Wall clock time and date at job start Tue Mar 31 2020 18:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00054 * 2 1 4 4 C 1.52995 * 109.46836 * 270.00317 * 3 2 1 5 5 C 1.53005 * 109.46995 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47047 * 179.97438 * 5 4 3 7 7 C 1.36946 * 119.99844 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99865 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99893 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99875 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00063 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47378 * 59.99386 * 11 9 7 13 13 H 1.48494 * 109.47515 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46998 * 299.99807 * 11 9 7 15 15 C 1.34776 * 119.99954 * 180.02562 * 2 1 3 16 16 O 1.21568 * 120.00147 * 183.52331 * 15 2 1 17 17 C 1.47715 * 119.99770 * 3.51897 * 15 2 1 18 18 C 1.41504 * 126.51532 * 173.45840 * 17 15 2 19 19 C 1.35360 * 105.50463 * 179.97438 * 18 17 15 20 20 C 1.50697 * 126.38849 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47281 * 144.99974 * 20 19 18 22 22 C 1.52999 * 109.47344 * 179.97438 * 21 20 19 23 23 C 1.52993 * 109.47444 * 300.00213 * 22 21 20 24 24 C 1.52995 * 109.47024 * 59.99592 * 23 22 21 25 25 C 1.52996 * 109.47185 * 264.99797 * 20 19 18 26 26 N 1.35036 * 107.22734 * 0.26092 * 19 18 17 27 27 H 0.97003 * 124.88685 * 179.71210 * 26 19 18 28 28 N 1.28475 * 110.22956 * 359.54949 * 26 19 18 29 29 H 1.09009 * 109.47067 * 264.08495 * 1 2 3 30 30 H 1.08996 * 109.47321 * 24.08389 * 1 2 3 31 31 H 1.09004 * 109.47285 * 144.08641 * 1 2 3 32 32 H 1.09004 * 109.46794 * 29.99858 * 3 2 1 33 33 H 1.08997 * 109.47008 * 149.99795 * 3 2 1 34 34 H 1.09004 * 109.47055 * 299.99382 * 4 3 2 35 35 H 1.08997 * 109.47748 * 59.99931 * 4 3 2 36 36 H 1.09004 * 109.46563 * 299.99497 * 5 4 3 37 37 H 1.08997 * 109.47081 * 59.99337 * 5 4 3 38 38 H 0.96999 * 120.00621 * 359.97438 * 6 5 4 39 39 H 0.97009 * 119.99731 * 179.97438 * 10 9 7 40 40 H 1.07994 * 127.24854 * 359.95806 * 18 17 15 41 41 H 1.08998 * 109.47032 * 25.00341 * 20 19 18 42 42 H 1.09009 * 109.47508 * 60.00111 * 21 20 19 43 43 H 1.09004 * 109.47599 * 300.00511 * 21 20 19 44 44 H 1.08998 * 109.46909 * 60.00403 * 22 21 20 45 45 H 1.09007 * 109.47110 * 179.97438 * 22 21 20 46 46 H 1.09001 * 109.47662 * 179.97438 * 23 22 21 47 47 H 1.09008 * 109.47205 * 300.00034 * 23 22 21 48 48 H 1.08999 * 109.47528 * 60.00212 * 24 23 22 49 49 H 1.09007 * 109.47378 * 180.02562 * 24 23 22 50 50 H 1.09007 * 109.47107 * 60.00063 * 25 20 19 51 51 H 1.08998 * 109.47580 * 300.00208 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2180 3.0351 -1.4425 6 7 3.4626 3.4577 -2.8237 7 6 4.1368 4.6231 -3.0740 8 1 4.4878 5.2308 -2.2531 9 6 4.3682 5.0238 -4.3827 10 7 3.9399 4.2834 -5.3831 11 14 5.2872 6.6138 -4.7241 12 1 6.6446 6.5392 -4.1265 13 1 5.4030 6.8135 -6.1910 14 1 4.5450 7.7527 -4.1261 15 6 2.1389 -1.1672 -0.0005 16 8 3.3528 -1.1683 0.0642 17 6 1.4023 -2.4452 -0.0796 18 6 1.9669 -3.7351 -0.2196 19 6 0.9168 -4.5888 -0.2462 20 6 0.9866 -6.0880 -0.3822 21 6 -0.1304 -6.7277 0.4448 22 6 -0.0600 -8.2497 0.3062 23 6 -0.2289 -8.6364 -1.1644 24 6 0.8881 -7.9967 -1.9914 25 6 0.8179 -6.4751 -1.8528 26 7 -0.2054 -3.8460 -0.1345 27 1 -1.1079 -4.2015 -0.1294 28 7 0.0944 -2.6009 -0.0326 29 1 -0.3634 -0.1059 1.0223 30 1 -0.3634 0.9382 -0.4193 31 1 -0.3634 -0.8323 -0.6028 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 3.0416 0.9507 -1.9563 35 1 1.5001 1.8407 -1.9563 36 1 2.6292 3.7949 -0.9286 37 1 4.1704 2.9043 -0.9288 38 1 3.1477 2.9117 -3.5610 39 1 4.1013 4.5636 -6.2977 40 1 3.0150 -3.9858 -0.2906 41 1 1.9529 -6.4409 -0.0220 42 1 -1.0969 -6.3748 0.0847 43 1 -0.0105 -6.4519 1.4925 44 1 0.9063 -8.6030 0.6661 45 1 -0.8556 -8.7055 0.8958 46 1 -0.1783 -9.7207 -1.2633 47 1 -1.1953 -8.2831 -1.5244 48 1 1.8545 -8.3498 -1.6316 49 1 0.7675 -8.2717 -3.0393 50 1 1.6138 -6.0193 -2.4420 51 1 -0.1484 -6.1221 -2.2129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733106865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:35 Heat of formation + Delta-G solvation = 31.075182 kcal Electronic energy + Delta-G solvation = -28150.802977 eV Core-core repulsion = 24279.248521 eV Total energy + Delta-G solvation = -3871.554456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.01520 -39.55773 -38.86806 -36.05730 -34.74013 -33.15629 -32.39893 -31.81505 -31.26339 -29.83138 -29.01197 -26.78043 -25.75235 -23.85709 -23.46806 -23.09523 -22.07931 -21.33756 -20.81715 -20.33729 -18.82509 -18.15960 -16.96997 -16.84349 -16.10578 -15.96604 -15.58119 -14.94237 -14.80209 -14.64923 -14.63019 -14.51700 -14.25483 -13.87691 -13.59902 -13.23137 -13.05309 -12.93570 -12.89552 -12.74909 -12.61465 -12.51216 -11.89506 -11.80784 -11.78233 -11.71462 -11.11494 -10.86188 -10.82842 -10.77526 -10.73476 -10.68820 -10.63249 -10.29312 -10.08226 -9.92336 -9.63755 -9.56877 -9.18984 -8.78419 -8.51851 -6.83139 -5.68106 -2.96503 1.43195 1.89122 2.54991 3.08128 3.41625 3.50161 3.53707 3.55382 3.93977 4.08551 4.20277 4.26474 4.53035 4.62913 4.67062 4.70244 4.87420 4.88603 4.94059 4.96492 5.08151 5.22568 5.26822 5.36042 5.40212 5.44229 5.45313 5.48906 5.55329 5.58740 5.64069 5.65323 5.67626 5.71879 5.79827 5.80824 5.87880 5.90439 6.03237 6.18101 6.20890 6.39762 6.49079 6.62724 6.76467 6.96774 6.98855 7.41186 7.64548 7.77203 8.24549 8.50988 9.61521 10.21031 10.55723 11.54998 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.001806 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.713294 B =15501.744617 C =16269.634231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.119 3.881 4 C -0.139 4.139 5 C 0.156 3.844 6 N -0.733 5.733 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.596 3.404 16 O -0.528 6.528 17 C -0.001 4.001 18 C -0.174 4.174 19 C 0.023 3.977 20 C -0.017 4.017 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.113 4.113 26 N -0.383 5.383 27 H 0.441 0.559 28 N -0.256 5.256 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.018 0.982 37 H 0.021 0.979 38 H 0.383 0.617 39 H 0.255 0.745 40 H 0.162 0.838 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 -29.283 13.701 35.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.334 5.334 3 C -0.004 4.004 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.377 5.377 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.382 3.618 16 O -0.403 6.403 17 C -0.162 4.162 18 C -0.202 4.202 19 C -0.102 4.102 20 C -0.037 4.037 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.158 4.158 25 C -0.151 4.151 26 N -0.097 5.097 27 H 0.285 0.715 28 N -0.092 5.092 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.039 0.961 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.179 0.821 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.531 -28.471 13.867 34.843 hybrid contribution 0.464 0.168 -0.642 0.810 sum -14.067 -28.303 13.225 34.261 Atomic orbital electron populations 1.22103 0.78808 1.03714 1.02183 1.47728 1.07559 1.05817 1.72283 1.21547 0.97590 0.83174 0.98056 1.22067 1.01108 0.98961 0.95666 1.20547 0.96062 0.91900 0.88673 1.42351 1.68274 1.25971 1.01140 1.19222 1.27717 0.98189 0.91791 0.91179 1.24754 1.01820 0.99081 0.95573 1.69664 1.51630 1.38973 0.98134 0.86238 0.79713 0.83287 0.76784 1.21267 1.21731 1.21305 1.16993 0.86200 0.81729 0.76853 1.90814 1.12759 1.86570 1.50122 1.21960 0.89618 0.95394 1.09227 1.21510 1.00073 0.90192 1.08422 1.21336 0.86701 0.95199 1.07002 1.19837 1.01163 0.85960 0.96756 1.21629 0.97806 0.96123 1.00070 1.21509 1.02353 0.94939 0.96753 1.21571 0.98992 1.00344 0.95065 1.21537 0.99204 0.94768 1.00243 1.21613 1.02640 0.96171 0.94685 1.43411 1.09331 1.03746 1.53198 0.71476 1.73758 1.16458 0.99243 1.19745 0.92824 0.91164 0.88962 0.90309 0.89548 0.91576 0.91962 0.96369 0.96128 0.78325 0.93542 0.82079 0.88340 0.92243 0.91318 0.91522 0.91718 0.91854 0.92006 0.91572 0.91596 0.90976 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.63 59.85 0.58 1.42 16 2 N -0.60 -8.63 2.87 -182.74 -0.53 -9.16 16 3 C 0.12 1.79 5.41 -4.04 -0.02 1.77 16 4 C -0.14 -2.53 5.65 -26.73 -0.15 -2.69 16 5 C 0.16 3.39 6.26 -4.04 -0.03 3.36 16 6 N -0.73 -19.95 5.60 -59.91 -0.34 -20.29 16 7 C -0.24 -7.02 9.99 -15.05 -0.15 -7.18 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 10 N -0.94 -29.47 13.06 55.49 0.72 -28.75 16 11 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 C 0.60 9.53 7.68 -12.39 -0.10 9.44 16 16 O -0.53 -10.14 16.49 5.31 0.09 -10.06 16 17 C 0.00 -0.02 6.82 -82.76 -0.56 -0.58 16 18 C -0.17 -1.97 10.73 -39.36 -0.42 -2.39 16 19 C 0.02 0.19 5.92 -82.21 -0.49 -0.30 16 20 C -0.02 -0.09 2.59 -91.78 -0.24 -0.33 16 21 C -0.12 -0.47 4.96 -26.73 -0.13 -0.60 16 22 C -0.12 -0.42 5.92 -26.73 -0.16 -0.58 16 23 C -0.12 -0.46 5.92 -26.74 -0.16 -0.61 16 24 C -0.12 -0.52 5.92 -26.76 -0.16 -0.68 16 25 C -0.11 -0.60 5.18 -26.76 -0.14 -0.74 16 26 N -0.38 -2.95 6.64 33.50 0.22 -2.73 16 27 H 0.44 1.93 8.15 -190.43 -1.55 0.38 16 28 N -0.26 -2.76 8.76 33.42 0.29 -2.47 16 29 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 31 H 0.09 1.03 5.35 -51.93 -0.28 0.76 16 32 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 33 H 0.09 1.39 7.37 -51.93 -0.38 1.01 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.38 10.96 7.67 -40.82 -0.31 10.64 16 39 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 40 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.19 7.44 -51.92 -0.39 -0.20 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -35.71 406.80 -10.91 -46.62 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -10.06 Total: 3.79 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.42 Total: -1.27 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.38 Total: -63.40 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.71 -10.91 -46.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733106865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.694 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds