Wall clock time and date at job start Tue Mar 31 2020 19:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00288 * 2 1 4 4 H 1.48500 * 109.47262 * 270.00272 * 3 2 1 5 5 H 1.48505 * 109.47172 * 30.00332 * 3 2 1 6 6 H 1.48504 * 109.47378 * 150.00620 * 3 2 1 7 7 C 1.37878 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00048 * 359.97438 * 7 2 1 10 10 S 1.81405 * 109.46754 * 180.02562 * 9 7 2 11 11 C 1.76199 * 102.99690 * 180.02562 * 10 9 7 12 12 C 1.38999 * 120.08205 * 359.72224 * 11 10 9 13 13 C 1.38055 * 119.91999 * 179.69746 * 12 11 10 14 14 C 1.38327 * 120.07944 * 0.57811 * 13 12 11 15 15 N 1.48006 * 119.91838 * 179.69839 * 14 13 12 16 16 O 1.21799 * 119.99927 * 180.02562 * 15 14 13 17 17 O 1.21799 * 120.00288 * 0.02562 * 15 14 13 18 18 C 1.38279 * 120.16201 * 359.72525 * 14 13 12 19 19 C 1.38101 * 120.07916 * 359.97365 * 18 14 13 20 20 C 1.50694 * 120.04222 * 180.02562 * 19 18 14 21 21 S 1.81401 * 109.46947 * 270.01905 * 20 19 18 22 22 O 1.42096 * 110.54413 * 283.24868 * 21 20 19 23 23 O 1.42100 * 110.54038 * 59.99992 * 21 20 19 24 24 F 1.61006 * 104.44845 * 171.62200 * 21 20 19 25 25 H 0.97002 * 119.99829 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47022 * 60.00524 * 9 7 2 27 27 H 1.08998 * 109.46894 * 300.00079 * 9 7 2 28 28 H 1.08005 * 120.03980 * 359.97438 * 12 11 10 29 29 H 1.08002 * 119.96019 * 180.30560 * 13 12 11 30 30 H 1.07991 * 119.95962 * 180.02562 * 18 14 13 31 31 H 1.08999 * 109.47006 * 30.01771 * 20 19 18 32 32 H 1.08999 * 109.47892 * 150.02207 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0005 11 6 1.3823 -5.2949 -0.0013 12 6 0.0009 -5.1402 0.0041 13 6 -0.8166 -6.2526 -0.0028 14 6 -0.2626 -7.5201 -0.0031 15 7 -1.1425 -8.7102 -0.0038 16 8 -0.6563 -9.8270 -0.0035 17 8 -2.3527 -8.5730 -0.0046 18 6 1.1111 -7.6779 -0.0021 19 6 1.9352 -6.5697 -0.0014 20 6 3.4321 -6.7427 -0.0010 21 16 4.0321 -6.8133 1.7095 22 8 4.0600 -5.5131 2.2822 23 8 3.4415 -7.9056 2.4004 24 9 5.5838 -7.2212 1.5745 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 -0.4323 -4.1508 0.0092 29 1 -1.8900 -6.1331 -0.0036 30 1 1.5401 -8.6690 -0.0027 31 1 3.6911 -7.6682 -0.5153 32 1 3.8956 -5.9000 -0.5140 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651134107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:53 Heat of formation + Delta-G solvation = -130.735119 kcal Electronic energy + Delta-G solvation = -23782.417261 eV Core-core repulsion = 19685.238910 eV Total energy + Delta-G solvation = -4097.178352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 335.018 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.15081 -43.27420 -40.73657 -38.68243 -37.68678 -37.53604 -35.44851 -34.81878 -33.24710 -30.77037 -29.18914 -27.87275 -25.47530 -23.98454 -23.31338 -21.49577 -20.20650 -19.78477 -19.27303 -19.09416 -18.62734 -18.36194 -18.14931 -17.97676 -17.12551 -16.67036 -15.93817 -15.73282 -15.59709 -15.31778 -15.02866 -14.87010 -14.40624 -14.32327 -14.14860 -14.05171 -13.95746 -13.60099 -13.50499 -13.03651 -12.79691 -12.72645 -12.66054 -12.61105 -12.43563 -12.28865 -12.10411 -11.70035 -11.45663 -11.16714 -10.75886 -10.47317 -8.70253 -8.39721 -6.53305 -1.61695 -1.33727 -0.25230 0.11372 0.21687 0.43023 1.40387 1.41136 1.42599 1.52981 1.56371 1.90902 2.15085 2.33306 2.71932 2.82489 2.97682 3.22568 3.46827 3.59962 3.70254 3.87102 4.24502 4.30930 4.51006 4.52928 4.65521 4.78368 4.80571 4.95808 5.30237 5.49990 5.75529 6.50637 6.53446 7.16682 8.71652 Molecular weight = 335.02amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.004335 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.749236 B = 6458.082409 C = 8768.434327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.055 3.945 10 S -0.070 6.070 11 C -0.033 4.033 12 C -0.143 4.143 13 C -0.009 4.009 14 C -0.079 4.079 15 N 0.038 4.962 16 O -0.165 6.165 17 O -0.187 6.187 18 C -0.002 4.002 19 C -0.100 4.100 20 C -0.563 4.563 21 S 2.573 3.427 22 O -0.941 6.941 23 O -0.948 6.948 24 F -0.471 7.471 25 H 0.272 0.728 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.150 0.850 29 H 0.172 0.828 30 H 0.192 0.808 31 H 0.216 0.784 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.213 -14.231 -2.425 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.088 0.912 9 C -0.092 4.092 10 S 0.185 5.815 11 C -0.150 4.150 12 C -0.168 4.168 13 C -0.032 4.032 14 C -0.167 4.167 15 N 0.553 4.447 16 O -0.381 6.381 17 O -0.397 6.397 18 C -0.025 4.025 19 C -0.110 4.110 20 C -0.692 4.692 21 S 2.668 3.332 22 O -0.940 6.940 23 O -0.946 6.946 24 F -0.471 7.471 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.168 0.832 29 H 0.190 0.810 30 H 0.209 0.791 31 H 0.234 0.766 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.058 -13.286 -1.685 15.630 hybrid contribution -1.819 0.772 -0.525 2.045 sum 6.239 -12.514 -2.210 14.157 Atomic orbital electron populations 1.70006 1.07492 1.28806 1.49206 1.25760 0.95783 1.02693 0.93554 0.85359 0.78615 0.77873 0.78788 1.19349 1.20488 1.18949 1.20895 0.93759 0.89667 1.53989 0.91227 1.21392 0.95105 0.92447 1.00278 1.85406 1.15007 0.96098 1.84992 1.22819 0.98198 0.98526 0.95496 1.21384 0.91502 1.00222 1.03738 1.21134 1.03029 0.88615 0.90411 1.20978 0.90837 0.85133 1.19750 1.43621 1.01519 1.02573 0.96942 1.94504 1.78835 1.11310 1.53460 1.94539 0.97061 1.93216 1.54901 1.21115 0.89763 1.01478 0.90100 1.18233 0.92991 0.90165 1.09659 1.29492 0.99239 1.17967 1.22470 1.07693 0.71136 0.74782 0.79600 1.93812 1.84515 1.40289 1.75346 1.93730 1.75590 1.54762 1.70551 1.93637 1.62522 1.94521 1.96375 0.91901 0.94051 0.94584 0.83212 0.81034 0.79089 0.76648 0.80709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.98 13.29 21.45 0.28 -48.70 16 2 C 0.02 1.25 5.46 84.66 0.46 1.71 16 3 Si 0.97 40.03 29.54 68.60 2.03 42.06 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.54 -27.34 9.13 25.60 0.23 -27.10 16 8 H 0.07 3.44 7.71 -2.91 -0.02 3.42 16 9 C 0.05 2.45 4.09 71.24 0.29 2.74 16 10 S -0.07 -2.41 19.67 -56.49 -1.11 -3.53 16 11 C -0.03 -0.93 6.11 22.63 0.14 -0.79 16 12 C -0.14 -4.02 9.36 22.41 0.21 -3.81 16 13 C -0.01 -0.23 9.55 22.25 0.21 -0.02 16 14 C -0.08 -1.94 6.85 36.41 0.25 -1.69 16 15 N 0.04 1.05 4.45 -46.40 -0.21 0.84 16 16 O -0.16 -4.50 18.44 18.89 0.35 -4.15 16 17 O -0.19 -5.46 18.44 18.89 0.35 -5.11 16 18 C 0.00 -0.05 9.20 22.25 0.20 0.16 16 19 C -0.10 -2.14 5.16 -19.73 -0.10 -2.24 16 20 C -0.56 -7.88 5.95 71.23 0.42 -7.46 16 21 S 2.57 52.46 6.42 -56.49 -0.36 52.10 16 22 O -0.94 -27.64 17.78 -127.65 -2.27 -29.91 16 23 O -0.95 -23.54 18.16 -127.65 -2.32 -25.86 16 24 F -0.47 -8.35 17.85 44.97 0.80 -7.55 16 25 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 26 H 0.04 1.90 7.76 -2.39 -0.02 1.88 16 27 H 0.04 1.70 7.74 -2.39 -0.02 1.69 16 28 H 0.15 4.59 5.88 -2.91 -0.02 4.57 16 29 H 0.17 3.65 7.60 -2.91 -0.02 3.63 16 30 H 0.19 2.71 7.60 -2.92 -0.02 2.68 16 31 H 0.22 0.58 8.09 -2.39 -0.02 0.56 16 32 H 0.18 2.26 6.78 -2.39 -0.02 2.24 16 Total: -1.00 -66.38 323.70 1.06 -65.32 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 1.19 Total: 2.99 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 2.32 Total: -38.51 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.08 Total: -47.86 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: -3.89 Total: -65.03 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.80 Total: -7.55 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: 50.05 SS G_CDS: -1.47 Total: 48.58 kcal Total: -66.38 1.06 -65.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651134107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.411 kcal (2) G-P(sol) polarization free energy of solvation -66.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds