Wall clock time and date at job start Tue Mar 31 2020 18:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.28869 * 2 1 4 4 C 1.53997 * 110.32692 * 122.14065 * 2 1 3 5 5 N 1.47484 * 107.08969 * 117.68814 * 4 2 1 6 6 C 1.34773 * 127.03645 * 205.41189 * 5 4 2 7 7 O 1.21281 * 119.99729 * 174.83629 * 6 5 4 8 8 C 1.50702 * 120.00077 * 354.84064 * 6 5 4 9 9 C 1.53002 * 109.47127 * 124.87270 * 8 6 5 10 10 C 1.53777 * 113.61297 * 282.97674 * 9 8 6 11 11 C 1.53783 * 87.07979 * 220.01967 * 10 9 8 12 12 C 1.53778 * 113.61389 * 185.47719 * 9 8 6 13 13 C 1.52996 * 109.46802 * 244.87372 * 8 6 5 14 14 C 1.53785 * 113.61132 * 157.49906 * 13 8 6 15 15 C 1.53783 * 87.08056 * 220.01847 * 14 13 8 16 16 C 1.53779 * 87.08248 * 25.42930 * 15 14 13 17 17 C 1.48118 * 105.92747 * 25.44395 * 5 4 2 18 18 C 1.54619 * 110.41369 * 237.81208 * 2 1 3 19 19 H 1.08999 * 110.73558 * 337.54989 * 18 2 1 20 20 C 1.52994 * 110.74030 * 100.87568 * 18 2 1 21 21 N 1.46507 * 109.47088 * 184.99993 * 20 18 2 22 22 C 1.36938 * 119.99827 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00074 * 359.97438 * 22 21 20 24 24 C 1.38808 * 119.99847 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99992 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00101 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47146 * 60.00391 * 26 24 22 28 28 H 1.48508 * 109.47419 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47331 * 300.00480 * 26 24 22 30 30 H 1.09000 * 109.47091 * 300.69865 * 1 2 3 31 31 H 1.08999 * 109.47359 * 60.69733 * 1 2 3 32 32 H 1.08994 * 109.47099 * 180.69865 * 1 2 3 33 33 H 1.09002 * 109.91099 * 237.05115 * 4 2 1 34 34 H 1.09007 * 109.91172 * 358.13094 * 4 2 1 35 35 H 1.09003 * 109.46753 * 4.87199 * 8 6 5 36 36 H 1.09003 * 112.84795 * 54.28127 * 9 8 6 37 37 H 1.09003 * 113.61664 * 334.56270 * 10 9 8 38 38 H 1.08999 * 113.61452 * 105.47317 * 10 9 8 39 39 H 1.09003 * 113.61151 * 270.88591 * 11 10 9 40 40 H 1.08991 * 113.61910 * 139.98071 * 11 10 9 41 41 H 1.08996 * 113.61104 * 254.53349 * 12 9 8 42 42 H 1.08999 * 113.61312 * 25.43253 * 12 9 8 43 43 H 1.08998 * 112.85392 * 288.80026 * 13 8 6 44 44 H 1.08997 * 113.61407 * 334.55947 * 14 13 8 45 45 H 1.08995 * 113.61209 * 105.47016 * 14 13 8 46 46 H 1.09002 * 113.61519 * 270.88459 * 15 14 13 47 47 H 1.08998 * 113.61933 * 139.98014 * 15 14 13 48 48 H 1.08998 * 113.62153 * 220.01707 * 16 15 14 49 49 H 1.09006 * 113.61192 * 89.11426 * 16 15 14 50 50 H 1.09006 * 110.66379 * 79.15036 * 17 5 4 51 51 H 1.08997 * 110.66356 * 202.26589 * 17 5 4 52 52 H 1.09000 * 109.47393 * 305.00106 * 20 18 2 53 53 H 1.09003 * 109.47161 * 64.99943 * 20 18 2 54 54 H 0.96995 * 119.99944 * 0.02562 * 21 20 18 55 55 H 0.97001 * 120.00205 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8298 -1.9204 0.7101 6 6 3.0656 -3.0855 1.3452 7 8 3.6340 -3.9872 0.7665 8 6 2.6230 -3.2679 2.7741 9 6 1.7375 -4.5112 2.8790 10 6 0.3048 -4.2921 2.3651 11 6 -0.1683 -5.1423 3.5560 12 6 1.1223 -4.7134 4.2738 13 6 3.8511 -3.4393 3.6704 14 6 3.5908 -3.0902 5.1453 15 6 4.9806 -2.4319 5.1530 16 6 4.8107 -2.2381 3.6370 17 6 3.2863 -1.5347 -0.6451 18 6 2.0693 -0.7719 -1.2264 19 1 1.3210 -1.4691 -1.6032 20 6 2.5113 0.1969 -2.3249 21 7 2.9043 -0.5612 -3.5154 22 6 3.3393 0.0980 -4.6341 23 1 3.3924 1.1767 -4.6389 24 6 3.7122 -0.6202 -5.7619 25 7 3.6470 -1.9348 -5.7562 26 14 4.3050 0.2790 -7.2881 27 1 5.5128 1.0762 -6.9551 28 1 4.6392 -0.7083 -8.3459 29 1 3.2338 1.1839 -7.7769 30 1 -0.3633 0.5246 0.8836 31 1 -0.3634 0.5029 -0.8961 32 1 -0.3633 -1.0275 0.0125 33 1 2.7166 -0.1222 1.8111 34 1 1.2334 -1.1145 1.8366 35 1 2.0589 -2.3919 3.0943 36 1 2.2145 -5.4056 2.4783 37 1 -0.0223 -3.2534 2.4130 38 1 0.1131 -4.7530 1.3962 39 1 -0.2136 -6.2097 3.3398 40 1 -1.0759 -4.7662 4.0279 41 1 1.5908 -5.5144 4.8456 42 1 1.0189 -3.7899 4.8434 43 1 4.3479 -4.3991 3.5287 44 1 2.7727 -2.3844 5.2891 45 1 3.5174 -3.9629 5.7941 46 1 5.7865 -3.1164 5.4181 47 1 5.0177 -1.4966 5.7114 48 1 5.7220 -2.4229 3.0682 49 1 4.3259 -1.2994 3.3685 50 1 4.1571 -0.8816 -0.5863 51 1 3.5072 -2.4190 -1.2428 52 1 1.6862 0.8638 -2.5748 53 1 3.3590 0.7842 -1.9719 54 1 2.8563 -1.5299 -3.5113 55 1 3.9072 -2.4367 -6.5445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672305299.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:32 Heat of formation + Delta-G solvation = -17.812385 kcal Electronic energy + Delta-G solvation = -30545.064899 eV Core-core repulsion = 26774.930862 eV Total energy + Delta-G solvation = -3770.134037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.81008 -40.21852 -38.73874 -38.72835 -36.45840 -34.18899 -33.04773 -32.12759 -30.51668 -27.47169 -27.21626 -26.76941 -26.30966 -25.46952 -25.12363 -23.46509 -22.43707 -21.18396 -20.87750 -19.99896 -19.80753 -19.07923 -18.11600 -17.32460 -16.80720 -16.64433 -16.36306 -16.34600 -15.75552 -15.46837 -15.27100 -15.05762 -14.95213 -14.76913 -14.33598 -13.95949 -13.67803 -13.46149 -13.41647 -13.33008 -13.29557 -13.11466 -13.03996 -12.86635 -12.72538 -12.65570 -12.46575 -12.32721 -12.21371 -12.08976 -11.96099 -11.73932 -11.55203 -11.47089 -11.39965 -11.35757 -11.27214 -11.16333 -10.94537 -10.66045 -10.54242 -9.69386 -9.02165 -7.95925 -5.25925 1.44995 1.48980 1.55119 1.61813 1.95293 2.54731 3.28685 3.37458 3.48177 3.56391 3.66653 3.68321 3.80830 3.83099 3.85595 3.97050 4.01223 4.08982 4.12626 4.21656 4.25123 4.32243 4.39607 4.49572 4.53067 4.54755 4.56507 4.66502 4.79539 4.83066 4.85028 4.86426 4.87339 4.89123 4.91575 4.94093 5.01362 5.05475 5.08327 5.11253 5.11858 5.16212 5.20052 5.21410 5.25739 5.33928 5.35490 5.42716 5.47387 5.55139 5.62200 5.63288 6.25018 6.60609 7.17700 7.30732 8.07149 8.29039 9.27646 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.002729 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.747448 B =10256.720116 C =10566.910949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.103 0.897 4 C 0.103 3.897 5 N -0.619 5.619 6 C 0.532 3.468 7 O -0.600 6.600 8 C -0.067 4.067 9 C -0.105 4.105 10 C -0.145 4.145 11 C -0.136 4.136 12 C -0.112 4.112 13 C -0.099 4.099 14 C -0.112 4.112 15 C -0.135 4.135 16 C -0.149 4.149 17 C 0.116 3.884 18 C -0.091 4.091 19 H 0.062 0.938 20 C 0.165 3.835 21 N -0.749 5.749 22 C -0.245 4.245 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.973 5.973 26 Si 0.977 3.023 27 H -0.276 1.276 28 H -0.298 1.298 29 H -0.274 1.274 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.039 0.961 49 H 0.088 0.912 50 H 0.070 0.930 51 H 0.038 0.962 52 H 0.031 0.969 53 H 0.028 0.972 54 H 0.370 0.630 55 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 1.991 30.361 31.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.121 0.879 4 C -0.018 4.018 5 N -0.351 5.351 6 C 0.323 3.677 7 O -0.481 6.481 8 C -0.088 4.088 9 C -0.124 4.124 10 C -0.183 4.183 11 C -0.174 4.174 12 C -0.150 4.150 13 C -0.118 4.118 14 C -0.149 4.149 15 C -0.172 4.172 16 C -0.186 4.186 17 C -0.007 4.007 18 C -0.111 4.111 19 H 0.080 0.920 20 C 0.039 3.961 21 N -0.391 5.391 22 C -0.377 4.377 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.805 3.195 27 H -0.202 1.202 28 H -0.224 1.224 29 H -0.200 1.200 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.058 0.942 49 H 0.106 0.894 50 H 0.088 0.912 51 H 0.057 0.943 52 H 0.049 0.951 53 H 0.045 0.955 54 H 0.201 0.799 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.669 1.600 30.033 31.038 hybrid contribution 0.895 -0.605 -2.170 2.424 sum -6.774 0.996 27.863 28.692 Atomic orbital electron populations 1.21818 0.92694 1.01912 1.03060 1.22094 0.97476 0.99852 0.91545 0.87853 1.22487 0.96252 0.86450 0.96618 1.49002 1.53357 1.15773 1.16987 1.21141 0.77600 0.79542 0.89394 1.90677 1.45666 1.42213 1.69528 1.21385 0.97999 1.00861 0.88585 1.22461 0.93987 0.96043 0.99863 1.23058 0.95639 1.01508 0.98081 1.22776 0.98658 0.99568 0.96380 1.22905 0.95126 1.02769 0.94159 1.22425 0.94278 0.98671 0.96448 1.22942 0.97598 1.01267 0.93096 1.22779 0.98055 1.01694 0.94712 1.23039 0.98850 0.98548 0.98202 1.22279 0.97251 0.97949 0.83240 1.22364 0.96105 0.97146 0.95468 0.91962 1.20800 0.96698 0.93159 0.85490 1.42644 1.79229 1.05647 1.11575 1.19640 1.34543 0.91846 0.91646 0.90173 1.25648 1.03552 0.96245 1.01733 1.69847 1.56175 1.06286 1.30099 0.85166 0.78455 0.77053 0.78815 1.20244 1.22434 1.20008 0.89383 0.92907 0.93304 0.89117 0.88114 0.86727 0.91645 0.88618 0.94104 0.90865 0.89640 0.90865 0.87613 0.90955 0.87887 0.90178 0.90496 0.89878 0.94198 0.89380 0.91222 0.94326 0.95080 0.95453 0.79902 0.94124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.89 71.98 0.64 -1.73 16 2 C -0.09 -1.86 3.17 -9.90 -0.03 -1.89 16 3 H 0.10 1.86 7.85 -2.39 -0.02 1.84 16 4 C 0.10 1.85 6.07 86.53 0.53 2.38 16 5 N -0.62 -17.42 3.29 -809.40 -2.66 -20.08 16 6 C 0.53 16.34 6.06 87.66 0.53 16.87 16 7 O -0.60 -25.44 16.94 -3.03 -0.05 -25.49 16 8 C -0.07 -1.33 1.55 -11.54 -0.02 -1.35 16 9 C -0.10 -2.04 2.97 -10.27 -0.03 -2.07 16 10 C -0.15 -2.62 7.55 31.12 0.23 -2.39 16 11 C -0.14 -1.82 8.08 31.12 0.25 -1.56 16 12 C -0.11 -1.34 6.40 31.12 0.20 -1.14 16 13 C -0.10 -1.82 2.99 -10.27 -0.03 -1.85 16 14 C -0.11 -1.19 6.02 31.12 0.19 -1.00 16 15 C -0.14 -1.70 8.08 31.12 0.25 -1.45 16 16 C -0.15 -2.72 7.10 31.12 0.22 -2.50 16 17 C 0.12 4.12 6.47 86.73 0.56 4.68 16 18 C -0.09 -2.94 2.63 -9.58 -0.03 -2.96 16 19 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 20 C 0.16 6.48 5.58 86.38 0.48 6.96 16 21 N -0.75 -39.40 5.52 -343.45 -1.90 -41.29 16 22 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 23 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 24 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 25 N -0.97 -62.49 13.06 21.65 0.28 -62.21 16 26 Si 0.98 47.38 29.55 68.60 2.03 49.41 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 28 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 29 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.26 6.63 -2.38 -0.02 1.25 16 35 H 0.11 1.56 5.97 -2.39 -0.01 1.55 16 36 H 0.07 1.71 8.02 -2.39 -0.02 1.69 16 37 H 0.10 1.39 8.04 -2.39 -0.02 1.37 16 38 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.11 0.80 7.32 -2.39 -0.02 0.79 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.10 0.70 7.71 -2.39 -0.02 0.68 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.09 1.44 8.10 -2.38 -0.02 1.43 16 50 H 0.07 2.47 7.94 -2.38 -0.02 2.45 16 51 H 0.04 1.73 7.81 -2.39 -0.02 1.71 16 52 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.03 1.06 7.99 -2.39 -0.02 1.04 16 54 H 0.37 21.34 7.67 -92.71 -0.71 20.63 16 55 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -77.56 423.85 3.08 -74.47 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.13 Total: 33.65 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.26 Total: -8.45 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -4.28 Total: -123.58 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -77.56 3.08 -74.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672305299.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.661 kcal (2) G-P(sol) polarization free energy of solvation -77.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds