Wall clock time and date at job start Tue Mar 31 2020 18:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46955 * 111.00093 * 2 1 4 4 C 1.53051 * 109.36663 * 183.18452 * 3 2 1 5 5 N 1.46955 * 109.36059 * 301.59787 * 4 3 2 6 6 C 1.46905 * 110.99750 * 183.18916 * 5 4 3 7 7 H 1.09000 * 109.47082 * 299.99829 * 6 5 4 8 8 C 1.52997 * 109.47305 * 59.99938 * 6 5 4 9 9 C 1.52999 * 109.47592 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46626 * 300.00035 * 9 8 6 11 11 H 1.09001 * 109.46998 * 179.97438 * 10 9 8 12 12 N 1.46898 * 109.47006 * 299.99747 * 10 9 8 13 13 C 1.46898 * 110.99523 * 205.00283 * 12 10 9 14 14 C 1.53008 * 109.46903 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.47036 * 304.99862 * 14 13 12 16 16 C 1.47201 * 109.46805 * 64.99981 * 14 13 12 17 17 N 7.87469 * 121.77392 * 80.64068 * 2 1 3 18 18 C 1.52997 * 109.47320 * 184.99839 * 14 13 12 19 19 C 1.50696 * 109.47453 * 175.00291 * 18 14 13 20 20 H 1.08002 * 119.99558 * 359.97438 * 19 18 14 21 21 C 1.37874 * 120.00295 * 180.02562 * 19 18 14 22 22 N 1.31515 * 120.00287 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99842 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46996 * 90.00285 * 23 21 19 25 25 H 1.48500 * 109.47080 * 210.00230 * 23 21 19 26 26 H 1.48501 * 109.46975 * 330.00224 * 23 21 19 27 27 C 1.52997 * 109.47164 * 59.99702 * 10 9 8 28 28 C 1.52996 * 109.46987 * 180.02562 * 6 5 4 29 29 C 1.46953 * 110.88501 * 59.32374 * 5 4 3 30 30 C 1.46955 * 110.99771 * 123.79590 * 2 1 3 31 31 H 1.09000 * 109.46525 * 60.00533 * 1 2 3 32 32 H 1.08997 * 109.46917 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47856 * 300.00390 * 1 2 3 34 34 H 1.09001 * 109.48796 * 63.21343 * 3 2 1 35 35 H 1.09001 * 109.48913 * 303.15231 * 3 2 1 36 36 H 1.08999 * 109.48676 * 181.63024 * 4 3 2 37 37 H 1.09000 * 109.50675 * 61.57206 * 4 3 2 38 38 H 1.09000 * 109.47140 * 59.99927 * 8 6 5 39 39 H 1.09002 * 109.47045 * 300.00019 * 8 6 5 40 40 H 1.08993 * 109.47839 * 180.02562 * 9 8 6 41 41 H 1.09000 * 109.47160 * 59.99666 * 9 8 6 42 42 H 1.00893 * 111.00101 * 81.05019 * 12 10 9 43 43 H 1.09001 * 109.47729 * 299.99785 * 13 12 10 44 44 H 1.09002 * 109.47461 * 60.00064 * 13 12 10 45 45 H 1.09000 * 109.47247 * 295.00562 * 18 14 13 46 46 H 1.09000 * 109.47144 * 55.00029 * 18 14 13 47 47 H 0.96993 * 120.00120 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.47140 * 60.00051 * 27 10 9 49 49 H 1.09001 * 109.47230 * 179.97438 * 27 10 9 50 50 H 1.08992 * 109.47534 * 60.00146 * 28 6 5 51 51 H 1.08996 * 109.47134 * 299.99341 * 28 6 5 52 52 H 1.08997 * 109.49222 * 60.64074 * 29 5 4 53 53 H 1.09002 * 109.48921 * 180.71136 * 29 5 4 54 54 H 1.09007 * 109.49036 * 296.78227 * 30 2 1 55 55 H 1.08996 * 109.49044 * 56.82180 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3291 -0.0802 5 7 4.0500 0.5659 1.0600 6 6 5.5190 0.5660 1.0601 7 1 5.8824 0.1122 0.1381 8 6 6.0290 2.0053 1.1556 9 6 7.5590 2.0054 1.1551 10 6 8.0694 1.2028 2.3537 11 1 9.1594 1.2025 2.3531 12 7 7.5800 1.8142 3.5965 13 6 8.4641 1.4928 4.7248 14 6 7.9235 2.1460 5.9985 15 1 7.8006 3.2164 5.8338 16 6 6.6221 1.5496 6.3412 17 7 5.6156 1.0887 6.6054 18 6 8.9080 1.9163 7.1469 19 6 8.4373 2.6620 8.3689 20 1 7.5271 3.2421 8.3301 21 6 9.1690 2.6046 9.5360 22 7 8.7585 3.2558 10.6023 23 14 10.7437 1.6018 9.6027 24 1 11.8931 2.4591 9.2166 25 1 10.9478 1.0920 10.9824 26 1 10.6418 0.4572 8.6621 27 6 7.5594 -0.2365 2.2581 28 6 6.0289 -0.2370 2.2585 29 6 3.5234 -0.8060 1.0600 30 6 1.9956 -0.7631 1.1401 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8898 34 1 1.6937 1.8774 0.9173 35 1 1.6014 1.9128 -0.8603 36 1 3.9178 2.3449 -0.0512 37 1 3.8258 0.8481 -1.0104 38 1 5.6656 2.4590 2.0777 39 1 5.6658 2.5769 0.3016 40 1 7.9224 3.0307 1.2237 41 1 7.9221 1.5518 0.2329 42 1 6.6308 1.5318 3.7891 43 1 8.5037 0.4118 4.8591 44 1 9.4660 1.8704 4.5204 45 1 8.9635 0.8509 7.3703 46 1 9.8945 2.2787 6.8577 47 1 9.2731 3.2150 11.4235 48 1 7.9225 -0.6901 1.3359 49 1 7.9233 -0.8084 3.1117 50 1 5.6657 -1.2623 2.1900 51 1 5.6656 0.2164 3.1807 52 1 3.8254 -1.3115 0.1427 53 1 3.9177 -1.3468 1.9203 54 1 1.6936 -0.2819 2.0705 55 1 1.6010 -1.7787 1.1114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650164539.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:29 Heat of formation + Delta-G solvation = 5.408676 kcal Electronic energy + Delta-G solvation = -29830.322602 eV Core-core repulsion = 26093.488257 eV Total energy + Delta-G solvation = -3736.834345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.243 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.09278 -39.64682 -38.33666 -36.58389 -35.63525 -34.51905 -32.85800 -32.47615 -31.27757 -30.43329 -28.53468 -27.46432 -25.08761 -24.73320 -24.17890 -23.33420 -22.81865 -22.29145 -20.77895 -19.84992 -18.95038 -18.30054 -17.67592 -17.15340 -16.48244 -16.14014 -15.94566 -15.88236 -15.74494 -15.68987 -15.28058 -15.12919 -15.02219 -14.64244 -14.44764 -14.13989 -14.10415 -13.81607 -13.73426 -13.67097 -13.34488 -13.15311 -13.12798 -12.97212 -12.83974 -12.60086 -12.52990 -12.44972 -12.26193 -12.13233 -11.98192 -11.92572 -11.72479 -11.66989 -11.59358 -11.39413 -11.28350 -11.02796 -10.88695 -10.72639 -9.46541 -9.24853 -9.22858 -8.24336 -6.29990 1.42726 1.45573 1.55910 1.93516 1.95476 2.41368 2.81510 2.93395 3.11525 3.24577 3.26993 3.71037 3.81713 3.87096 4.02215 4.04456 4.12387 4.19490 4.25941 4.33348 4.37258 4.40926 4.42455 4.44618 4.54773 4.56951 4.59203 4.60264 4.63915 4.66299 4.74777 4.78211 4.84572 4.87320 4.89918 4.95400 4.99060 4.99497 5.06126 5.12440 5.17245 5.24021 5.26120 5.34879 5.44941 5.49789 5.54605 5.64607 5.93132 5.95379 6.14701 6.18159 6.21738 6.28746 6.43519 6.75064 6.80959 7.34336 8.92763 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.002399 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.823254 B =11667.361729 C =12501.527106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.057 3.943 4 C 0.059 3.941 5 N -0.551 5.551 6 C 0.096 3.904 7 H 0.046 0.954 8 C -0.108 4.108 9 C -0.097 4.097 10 C 0.085 3.915 11 H 0.095 0.905 12 N -0.690 5.690 13 C 0.075 3.925 14 C 0.023 3.977 15 H 0.117 0.883 16 C 0.246 3.754 17 N -0.506 5.506 18 C -0.001 4.001 19 C -0.531 4.531 20 H 0.026 0.974 21 C 0.001 3.999 22 N -0.955 5.955 23 Si 0.951 3.049 24 H -0.256 1.256 25 H -0.296 1.296 26 H -0.237 1.237 27 C -0.144 4.144 28 C -0.112 4.112 29 C 0.058 3.942 30 C 0.057 3.943 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.027 0.973 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.334 0.666 43 H 0.037 0.963 44 H 0.116 0.884 45 H 0.025 0.975 46 H 0.064 0.936 47 H 0.264 0.736 48 H 0.084 0.916 49 H 0.057 0.943 50 H 0.063 0.937 51 H 0.043 0.957 52 H 0.041 0.959 53 H 0.079 0.921 54 H 0.025 0.975 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -7.852 -29.566 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.072 4.072 4 C -0.069 4.069 5 N -0.277 5.277 6 C -0.012 4.012 7 H 0.064 0.936 8 C -0.146 4.146 9 C -0.136 4.136 10 C -0.024 4.024 11 H 0.113 0.887 12 N -0.322 5.322 13 C -0.056 4.056 14 C 0.001 3.999 15 H 0.135 0.865 16 C -0.070 4.070 17 N -0.184 5.184 18 C -0.040 4.040 19 C -0.569 4.569 20 H 0.045 0.955 21 C -0.196 4.196 22 N -0.596 5.596 23 Si 0.774 3.226 24 H -0.180 1.180 25 H -0.223 1.223 26 H -0.160 1.160 27 C -0.183 4.183 28 C -0.150 4.150 29 C -0.070 4.070 30 C -0.071 4.071 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.154 0.846 43 H 0.056 0.944 44 H 0.134 0.866 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.103 0.897 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.062 0.938 52 H 0.059 0.941 53 H 0.097 0.903 54 H 0.043 0.957 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.228 -7.894 -29.137 30.823 hybrid contribution 0.054 -0.829 1.345 1.581 sum -6.174 -8.723 -27.792 29.776 Atomic orbital electron populations 1.22395 0.86205 1.02722 1.01003 1.62242 1.08839 1.14120 1.42521 1.22203 0.94773 0.89228 1.00959 1.22187 0.94136 0.99162 0.91429 1.62160 1.08129 1.13930 1.43448 1.21569 0.85822 0.96851 0.96913 0.93628 1.21533 0.96265 0.94746 1.02012 1.21475 0.94265 1.00960 0.96870 1.21672 1.00081 0.91073 0.89599 0.88679 1.60748 1.05755 1.62890 1.02801 1.22047 0.98310 0.97918 0.87290 1.19142 0.83726 1.00855 0.96208 0.86544 1.29867 0.94549 0.91804 0.90758 1.81131 1.14030 1.12131 1.11086 1.19571 0.95941 0.97068 0.91439 1.21408 1.08969 1.30033 0.96477 0.95516 1.26076 1.02069 0.96489 0.94940 1.70094 1.41606 1.44875 1.03003 0.85654 0.79110 0.80240 0.77644 1.18010 1.22253 1.16040 1.22164 0.94702 0.98533 1.02946 1.21586 0.96108 0.99670 0.97640 1.22154 0.94247 0.89750 1.00872 1.22165 0.94685 0.98846 0.91399 0.90203 0.90593 0.96084 0.95429 0.88844 0.89242 0.94147 0.92697 0.91315 0.90880 0.90309 0.84623 0.94436 0.86626 0.95615 0.91756 0.92677 0.89705 0.92404 0.91820 0.93832 0.94111 0.90311 0.95667 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.60 127.69 1.23 1.56 16 2 N -0.55 -9.58 4.97 -921.94 -4.58 -14.16 16 3 C 0.06 0.96 5.62 86.31 0.49 1.44 16 4 C 0.06 1.00 5.32 86.31 0.46 1.46 16 5 N -0.55 -10.89 4.58 -870.48 -3.99 -14.87 16 6 C 0.10 1.71 1.94 44.91 0.09 1.80 16 7 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 8 C -0.11 -1.89 4.73 30.59 0.14 -1.74 16 9 C -0.10 -1.46 5.64 30.60 0.17 -1.29 16 10 C 0.09 1.45 2.85 44.92 0.13 1.58 16 11 H 0.10 1.40 7.80 -2.39 -0.02 1.38 16 12 N -0.69 -15.79 5.76 -491.55 -2.83 -18.62 16 13 C 0.07 1.83 4.92 86.31 0.42 2.26 16 14 C 0.02 0.77 2.42 -12.60 -0.03 0.74 16 15 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 16 C 0.25 10.02 12.98 89.42 1.16 11.18 16 17 N -0.51 -22.80 18.55 20.03 0.37 -22.43 16 18 C 0.00 -0.05 3.49 29.85 0.10 0.06 16 19 C -0.53 -29.05 9.15 25.60 0.23 -28.82 16 20 H 0.03 1.66 7.84 -2.91 -0.02 1.64 16 21 C 0.00 0.04 5.47 84.65 0.46 0.50 16 22 N -0.96 -59.73 13.96 21.45 0.30 -59.43 16 23 Si 0.95 41.73 27.47 68.60 1.88 43.61 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.24 -9.30 6.54 99.48 0.65 -8.65 16 27 C -0.14 -2.40 5.52 30.61 0.17 -2.24 16 28 C -0.11 -2.20 4.60 30.61 0.14 -2.06 16 29 C 0.06 1.09 5.23 86.31 0.45 1.54 16 30 C 0.06 1.06 5.62 86.31 0.49 1.54 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.90 8.13 -2.39 -0.02 0.89 16 33 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.40 6.14 -2.39 -0.01 1.39 16 37 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.05 1.26 7.21 -2.39 -0.02 1.24 16 39 H 0.07 1.07 6.34 -2.39 -0.02 1.05 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.33 8.91 4.64 -89.70 -0.42 8.49 16 43 H 0.04 0.91 7.43 -2.39 -0.02 0.89 16 44 H 0.12 2.31 8.06 -2.39 -0.02 2.29 16 45 H 0.03 1.05 7.20 -2.39 -0.02 1.03 16 46 H 0.06 2.30 7.57 -2.39 -0.02 2.28 16 47 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.06 1.07 7.45 -2.39 -0.02 1.05 16 50 H 0.06 1.22 6.28 -2.39 -0.02 1.20 16 51 H 0.04 1.12 6.26 -2.39 -0.01 1.10 16 52 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.08 1.52 6.06 -2.39 -0.01 1.51 16 54 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 55 H 0.09 1.39 8.13 -2.39 -0.02 1.37 16 Total: -1.00 -68.97 409.70 -2.15 -71.13 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.38 Total: 25.26 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 6.31 Total: -10.49 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -10.73 Total: -129.51 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.88 Total: 43.61 kcal Total: -68.97 -2.15 -71.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650164539.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.536 kcal (2) G-P(sol) polarization free energy of solvation -68.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds