Wall clock time and date at job start Tue Mar 31 2020 18:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99545 * 2 1 4 4 H 1.48501 * 109.46982 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47182 * 299.99839 * 3 2 1 6 6 H 1.48497 * 109.47494 * 59.99958 * 3 2 1 7 7 C 1.38808 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00305 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00135 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47578 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47103 * 54.99567 * 11 10 9 13 13 C 1.52997 * 109.47482 * 174.99814 * 11 10 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 11 16 16 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 17 17 C 1.52997 * 109.47415 * 180.02562 * 15 14 13 18 18 N 1.46493 * 109.47228 * 175.00130 * 17 15 14 19 19 C 1.34782 * 120.00325 * 180.02562 * 18 17 15 20 20 O 1.21286 * 119.99590 * 359.97438 * 19 18 17 21 21 C 1.50694 * 120.00477 * 180.02562 * 19 18 17 22 22 H 1.09001 * 109.61659 * 59.63581 * 21 19 18 23 23 C 1.53300 * 109.61322 * 299.09982 * 21 19 18 24 24 C 1.53790 * 107.93357 * 165.19462 * 23 21 19 25 25 C 1.52716 * 109.66722 * 55.96744 * 24 23 21 26 26 H 1.08993 * 115.39080 * 126.98365 * 25 24 23 27 27 C 1.53659 * 115.14377 * 268.38423 * 25 24 23 28 28 C 1.52072 * 120.52294 * 336.72116 * 25 24 23 29 29 H 1.08995 * 115.93107 * 151.11253 * 28 25 24 30 30 C 1.52071 * 120.01952 * 6.39358 * 28 25 24 31 31 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 32 32 C 1.52999 * 109.46961 * 295.00174 * 11 10 9 33 33 H 0.97001 * 120.00806 * 0.02562 * 1 2 3 34 34 H 0.96998 * 120.00328 * 359.97438 * 9 7 2 35 35 H 1.09001 * 109.47096 * 59.99270 * 10 9 7 36 36 H 1.09002 * 109.46667 * 299.99558 * 10 9 7 37 37 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 38 38 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 39 39 H 1.08992 * 109.47399 * 59.99823 * 14 13 11 40 40 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.46818 * 295.00198 * 17 15 14 42 42 H 1.09001 * 109.47096 * 55.00094 * 17 15 14 43 43 H 0.97003 * 120.00270 * 0.02562 * 18 17 15 44 44 H 1.09003 * 109.61774 * 285.54864 * 23 21 19 45 45 H 1.08997 * 109.62525 * 46.09886 * 23 21 19 46 46 H 1.08996 * 111.06083 * 294.97830 * 24 23 21 47 47 H 1.08995 * 108.00413 * 175.06252 * 24 23 21 48 48 H 1.08999 * 117.53683 * 4.69404 * 27 25 24 49 49 H 1.08995 * 117.53439 * 219.44814 * 27 25 24 50 50 H 1.09004 * 109.27027 * 218.03161 * 30 28 25 51 51 H 1.08996 * 109.24084 * 98.54446 * 30 28 25 52 52 H 1.09002 * 109.47153 * 60.00231 * 31 15 14 53 53 H 1.09001 * 109.47289 * 180.02562 * 31 15 14 54 54 H 1.09000 * 109.47486 * 59.99547 * 32 11 10 55 55 H 1.09002 * 109.46716 * 299.99630 * 32 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0641 -4.8197 0.0021 12 1 0.3803 -4.7134 -0.8400 13 6 1.8250 -6.1412 -0.1225 14 6 0.8308 -7.3041 -0.1228 15 6 0.0350 -7.2951 1.1840 16 1 0.7186 -7.4015 2.0264 17 6 -0.9588 -8.4583 1.1841 18 7 -1.6360 -8.5219 2.4815 19 6 -2.5606 -9.4749 2.7132 20 8 -2.8322 -10.2795 1.8472 21 6 -3.2577 -9.5399 4.0476 22 1 -3.7874 -8.6049 4.2298 23 6 -2.2257 -9.7756 5.1564 24 6 -2.8993 -9.4663 6.5039 25 6 -4.1589 -10.3163 6.6558 26 1 -4.2213 -10.8993 7.5746 27 6 -5.4537 -9.6607 6.1510 28 6 -4.8701 -10.8691 5.4306 29 1 -5.4117 -11.8039 5.5752 30 6 -4.2512 -10.7018 4.0516 31 6 -0.7259 -5.9736 1.3086 32 6 0.2688 -4.8103 1.3091 33 1 -0.4851 0.8400 -0.0004 34 1 0.3557 -2.3881 0.0005 35 1 2.6843 -3.7140 0.8921 36 1 2.6855 -3.7148 -0.8879 37 1 2.5089 -6.2475 0.7196 38 1 2.3916 -6.1478 -1.0537 39 1 0.1473 -7.1976 -0.9650 40 1 1.3730 -8.2456 -0.2111 41 1 -1.6964 -8.3060 0.3963 42 1 -0.4252 -9.3921 1.0067 43 1 -1.4191 -7.8782 3.1740 44 1 -1.8882 -10.8116 5.1281 45 1 -1.3765 -9.1072 5.0141 46 1 -3.1643 -8.4115 6.5764 47 1 -2.1960 -9.7176 7.2977 48 1 -5.3694 -8.6916 5.6593 49 1 -6.3584 -9.8134 6.7394 50 1 -5.0394 -10.5035 3.3252 51 1 -3.7319 -11.6199 3.7772 52 1 -1.4094 -5.8671 0.4663 53 1 -1.2924 -5.9669 2.2398 54 1 -0.2733 -3.8689 1.3979 55 1 0.9527 -4.9166 2.1512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724610647.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:49 Heat of formation + Delta-G solvation = -66.477479 kcal Electronic energy + Delta-G solvation = -28927.946531 eV Core-core repulsion = 25155.702217 eV Total energy + Delta-G solvation = -3772.244314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.47806 -40.18467 -39.39923 -36.94577 -35.58344 -34.31839 -33.46164 -31.72679 -31.63839 -31.52712 -28.25397 -26.42190 -25.33957 -24.23113 -24.00303 -23.20399 -22.18977 -21.56638 -21.21614 -20.60586 -19.43558 -19.14724 -18.40328 -17.10780 -16.68754 -16.58114 -16.30802 -16.08137 -15.58489 -15.30431 -15.25506 -15.07116 -14.88325 -14.65243 -14.61072 -14.50657 -14.35206 -13.89350 -13.49155 -13.37510 -13.12167 -13.03109 -13.00335 -12.87701 -12.59161 -12.49242 -12.43082 -12.11420 -12.04493 -11.95483 -11.94158 -11.86450 -11.75568 -11.51655 -11.31076 -11.06583 -10.93355 -10.82205 -10.72313 -10.63860 -10.51472 -10.04879 -8.98041 -7.95348 -5.23506 1.46495 1.47365 1.57557 1.63327 2.21684 2.55793 2.85570 3.37987 3.57322 3.65165 3.73262 3.77562 3.79093 3.85080 3.98853 4.01516 4.07376 4.13100 4.23062 4.30518 4.36574 4.43361 4.46256 4.56337 4.57038 4.60217 4.63594 4.66292 4.67409 4.77793 4.82004 4.89136 4.95901 4.96845 5.00499 5.06275 5.11054 5.12745 5.20412 5.21920 5.25028 5.27623 5.30179 5.31704 5.34628 5.35052 5.42126 5.44420 5.47271 5.52378 5.61315 5.68318 6.27671 6.55595 7.25408 7.33533 8.11522 8.34585 9.28512 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.001944 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.102681 B =14397.985008 C =15527.065091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.153 3.847 11 C -0.086 4.086 12 H 0.052 0.948 13 C -0.102 4.102 14 C -0.105 4.105 15 C -0.084 4.084 16 H 0.091 0.909 17 C 0.129 3.871 18 N -0.717 5.717 19 C 0.514 3.486 20 O -0.587 6.587 21 C -0.103 4.103 22 H 0.110 0.890 23 C -0.105 4.105 24 C -0.088 4.088 25 C -0.148 4.148 26 H 0.110 0.890 27 C -0.186 4.186 28 C -0.146 4.146 29 H 0.104 0.896 30 C -0.065 4.065 31 C -0.106 4.106 32 C -0.103 4.103 33 H 0.251 0.749 34 H 0.374 0.626 35 H 0.019 0.981 36 H 0.014 0.986 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.413 0.587 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.058 0.942 51 H 0.061 0.939 52 H 0.052 0.948 53 H 0.071 0.929 54 H 0.037 0.963 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -24.930 13.617 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.027 3.973 11 C -0.105 4.105 12 H 0.071 0.929 13 C -0.140 4.140 14 C -0.143 4.143 15 C -0.103 4.103 16 H 0.110 0.890 17 C 0.005 3.995 18 N -0.369 5.369 19 C 0.301 3.699 20 O -0.467 6.467 21 C -0.125 4.125 22 H 0.128 0.872 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.166 4.166 26 H 0.129 0.871 27 C -0.223 4.223 28 C -0.164 4.164 29 H 0.122 0.878 30 C -0.103 4.103 31 C -0.143 4.143 32 C -0.140 4.140 33 H 0.060 0.940 34 H 0.206 0.794 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.250 0.750 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.113 0.887 49 H 0.116 0.884 50 H 0.077 0.923 51 H 0.080 0.920 52 H 0.070 0.930 53 H 0.090 0.910 54 H 0.055 0.945 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.660 -25.398 12.994 29.085 hybrid contribution -0.176 1.564 -0.144 1.581 sum -5.836 -23.834 12.850 27.699 Atomic orbital electron populations 1.69822 1.06592 1.25966 1.59732 1.25576 0.96443 1.01123 1.03881 0.85066 0.78210 0.79760 0.76691 1.19072 1.22111 1.21880 1.19695 0.91487 0.85549 1.40868 0.90810 1.42618 1.05639 1.01215 1.89226 1.20893 0.94066 0.85151 0.97186 1.21237 0.96775 0.94481 0.97992 0.92903 1.21442 0.97668 0.92424 1.02457 1.21459 0.97680 0.98569 0.96623 1.21311 0.96377 0.92742 0.99866 0.89034 1.21342 0.94689 0.98579 0.84901 1.46006 1.40798 1.33009 1.17070 1.21104 0.79079 0.79837 0.89857 1.90681 1.65461 1.42145 1.48403 1.21410 0.97673 1.01884 0.91486 0.87234 1.21757 0.96648 1.02694 0.93168 1.21270 0.94994 0.99465 0.96799 1.22384 0.93777 1.02500 0.97915 0.87148 1.23241 0.97792 0.97186 1.04078 1.21808 1.03436 0.98830 0.92339 0.87822 1.20548 0.97193 0.97435 0.95150 1.21559 0.97281 0.93555 1.01943 1.21422 0.97883 0.97701 0.97040 0.94028 0.79404 0.96265 0.96839 0.91003 0.91662 0.92221 0.89938 0.92900 0.91533 0.74992 0.91415 0.90021 0.90267 0.90190 0.88701 0.88357 0.92333 0.91994 0.92962 0.90993 0.94464 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -38.37 5.33 -343.45 -1.83 -40.21 16 10 C 0.15 6.14 5.65 86.38 0.49 6.63 16 11 C -0.09 -2.65 2.22 -10.80 -0.02 -2.68 16 12 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 13 C -0.10 -2.30 5.20 30.59 0.16 -2.15 16 14 C -0.11 -1.93 5.20 30.60 0.16 -1.77 16 15 C -0.08 -1.44 2.22 -10.79 -0.02 -1.46 16 16 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 17 C 0.13 2.32 5.07 86.38 0.44 2.76 16 18 N -0.72 -11.58 5.08 -463.07 -2.35 -13.93 16 19 C 0.51 10.35 7.15 87.65 0.63 10.98 16 20 O -0.59 -17.00 15.92 -3.05 -0.05 -17.05 16 21 C -0.10 -1.48 2.27 -11.48 -0.03 -1.51 16 22 H 0.11 1.34 7.10 -2.39 -0.02 1.32 16 23 C -0.10 -1.11 5.30 30.96 0.16 -0.94 16 24 C -0.09 -0.77 5.83 30.77 0.18 -0.59 16 25 C -0.15 -1.52 6.22 -10.97 -0.07 -1.59 16 26 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 27 C -0.19 -2.05 9.61 30.59 0.29 -1.76 16 28 C -0.15 -1.85 6.00 -11.63 -0.07 -1.92 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 C -0.07 -1.07 4.58 30.24 0.14 -0.93 16 31 C -0.11 -2.28 5.08 30.61 0.16 -2.13 16 32 C -0.10 -2.96 5.08 30.61 0.16 -2.81 16 33 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.37 20.46 6.85 -92.71 -0.63 19.83 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.41 4.70 7.06 -92.71 -0.65 4.05 16 44 H 0.07 0.83 8.04 -2.39 -0.02 0.81 16 45 H 0.08 0.67 7.33 -2.39 -0.02 0.65 16 46 H 0.08 0.62 8.03 -2.39 -0.02 0.61 16 47 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.09 1.06 7.27 -2.39 -0.02 1.04 16 49 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 51 H 0.06 1.18 7.93 -2.39 -0.02 1.16 16 52 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 53 H 0.07 1.33 7.18 -2.39 -0.02 1.31 16 54 H 0.04 1.35 7.18 -2.39 -0.02 1.33 16 55 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -70.63 416.97 1.70 -68.93 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.44 Total: 32.34 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.05 Total: -18.95 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -3.90 Total: -113.81 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.05 Total: -17.05 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -70.63 1.70 -68.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724610647.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.455 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds