26 1 7.9651 -10.1260 0.0204 27 6 7.5586 -0.1820 -0.1747 28 6 6.0290 -0.1813 -0.1743 29 6 3.5234 -0.8061 1.0596 30 6 1.9957 -0.7632 1.1399 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.6937 1.8773 0.9174 35 1 1.6012 1.9129 -0.8602 36 1 3.9177 2.3449 -0.0513 37 1 3.8255 0.8483 -1.0107 38 1 5.6659 0.4033 3.2027 39 1 5.6658 -1.1564 2.3451 40 1 7.9227 0.8979 2.3016 41 1 7.9225 -0.6250 3.2236 42 1 7.4743 -2.5882 2.0675 43 1 8.5011 -2.8139 -0.6862 44 1 9.4639 -3.1238 0.7784 45 1 8.7964 -5.0625 -1.5040 46 1 9.7806 -5.5401 -0.0999 47 1 10.2694 -8.2857 -2.5053 48 1 7.9222 0.8453 -0.1963 49 1 7.9219 -0.7143 -1.0537 50 1 5.6658 -1.2086 -0.1528 51 1 5.6656 0.3139 -1.0749 52 1 3.8253 -1.3114 0.1422 53 1 3.9179 -1.3470 1.9198 54 1 1.6939 -0.2821 2.0704 55 1 1.6014 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650164538.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:25 Heat of formation + Delta-G solvation = 2.923010 kcal Electronic energy + Delta-G solvation = -29987.988130 eV Core-core repulsion = 26251.045998 eV Total energy + Delta-G solvation = -3736.942132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.243 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.05879 -39.46864 -38.31735 -36.57189 -35.63888 -34.50696 -32.66308 -32.01162 -31.48854 -30.20489 -28.28612 -27.21526 -24.85074 -24.58138 -24.42806 -23.66381 -23.20155 -22.13413 -20.65963 -19.47399 -18.54966 -18.25228 -17.40127 -16.80003 -16.63580 -16.31170 -16.12223 -15.85451 -15.75263 -15.42376 -15.35383 -14.97476 -14.89041 -14.52308 -14.30385 -14.22047 -13.96329 -13.79297 -13.48525 -13.38075 -13.20718 -13.08720 -13.01027 -12.91285 -12.75184 -12.67855 -12.46204 -12.41374 -12.31012 -12.25111 -12.04158 -12.00040 -11.83665 -11.51545 -11.42988 -11.34820 -11.20101 -10.96556 -10.85625 -10.55517 -9.33349 -9.27982 -9.05314 -8.19977 -6.28349 1.40601 1.41722 1.49011 1.94965 1.96905 2.40904 2.97630 3.04012 3.15086 3.24374 3.26128 3.83654 3.90189 3.96619 4.12019 4.15515 4.22405 4.26607 4.34430 4.38309 4.41402 4.45507 4.55977 4.61061 4.62803 4.64705 4.69683 4.69869 4.74504 4.76066 4.83422 4.89043 4.93385 4.94860 5.00192 5.02035 5.07561 5.10022 5.11135 5.24225 5.28872 5.38999 5.44595 5.46200 5.50119 5.62007 5.66731 5.78771 6.04977 6.05891 6.11488 6.22564 6.25779 6.31406 6.43559 6.75884 6.86853 7.40235 8.90760 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.002738 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.242238 B =10222.928309 C =11542.211113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.060 3.940 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.096 3.904 7 H 0.083 0.917 8 C -0.100 4.100 9 C -0.113 4.113 10 C 0.085 3.915 11 H 0.044 0.956 12 N -0.679 5.679 13 C 0.081 3.919 14 C 0.021 3.979 15 H 0.120 0.880 16 C 0.252 3.748 17 N -0.504 5.504 18 C 0.040 3.960 19 C -0.540 4.540 20 H 0.054 0.946 21 C 0.012 3.988 22 N -0.924 5.924 23 Si 0.947 3.053 24 H -0.263 1.263 25 H -0.282 1.282 26 H -0.280 1.280 27 C -0.097 4.097 28 C -0.134 4.134 29 C 0.058 3.942 30 C 0.059 3.941 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.027 0.973 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.334 0.666 43 H 0.099 0.901 44 H 0.030 0.970 45 H 0.034 0.966 46 H -0.001 1.001 47 H 0.264 0.736 48 H 0.074 0.926 49 H 0.055 0.945 50 H 0.065 0.935 51 H 0.051 0.949 52 H 0.035 0.965 53 H 0.079 0.921 54 H 0.036 0.964 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.214 23.886 3.428 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.068 4.068 4 C -0.073 4.073 5 N -0.260 5.260 6 C -0.012 4.012 7 H 0.101 0.899 8 C -0.138 4.138 9 C -0.151 4.151 10 C -0.025 4.025 11 H 0.062 0.938 12 N -0.310 5.310 13 C -0.049 4.049 14 C -0.001 4.001 15 H 0.137 0.863 16 C -0.064 4.064 17 N -0.182 5.182 18 C 0.001 3.999 19 C -0.578 4.578 20 H 0.072 0.928 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.773 3.227 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.206 1.206 27 C -0.136 4.136 28 C -0.173 4.173 29 C -0.071 4.071 30 C -0.069 4.069 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.152 0.848 43 H 0.117 0.883 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.017 0.983 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.070 0.930 52 H 0.054 0.946 53 H 0.097 0.903 54 H 0.054 0.946 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.485 23.351 4.412 27.323 hybrid contribution 0.687 -1.435 0.021 1.591 sum -12.798 21.916 4.433 25.764 Atomic orbital electron populations 1.22364 0.86269 1.02457 1.01059 1.62161 1.08803 1.14447 1.43095 1.22174 0.94615 0.88961 1.01071 1.22175 0.94254 0.98748 0.92092 1.62460 1.07727 1.13505 1.42346 1.21643 0.85767 0.99350 0.94477 0.89855 1.21423 0.94653 1.00708 0.96990 1.21662 0.95916 1.01146 0.96410 1.21581 0.96805 0.87748 0.96332 0.93763 1.60599 1.50378 1.01947 1.18117 1.21918 0.93446 0.89011 1.00574 1.19192 1.04002 0.94634 0.82250 0.86274 1.29637 0.90849 0.91235 0.94641 1.81039 1.11331 1.10917 1.14922 1.18965 0.93709 0.92774 0.94475 1.21531 1.10862 0.96894 1.28511 0.92818 1.25711 0.95337 1.02472 0.95216 1.70025 1.20222 1.34921 1.31175 0.85764 0.79119 0.80020 0.77786 1.18773 1.20695 1.20626 1.21406 0.95514 0.99955 0.96712 1.21958 0.96144 1.01417 0.97812 1.22123 0.93796 0.90100 1.01032 1.22151 0.94782 0.98446 0.91518 0.90516 0.91188 0.95454 0.94550 0.89338 0.89313 0.94551 0.91843 0.92131 0.89809 0.92212 0.84817 0.88323 0.95169 0.94787 0.98263 0.92703 0.90743 0.92630 0.91631 0.93017 0.94634 0.90268 0.94619 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.60 127.69 1.23 1.60 16 2 N -0.56 -10.13 4.97 -921.97 -4.58 -14.71 16 3 C 0.06 0.94 5.62 86.31 0.49 1.43 16 4 C 0.06 0.91 5.25 86.31 0.45 1.36 16 5 N -0.54 -9.76 4.70 -870.48 -4.09 -13.85 16 6 C 0.10 1.62 2.23 44.92 0.10 1.72 16 7 H 0.08 1.29 8.11 -2.39 -0.02 1.27 16 8 C -0.10 -1.74 4.85 30.59 0.15 -1.59 16 9 C -0.11 -1.84 5.30 30.60 0.16 -1.68 16 10 C 0.08 1.61 2.82 44.92 0.13 1.74 16 11 H 0.04 0.87 7.80 -2.39 -0.02 0.86 16 12 N -0.68 -15.92 4.82 -491.56 -2.37 -18.29 16 13 C 0.08 2.25 4.92 86.31 0.42 2.68 16 14 C 0.02 0.75 2.42 -12.60 -0.03 0.72 16 15 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 16 C 0.25 9.98 12.98 89.44 1.16 11.14 16 17 N -0.50 -21.62 18.54 20.01 0.37 -21.25 16 18 C 0.04 1.83 4.42 29.85 0.13 1.97 16 19 C -0.54 -28.77 8.60 25.60 0.22 -28.55 16 20 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 21 C 0.01 0.64 5.46 84.65 0.46 1.10 16 22 N -0.92 -53.35 13.29 21.45 0.28 -53.06 16 23 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 27 C -0.10 -1.73 5.53 30.58 0.17 -1.57 16 28 C -0.13 -2.53 4.34 30.58 0.13 -2.39 16 29 C 0.06 1.16 4.81 86.31 0.42 1.58 16 30 C 0.06 1.11 5.62 86.31 0.49 1.60 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.95 8.13 -2.39 -0.02 0.93 16 33 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 37 H 0.04 0.68 6.60 -2.39 -0.02 0.67 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.25 5.70 -2.39 -0.01 1.24 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 42 H 0.33 8.37 7.26 -89.69 -0.65 7.72 16 43 H 0.10 2.61 7.44 -2.39 -0.02 2.59 16 44 H 0.03 0.87 8.05 -2.38 -0.02 0.85 16 45 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.05 1.11 7.45 -2.39 -0.02 1.09 16 50 H 0.07 1.54 5.92 -2.39 -0.01 1.52 16 51 H 0.05 0.98 6.59 -2.39 -0.02 0.97 16 52 H 0.04 0.84 6.46 -2.39 -0.02 0.82 16 53 H 0.08 1.65 6.17 -2.38 -0.01 1.64 16 54 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 55 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 Total: -1.00 -61.08 413.47 -1.88 -62.96 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.20 Total: 19.67 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 6.27 Total: -7.15 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -10.38 Total: -121.17 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -61.08 -1.88 -62.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650164538.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.882 kcal (2) G-P(sol) polarization free energy of solvation -61.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds