Wall clock time and date at job start Tue Mar 31 2020 18:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47068 * 2 1 4 4 H 1.09007 * 109.46454 * 182.42560 * 3 2 1 5 5 C 1.50700 * 109.47292 * 62.42747 * 3 2 1 6 6 O 1.21274 * 119.99838 * 239.99727 * 5 3 2 7 7 N 1.34782 * 119.99775 * 59.99742 * 5 3 2 8 8 C 1.46497 * 119.99702 * 180.02562 * 7 5 3 9 9 H 1.09003 * 115.49584 * 9.61893 * 8 7 5 10 10 C 1.53003 * 117.44299 * 224.23718 * 8 7 5 11 11 H 1.09002 * 119.53558 * 4.12250 * 10 8 7 12 12 C 1.54387 * 118.90170 * 161.25214 * 10 8 7 13 13 N 1.48144 * 104.61395 * 87.21484 * 12 10 8 14 14 C 1.36939 * 127.83619 * 140.39936 * 13 12 10 15 15 H 1.08005 * 119.99576 * 195.61867 * 14 13 12 16 16 C 1.38803 * 120.00076 * 15.61555 * 14 13 12 17 17 N 1.31623 * 120.00498 * 9.16257 * 16 14 13 18 18 Si 1.86804 * 120.00118 * 189.16201 * 16 14 13 19 19 H 1.48499 * 109.46899 * 89.99939 * 18 16 14 20 20 H 1.48496 * 109.47609 * 210.00099 * 18 16 14 21 21 H 1.48496 * 109.46877 * 330.00361 * 18 16 14 22 22 C 1.48146 * 104.32317 * 320.41353 * 13 12 10 23 23 C 1.53003 * 117.44235 * 155.00053 * 8 7 5 24 24 H 1.09000 * 119.53675 * 355.88314 * 23 8 7 25 25 C 1.52995 * 109.47272 * 302.42341 * 3 2 1 26 26 C 1.52996 * 109.47501 * 305.80195 * 25 3 2 27 27 C 1.53003 * 109.47659 * 179.97438 * 26 25 3 28 28 C 1.53001 * 109.46707 * 59.99336 * 27 26 25 29 29 C 1.53008 * 109.47027 * 180.02562 * 28 27 26 30 30 C 1.52989 * 109.47664 * 300.00417 * 28 27 26 31 31 C 1.53003 * 109.47130 * 185.80011 * 25 3 2 32 32 H 1.09000 * 109.46559 * 305.56576 * 1 2 3 33 33 H 1.08999 * 109.47047 * 65.56329 * 1 2 3 34 34 H 1.08991 * 109.47252 * 185.56595 * 1 2 3 35 35 H 1.09000 * 109.46377 * 239.99925 * 2 1 3 36 36 H 1.08997 * 109.46797 * 120.00104 * 2 1 3 37 37 H 0.96995 * 119.99912 * 0.02562 * 7 5 3 38 38 H 1.08997 * 110.40807 * 205.99676 * 12 10 8 39 39 H 1.09000 * 110.40682 * 328.31486 * 12 10 8 40 40 H 0.96997 * 120.00636 * 179.97438 * 17 16 14 41 41 H 1.09003 * 110.41011 * 280.80239 * 22 13 12 42 42 H 1.09002 * 110.40360 * 158.37239 * 22 13 12 43 43 H 1.09001 * 109.47344 * 65.79928 * 25 3 2 44 44 H 1.09008 * 109.47175 * 299.99861 * 26 25 3 45 45 H 1.09006 * 109.47475 * 59.99992 * 26 25 3 46 46 H 1.08998 * 109.46893 * 300.00086 * 27 26 25 47 47 H 1.08995 * 109.47645 * 180.02562 * 27 26 25 48 48 H 1.09008 * 109.46806 * 60.00863 * 28 27 26 49 49 H 1.08995 * 109.47365 * 180.02562 * 29 28 27 50 50 H 1.09005 * 109.46893 * 300.00773 * 29 28 27 51 51 H 1.08998 * 109.46549 * 60.00122 * 29 28 27 52 52 H 1.08998 * 109.47238 * 300.00047 * 30 28 27 53 53 H 1.09006 * 109.47535 * 179.97438 * 30 28 27 54 54 H 1.09000 * 109.46941 * 300.00128 * 31 25 3 55 55 H 1.08998 * 109.47081 * 60.00290 * 31 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1293 1.4427 -0.0435 5 6 1.5875 2.1353 1.2594 6 8 0.8867 3.1227 1.1900 7 7 1.9616 1.6577 2.4630 8 6 1.5211 2.3309 3.6873 9 1 0.7667 3.1058 3.5512 10 6 2.5626 2.5461 4.7873 11 1 3.5995 2.2613 4.6088 12 6 2.2887 3.6045 5.8774 13 7 1.5176 2.8814 6.9152 14 6 1.6285 2.9945 8.2754 15 1 1.1950 2.2415 8.9170 16 6 2.2980 4.0768 8.8296 17 7 2.6683 5.0829 8.0659 18 14 2.6736 4.1056 10.6592 19 1 3.9979 3.4792 10.9026 20 1 2.6954 5.5110 11.1381 21 1 1.6263 3.3493 11.3914 22 6 0.5998 2.0078 6.1478 23 6 1.4490 1.4933 4.9656 24 1 1.6564 0.4242 4.9200 25 6 1.4809 2.1811 -1.2176 26 6 1.8181 1.3985 -2.4882 27 6 1.2584 2.1368 -3.7058 28 6 1.8803 3.5324 -3.7862 29 6 1.3201 4.2711 -5.0034 30 6 1.5430 4.3151 -2.5156 31 6 2.1034 3.5765 -1.2978 32 1 -0.3632 0.5977 0.8360 33 1 -0.3633 0.4251 -0.9356 34 1 -0.3633 -1.0227 0.0997 35 1 1.8933 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.5224 0.8682 2.5184 38 1 3.2264 3.9762 6.2905 39 1 1.7015 4.4272 5.4693 40 1 3.1358 5.8394 8.4532 41 1 -0.2530 2.5800 5.7825 42 1 0.2632 1.1747 6.7649 43 1 0.3988 2.2709 -1.1227 44 1 2.9004 1.3087 -2.5832 45 1 1.3747 0.4043 -2.4311 46 1 0.1763 2.2262 -3.6106 47 1 1.4983 1.5790 -4.6110 48 1 2.9625 3.4430 -3.8814 49 1 1.7635 5.2651 -5.0610 50 1 1.5601 3.7135 -5.9088 51 1 0.2380 4.3604 -4.9078 52 1 0.4609 4.4045 -2.4205 53 1 1.9865 5.3092 -2.5727 54 1 1.8630 4.1341 -0.3926 55 1 3.1855 3.4867 -1.3927 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713281715.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:52 Heat of formation + Delta-G solvation = -33.347938 kcal Electronic energy + Delta-G solvation = -29791.118057 eV Core-core repulsion = 26020.310348 eV Total energy + Delta-G solvation = -3770.807709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.60959 -40.37043 -39.13810 -36.27695 -36.08547 -34.30524 -32.67800 -32.02507 -31.47531 -29.09958 -28.93175 -27.64796 -26.12140 -24.28428 -23.53075 -22.92708 -22.04010 -21.85971 -20.90941 -20.68386 -20.07572 -18.88387 -17.85907 -17.64568 -16.78574 -16.56161 -16.32728 -15.73554 -15.43591 -15.16127 -15.07563 -15.00864 -14.73834 -14.66754 -14.28329 -14.19583 -13.85914 -13.69295 -13.38323 -13.23171 -13.09210 -12.96600 -12.92337 -12.81387 -12.71861 -12.37571 -12.35291 -12.15083 -12.04723 -12.00718 -11.89261 -11.86112 -11.73247 -11.64543 -11.51815 -11.17402 -11.06161 -10.86500 -10.78977 -10.70613 -10.41056 -9.67391 -8.95176 -7.93425 -5.31147 1.45562 1.47857 1.56982 1.63109 2.01727 2.47281 2.83682 3.26708 3.55039 3.62812 3.70128 3.80070 3.84548 3.91893 3.95643 4.05043 4.10359 4.13752 4.32197 4.36779 4.41225 4.46078 4.48561 4.51371 4.61898 4.66528 4.71050 4.74899 4.81501 4.83270 4.88486 4.90000 4.94957 4.96618 5.05973 5.09449 5.10036 5.21190 5.24364 5.25966 5.27560 5.31425 5.31946 5.40754 5.44201 5.45827 5.48328 5.50215 5.56599 5.61652 5.65307 5.71156 6.14094 6.59504 6.97525 7.31989 7.64941 8.43478 9.20544 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.023568 B = 0.002168 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.755242 B =12914.424806 C =13723.833533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.097 4.097 4 H 0.117 0.883 5 C 0.518 3.482 6 O -0.577 6.577 7 N -0.686 5.686 8 C 0.123 3.877 9 H 0.100 0.900 10 C -0.189 4.189 11 H 0.120 0.880 12 C 0.191 3.809 13 N -0.617 5.617 14 C -0.241 4.241 15 H 0.085 0.915 16 C -0.066 4.066 17 N -0.950 5.950 18 Si 0.984 3.016 19 H -0.283 1.283 20 H -0.296 1.296 21 H -0.265 1.265 22 C 0.149 3.851 23 C -0.160 4.160 24 H 0.139 0.861 25 C -0.060 4.060 26 C -0.110 4.110 27 C -0.112 4.112 28 C -0.090 4.090 29 C -0.147 4.147 30 C -0.110 4.110 31 C -0.121 4.121 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.416 0.584 38 H 0.056 0.944 39 H -0.009 1.009 40 H 0.250 0.750 41 H 0.017 0.983 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.053 0.947 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.051 0.949 50 H 0.064 0.936 51 H 0.049 0.951 52 H 0.047 0.953 53 H 0.054 0.946 54 H 0.045 0.955 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 -13.282 -26.835 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.148 4.148 3 C -0.118 4.118 4 H 0.135 0.865 5 C 0.307 3.693 6 O -0.456 6.456 7 N -0.336 5.336 8 C 0.016 3.984 9 H 0.118 0.882 10 C -0.211 4.211 11 H 0.138 0.862 12 C 0.065 3.935 13 N -0.341 5.341 14 C -0.369 4.369 15 H 0.103 0.897 16 C -0.259 4.259 17 N -0.598 5.598 18 Si 0.812 3.188 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.190 1.190 22 C 0.023 3.977 23 C -0.181 4.181 24 H 0.157 0.843 25 C -0.079 4.079 26 C -0.147 4.147 27 C -0.149 4.149 28 C -0.108 4.108 29 C -0.204 4.204 30 C -0.148 4.148 31 C -0.159 4.159 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.253 0.747 38 H 0.075 0.925 39 H 0.008 0.992 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.070 0.930 50 H 0.083 0.917 51 H 0.068 0.932 52 H 0.065 0.935 53 H 0.072 0.928 54 H 0.064 0.936 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.341 -12.452 -26.685 29.449 hybrid contribution 0.270 0.719 1.492 1.678 sum 0.611 -11.733 -25.193 27.798 Atomic orbital electron populations 1.21854 0.96387 1.01914 1.01253 1.21612 0.95762 0.92771 1.04703 1.21539 1.03058 0.96736 0.90434 0.86494 1.21379 0.78790 0.83668 0.85497 1.90675 1.39317 1.28077 1.87501 1.45259 1.53067 1.31558 1.03684 1.21252 0.98768 0.97877 0.80522 0.88209 1.24385 0.96031 1.01097 0.99553 0.86247 1.20728 0.95774 0.90660 0.86375 1.45503 1.40098 1.47055 1.01431 1.19421 1.31654 1.04670 0.81162 0.89716 1.25823 1.02256 0.95115 1.02736 1.70117 1.44990 1.08609 1.36052 0.84999 0.78345 0.76453 0.79039 1.20953 1.22241 1.18991 1.21251 0.91438 0.93673 0.91310 1.24200 1.01116 0.97774 0.94992 0.84326 1.20891 0.99766 0.94034 0.93206 1.21663 1.01855 0.98825 0.92404 1.21578 0.99833 0.95117 0.98407 1.21143 1.00468 0.95271 0.93945 1.21830 1.00744 1.00198 0.97647 1.21539 1.00098 0.98482 0.94652 1.21678 0.99811 0.96389 0.98006 0.95492 0.92197 0.91235 0.87788 0.90331 0.74695 0.92521 0.99150 0.94114 0.96567 0.91466 0.92375 0.90737 0.90021 0.92853 0.90572 0.90880 0.92968 0.91709 0.93213 0.93457 0.92750 0.93617 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.13 71.99 0.66 -1.76 16 2 C -0.11 -1.27 5.07 30.60 0.16 -1.12 16 3 C -0.10 -1.58 2.10 -11.54 -0.02 -1.61 16 4 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 5 C 0.52 13.44 5.64 87.66 0.49 13.93 16 6 O -0.58 -20.59 13.58 -3.01 -0.04 -20.63 16 7 N -0.69 -16.82 5.44 -442.53 -2.41 -19.23 16 8 C 0.12 4.12 6.03 44.99 0.27 4.39 16 9 H 0.10 4.04 7.40 -2.39 -0.02 4.02 16 10 C -0.19 -7.23 7.03 -9.89 -0.07 -7.30 16 11 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 12 C 0.19 9.79 5.72 86.53 0.50 10.29 16 13 N -0.62 -32.64 3.38 -688.17 -2.33 -34.96 16 14 C -0.24 -13.65 10.35 84.03 0.87 -12.78 16 15 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 16 C -0.07 -3.80 5.40 84.86 0.46 -3.34 16 17 N -0.95 -58.52 10.87 21.65 0.24 -58.29 16 18 Si 0.98 45.91 29.56 68.60 2.03 47.94 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 C 0.15 6.29 7.06 86.53 0.61 6.90 16 23 C -0.16 -5.39 7.03 -9.89 -0.07 -5.46 16 24 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 25 C -0.06 -1.06 0.85 -10.80 -0.01 -1.07 16 26 C -0.11 -1.27 4.61 30.59 0.14 -1.12 16 27 C -0.11 -1.36 5.20 30.60 0.16 -1.20 16 28 C -0.09 -1.26 2.72 -10.79 -0.03 -1.29 16 29 C -0.15 -1.86 9.19 71.98 0.66 -1.20 16 30 C -0.11 -2.11 5.20 30.61 0.16 -1.95 16 31 C -0.12 -2.59 4.96 30.61 0.15 -2.44 16 32 H 0.03 0.58 7.11 -2.39 -0.02 0.56 16 33 H 0.06 0.91 6.43 -2.39 -0.02 0.90 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.71 6.48 -2.39 -0.02 0.69 16 36 H 0.08 0.74 7.50 -2.39 -0.02 0.72 16 37 H 0.42 7.18 8.21 -92.71 -0.76 6.42 16 38 H 0.06 3.26 6.52 -2.39 -0.02 3.24 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.06 1.31 6.64 -2.39 -0.02 1.30 16 44 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.08 0.72 5.99 -2.38 -0.01 0.71 16 46 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 49 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 51 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 54 H 0.05 1.33 6.02 -2.39 -0.01 1.31 16 55 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -72.72 410.34 2.66 -70.06 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.09 Total: 23.23 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 5.08 Total: -8.12 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -4.50 Total: -112.48 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.04 Total: -20.63 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.72 2.66 -70.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713281715.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.707 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds