Wall clock time and date at job start Tue Mar 31 2020 18:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 120.00030 * 2 1 4 4 H 1.08006 * 119.99927 * 202.42128 * 3 2 1 5 5 C 1.38811 * 120.00050 * 22.41296 * 3 2 1 6 6 N 1.31617 * 120.00203 * 18.43955 * 5 3 2 7 7 Si 1.86797 * 119.99916 * 198.44411 * 5 3 2 8 8 H 1.48500 * 109.47342 * 59.99651 * 7 5 3 9 9 H 1.48504 * 109.47199 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47039 * 299.99929 * 7 5 3 11 11 C 1.46497 * 120.00164 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47232 * 270.00351 * 11 2 1 13 13 N 1.46497 * 109.47232 * 180.02562 * 12 11 2 14 14 C 1.46504 * 120.00181 * 269.99923 * 13 12 11 15 15 C 1.34772 * 120.00320 * 89.99851 * 13 12 11 16 16 O 1.21603 * 120.00190 * 1.91241 * 15 13 12 17 17 C 1.47434 * 120.00315 * 181.91122 * 15 13 12 18 18 C 1.41287 * 126.41241 * 353.80716 * 17 15 13 19 19 N 1.30450 * 108.02360 * 180.02562 * 18 17 15 20 20 N 1.39941 * 108.89486 * 0.02562 * 19 18 17 21 21 C 1.46494 * 125.75346 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47376 * 304.97725 * 21 20 19 23 23 C 1.54270 * 110.02932 * 292.16484 * 22 21 20 24 24 C 1.54886 * 104.19731 * 217.10587 * 23 22 21 25 25 C 1.54882 * 102.74906 * 37.94079 * 24 23 22 26 26 C 1.53872 * 110.03617 * 175.00247 * 22 21 20 27 27 C 1.34257 * 108.49215 * 0.02562 * 20 19 18 28 28 H 1.08999 * 109.47418 * 275.19401 * 1 2 3 29 29 H 1.09005 * 109.47011 * 35.19075 * 1 2 3 30 30 H 1.09001 * 109.46827 * 155.19186 * 1 2 3 31 31 H 0.96997 * 120.00313 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.47122 * 150.00457 * 11 2 1 33 33 H 1.09000 * 109.47362 * 30.00007 * 11 2 1 34 34 H 1.08999 * 109.47489 * 60.00005 * 12 11 2 35 35 H 1.09005 * 109.47023 * 299.99818 * 12 11 2 36 36 H 1.08996 * 109.47385 * 240.53044 * 14 13 12 37 37 H 1.09003 * 109.46637 * 0.52910 * 14 13 12 38 38 H 1.08999 * 109.47474 * 120.52086 * 14 13 12 39 39 H 1.07993 * 125.99153 * 359.73511 * 18 17 15 40 40 H 1.09006 * 109.47460 * 64.96963 * 21 20 19 41 41 H 1.08996 * 109.47670 * 184.97266 * 21 20 19 42 42 H 1.08998 * 110.01647 * 53.60068 * 22 21 20 43 43 H 1.09008 * 110.48606 * 335.78212 * 23 22 21 44 44 H 1.09004 * 110.48406 * 98.42177 * 23 22 21 45 45 H 1.08995 * 110.75486 * 279.62660 * 24 23 22 46 46 H 1.09001 * 110.91506 * 156.33339 * 24 23 22 47 47 H 1.09002 * 110.48695 * 203.37754 * 25 24 23 48 48 H 1.09004 * 110.48452 * 80.73525 * 25 24 23 49 49 H 1.09000 * 110.02934 * 238.56970 * 26 22 21 50 50 H 1.08998 * 110.03053 * 359.94843 * 26 22 21 51 51 H 1.07995 * 126.29210 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1685 1.2213 -0.3568 5 6 1.5343 2.3427 0.4583 6 7 0.4605 2.2613 1.2151 7 14 2.2301 4.0148 0.0010 8 1 2.2240 4.1664 -1.4762 9 1 1.3970 5.0816 0.6121 10 1 3.6229 4.1259 0.5042 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1855 -2.9781 1.4438 14 6 2.4536 -4.2473 1.4441 15 6 4.5332 -2.9776 1.4440 16 8 5.1409 -1.9249 1.4789 17 6 5.2710 -4.2534 1.4020 18 6 4.7119 -5.5485 1.4819 19 7 5.6857 -6.4136 1.4096 20 7 6.8964 -5.7235 1.2825 21 6 8.2228 -6.3354 1.1716 22 6 8.4518 -7.2753 2.3570 23 6 8.5616 -6.4614 3.6630 24 6 9.6438 -7.2053 4.4843 25 6 10.6632 -7.6320 3.3991 26 6 9.7880 -8.0195 2.1893 27 6 6.6375 -4.4062 1.2794 28 1 -0.3634 0.0930 1.0234 29 1 -0.3633 0.8399 -0.5923 30 1 -0.3633 -0.9329 -0.4312 31 1 0.0307 3.0696 1.5357 32 1 3.1500 -1.1385 -0.5133 33 1 1.6085 -2.0286 -0.5129 34 1 1.5001 -1.8399 1.9571 35 1 3.0416 -0.9499 1.9568 36 1 2.7099 -4.8143 2.3390 37 1 1.3819 -4.0485 1.4344 38 1 2.7243 -4.8231 0.5591 39 1 3.6629 -5.7814 1.5892 40 1 8.2854 -6.9014 0.2420 41 1 8.9842 -5.5555 1.1739 42 1 7.6325 -7.9905 2.4298 43 1 8.8787 -5.4403 3.4507 44 1 7.6102 -6.4636 4.1950 45 1 9.2199 -8.0782 4.9806 46 1 10.1086 -6.5380 5.2100 47 1 11.2457 -8.4886 3.7386 48 1 11.3196 -6.8000 3.1442 49 1 9.6173 -9.0961 2.1814 50 1 10.2730 -7.7119 1.2629 51 1 7.3644 -3.6120 1.1948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715532483.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:16 Heat of formation + Delta-G solvation = 50.983264 kcal Electronic energy + Delta-G solvation = -28722.529893 eV Core-core repulsion = 24851.838716 eV Total energy + Delta-G solvation = -3870.691177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.46330 -40.41535 -39.19120 -37.74714 -36.43646 -34.53999 -33.42465 -31.49414 -31.04476 -29.74841 -29.49124 -27.90111 -27.76306 -26.34979 -25.21062 -23.14069 -22.35032 -21.93057 -21.52778 -20.68653 -20.20160 -18.79461 -18.39108 -17.28727 -17.18112 -16.86578 -16.61415 -16.36384 -16.04645 -15.86749 -15.50503 -15.27371 -15.02019 -14.74137 -14.34481 -14.22284 -14.13102 -14.08120 -13.88773 -13.76064 -13.33688 -13.15049 -12.82833 -12.70585 -12.51166 -12.37317 -12.21694 -12.08967 -12.07120 -12.04586 -11.97776 -11.96322 -11.94148 -11.58661 -11.56863 -11.31324 -10.80426 -10.65922 -10.51205 -9.80974 -9.56161 -8.74969 -7.85510 -5.31076 0.54722 1.22083 1.40766 1.44714 1.46853 1.53935 2.12953 2.49479 2.52783 3.27023 3.37451 3.57597 3.63885 3.73010 3.81532 3.85658 3.94714 4.14086 4.23985 4.28813 4.33593 4.35624 4.44345 4.49664 4.50870 4.60548 4.63566 4.69109 4.73246 4.74801 4.80415 4.83422 4.85299 4.90887 4.97385 5.04333 5.05118 5.21195 5.22107 5.26078 5.30631 5.39998 5.44794 5.46267 5.60146 5.69011 5.71341 5.88924 6.32390 6.51921 6.60221 7.14452 7.32537 7.85923 8.27468 9.17316 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021506 B = 0.002104 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.658874 B =13302.189908 C =14031.984306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.614 5.614 3 C -0.266 4.266 4 H 0.056 0.944 5 C -0.048 4.048 6 N -0.930 5.930 7 Si 0.963 3.037 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.282 1.282 11 C 0.149 3.851 12 C 0.114 3.886 13 N -0.607 5.607 14 C 0.063 3.937 15 C 0.580 3.420 16 O -0.601 6.601 17 C -0.309 4.309 18 C 0.066 3.934 19 N -0.312 5.312 20 N -0.350 5.350 21 C 0.127 3.873 22 C -0.097 4.097 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.113 4.113 27 C 0.127 3.873 28 H 0.010 0.990 29 H 0.013 0.987 30 H 0.042 0.958 31 H 0.250 0.750 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.231 0.769 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.447 -26.963 2.414 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.337 5.337 3 C -0.396 4.396 4 H 0.074 0.926 5 C -0.244 4.244 6 N -0.576 5.576 7 Si 0.791 3.209 8 H -0.203 1.203 9 H -0.213 1.213 10 H -0.208 1.208 11 C 0.021 3.979 12 C -0.011 4.011 13 N -0.339 5.339 14 C -0.078 4.078 15 C 0.371 3.629 16 O -0.483 6.483 17 C -0.324 4.324 18 C -0.120 4.120 19 N -0.132 5.132 20 N -0.127 5.127 21 C 0.007 3.993 22 C -0.117 4.117 23 C -0.158 4.158 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.151 4.151 27 C -0.026 4.026 28 H 0.028 0.972 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.246 0.754 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.102 0.898 51 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 17.074 -27.648 2.458 32.588 hybrid contribution -0.215 2.371 0.143 2.385 sum 16.859 -25.277 2.602 30.495 Atomic orbital electron populations 1.20619 0.81954 0.96582 0.98060 1.44180 1.02475 1.01321 1.85769 1.19334 0.98020 0.86729 1.35550 0.92626 1.25686 0.99143 1.01551 0.98040 1.70205 1.23716 1.27765 1.35878 0.85404 0.77528 0.79818 0.78109 1.20321 1.21343 1.20803 1.21157 0.95095 0.87263 0.94338 1.22032 0.95095 0.84169 0.99801 1.47772 1.05251 1.08097 1.72783 1.22563 0.98186 0.84263 1.02771 1.17819 0.81974 0.87853 0.75224 1.90763 1.68987 1.34962 1.53592 1.20128 0.93890 0.93465 1.24931 1.25515 1.01219 0.88744 0.96543 1.77110 0.89637 1.21513 1.24917 1.48797 1.07645 1.03493 1.52784 1.22440 0.77617 0.98572 1.00627 1.22023 0.99516 0.96805 0.93324 1.22404 0.98615 0.98999 0.95776 1.22495 0.96183 0.99860 0.97778 1.22373 0.97353 1.01597 0.94709 1.22130 0.93222 1.00262 0.99480 1.23161 0.96757 0.87710 0.94988 0.97175 0.96794 0.93958 0.94073 0.95766 0.91347 0.90408 0.94477 0.89647 0.88992 0.89712 0.75363 0.87885 0.86178 0.90891 0.91798 0.93802 0.91681 0.91429 0.90765 0.90974 0.90857 0.89842 0.78741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.52 9.06 127.77 1.16 9.68 16 2 N -0.61 -32.42 2.92 -726.93 -2.12 -34.55 16 3 C -0.27 -15.76 9.63 84.03 0.81 -14.95 16 4 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 5 C -0.05 -2.85 4.98 84.86 0.42 -2.43 16 6 N -0.93 -56.48 11.00 21.65 0.24 -56.24 16 7 Si 0.96 47.62 29.59 68.60 2.03 49.65 16 8 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 9 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 10 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 11 C 0.15 6.52 6.03 86.38 0.52 7.04 16 12 C 0.11 4.67 5.71 86.38 0.49 5.17 16 13 N -0.61 -19.59 2.87 -850.66 -2.44 -22.03 16 14 C 0.06 1.24 8.55 127.77 1.09 2.33 16 15 C 0.58 20.79 7.67 86.67 0.66 21.45 16 16 O -0.60 -27.66 16.47 -4.04 -0.07 -27.72 16 17 C -0.31 -8.38 6.04 -20.15 -0.12 -8.50 16 18 C 0.07 1.40 9.91 85.65 0.85 2.25 16 19 N -0.31 -6.73 12.24 -56.28 -0.69 -7.42 16 20 N -0.35 -6.58 3.47 -346.31 -1.20 -7.79 16 21 C 0.13 1.42 5.54 86.38 0.48 1.90 16 22 C -0.10 -1.11 3.03 -10.07 -0.03 -1.14 16 23 C -0.12 -1.65 6.19 31.67 0.20 -1.46 16 24 C -0.13 -1.37 6.91 31.88 0.22 -1.15 16 25 C -0.12 -0.95 6.83 31.67 0.22 -0.74 16 26 C -0.11 -0.82 6.46 31.32 0.20 -0.62 16 27 C 0.13 2.90 11.25 84.28 0.95 3.85 16 28 H 0.01 0.53 7.35 -2.39 -0.02 0.52 16 29 H 0.01 0.72 7.45 -2.38 -0.02 0.70 16 30 H 0.04 1.70 7.83 -2.39 -0.02 1.68 16 31 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.02 1.15 8.03 -2.39 -0.02 1.13 16 33 H 0.07 2.53 7.86 -2.39 -0.02 2.51 16 34 H 0.08 2.99 7.93 -2.39 -0.02 2.97 16 35 H 0.04 1.87 7.39 -2.38 -0.02 1.86 16 36 H 0.09 1.29 6.33 -2.39 -0.02 1.28 16 37 H 0.09 1.58 7.80 -2.39 -0.02 1.56 16 38 H 0.08 1.34 6.63 -2.39 -0.02 1.32 16 39 H 0.23 3.38 4.17 -2.91 -0.01 3.37 16 40 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.12 0.86 7.92 -2.39 -0.02 0.84 16 42 H 0.07 1.09 8.03 -2.39 -0.02 1.08 16 43 H 0.06 0.90 7.76 -2.38 -0.02 0.88 16 44 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 49 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.08 0.38 7.67 -2.39 -0.02 0.36 16 51 H 0.20 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -79.35 405.07 4.77 -74.58 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.90 Total: 8.83 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 8.12 Total: 22.69 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -6.22 Total: -128.03 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.07 Total: -27.72 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -79.35 4.77 -74.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715532483.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.563 kcal (2) G-P(sol) polarization free energy of solvation -79.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds