Wall clock time and date at job start Tue Mar 31 2020 18:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00054 * 2 1 4 4 C 1.52995 * 109.46836 * 270.00317 * 3 2 1 5 5 C 1.53005 * 109.46995 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47047 * 179.97438 * 5 4 3 7 7 C 1.36946 * 119.99844 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99865 * 359.97438 * 7 6 5 9 9 C 1.38811 * 119.99893 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99875 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00063 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47378 * 59.99386 * 11 9 7 13 13 H 1.48494 * 109.47515 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46998 * 299.99807 * 11 9 7 15 15 C 1.34776 * 119.99954 * 180.02562 * 2 1 3 16 16 O 1.21568 * 120.00147 * 183.52331 * 15 2 1 17 17 C 1.47715 * 119.99770 * 3.51897 * 15 2 1 18 18 C 1.41504 * 126.51532 * 173.45840 * 17 15 2 19 19 C 1.35360 * 105.50463 * 179.97438 * 18 17 15 20 20 C 1.50697 * 126.38849 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47281 * 144.99974 * 20 19 18 22 22 C 1.52999 * 109.47344 * 179.97438 * 21 20 19 23 23 C 1.52993 * 109.47444 * 300.00213 * 22 21 20 24 24 C 1.52995 * 109.47024 * 59.99592 * 23 22 21 25 25 C 1.52996 * 109.47185 * 264.99797 * 20 19 18 26 26 N 1.35036 * 107.22734 * 0.26092 * 19 18 17 27 27 H 0.97003 * 124.88685 * 179.71210 * 26 19 18 28 28 N 1.28475 * 110.22956 * 359.54949 * 26 19 18 29 29 H 1.09009 * 109.47067 * 264.08495 * 1 2 3 30 30 H 1.08996 * 109.47321 * 24.08389 * 1 2 3 31 31 H 1.09004 * 109.47285 * 144.08641 * 1 2 3 32 32 H 1.09004 * 109.46794 * 29.99858 * 3 2 1 33 33 H 1.08997 * 109.47008 * 149.99795 * 3 2 1 34 34 H 1.09004 * 109.47055 * 299.99382 * 4 3 2 35 35 H 1.08997 * 109.47748 * 59.99931 * 4 3 2 36 36 H 1.09004 * 109.46563 * 299.99497 * 5 4 3 37 37 H 1.08997 * 109.47081 * 59.99337 * 5 4 3 38 38 H 0.96999 * 120.00621 * 359.97438 * 6 5 4 39 39 H 0.97009 * 119.99731 * 179.97438 * 10 9 7 40 40 H 1.07994 * 127.24854 * 359.95806 * 18 17 15 41 41 H 1.08998 * 109.47032 * 25.00341 * 20 19 18 42 42 H 1.09009 * 109.47508 * 60.00111 * 21 20 19 43 43 H 1.09004 * 109.47599 * 300.00511 * 21 20 19 44 44 H 1.08998 * 109.46909 * 60.00403 * 22 21 20 45 45 H 1.09007 * 109.47110 * 179.97438 * 22 21 20 46 46 H 1.09001 * 109.47662 * 179.97438 * 23 22 21 47 47 H 1.09008 * 109.47205 * 300.00034 * 23 22 21 48 48 H 1.08999 * 109.47528 * 60.00212 * 24 23 22 49 49 H 1.09007 * 109.47378 * 180.02562 * 24 23 22 50 50 H 1.09007 * 109.47107 * 60.00063 * 25 20 19 51 51 H 1.08998 * 109.47580 * 300.00208 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2180 3.0351 -1.4425 6 7 3.4626 3.4577 -2.8237 7 6 4.1368 4.6231 -3.0740 8 1 4.4878 5.2308 -2.2531 9 6 4.3682 5.0238 -4.3827 10 7 3.9399 4.2834 -5.3831 11 14 5.2872 6.6138 -4.7241 12 1 6.6446 6.5392 -4.1265 13 1 5.4030 6.8135 -6.1910 14 1 4.5450 7.7527 -4.1261 15 6 2.1389 -1.1672 -0.0005 16 8 3.3528 -1.1683 0.0642 17 6 1.4023 -2.4452 -0.0796 18 6 1.9669 -3.7351 -0.2196 19 6 0.9168 -4.5888 -0.2462 20 6 0.9866 -6.0880 -0.3822 21 6 -0.1304 -6.7277 0.4448 22 6 -0.0600 -8.2497 0.3062 23 6 -0.2289 -8.6364 -1.1644 24 6 0.8881 -7.9967 -1.9914 25 6 0.8179 -6.4751 -1.8528 26 7 -0.2054 -3.8460 -0.1345 27 1 -1.1079 -4.2015 -0.1294 28 7 0.0944 -2.6009 -0.0326 29 1 -0.3634 -0.1059 1.0223 30 1 -0.3634 0.9382 -0.4193 31 1 -0.3634 -0.8323 -0.6028 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 3.0416 0.9507 -1.9563 35 1 1.5001 1.8407 -1.9563 36 1 2.6292 3.7949 -0.9286 37 1 4.1704 2.9043 -0.9288 38 1 3.1477 2.9117 -3.5610 39 1 4.1013 4.5636 -6.2977 40 1 3.0150 -3.9858 -0.2906 41 1 1.9529 -6.4409 -0.0220 42 1 -1.0969 -6.3748 0.0847 43 1 -0.0105 -6.4519 1.4925 44 1 0.9063 -8.6030 0.6661 45 1 -0.8556 -8.7055 0.8958 46 1 -0.1783 -9.7207 -1.2633 47 1 -1.1953 -8.2831 -1.5244 48 1 1.8545 -8.3498 -1.6316 49 1 0.7675 -8.2717 -3.0393 50 1 1.6138 -6.0193 -2.4420 51 1 -0.1484 -6.1221 -2.2129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733106865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:34 Heat of formation + Delta-G solvation = 8.600560 kcal Electronic energy + Delta-G solvation = -28151.777550 eV Core-core repulsion = 24279.248521 eV Total energy + Delta-G solvation = -3872.529029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.82425 -40.72150 -39.30642 -37.55213 -36.43416 -34.25222 -33.55657 -32.94345 -31.67094 -31.47814 -29.76663 -27.92681 -27.23716 -25.35114 -24.21836 -23.62764 -23.30619 -22.38886 -22.07724 -20.78345 -19.84489 -19.15274 -18.91300 -17.77635 -17.26649 -16.99833 -16.52227 -16.17155 -15.93464 -15.88104 -15.27502 -15.23952 -15.17909 -15.02728 -14.99222 -14.62030 -14.44322 -14.01846 -13.64011 -13.47417 -13.36648 -13.25962 -13.09729 -13.06814 -12.76630 -12.72372 -12.44406 -12.26882 -12.09580 -12.03830 -11.83430 -11.81866 -11.64406 -11.36760 -11.22593 -11.15145 -11.04917 -10.93849 -10.45290 -9.95123 -9.69508 -9.03085 -7.96129 -5.26473 0.47029 1.06575 1.46420 1.51145 1.57105 1.74746 2.10675 2.30298 2.56201 3.23599 3.36959 3.46038 3.70107 3.84897 3.85469 3.91592 4.09882 4.19646 4.23710 4.26353 4.34238 4.40614 4.52299 4.52692 4.56056 4.57944 4.59488 4.61170 4.71775 4.72901 4.75694 4.78242 4.88460 5.01568 5.04250 5.14528 5.20076 5.23259 5.25123 5.28117 5.29429 5.31352 5.39942 5.43781 5.47521 5.54408 5.56963 6.05456 6.25534 6.31069 6.79366 7.08318 7.30889 8.06066 8.29963 9.27633 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.001806 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.713294 B =15501.744617 C =16269.634231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.601 5.601 3 C 0.126 3.874 4 C -0.121 4.121 5 C 0.155 3.845 6 N -0.749 5.749 7 C -0.251 4.251 8 H 0.079 0.921 9 C -0.080 4.080 10 N -0.972 5.972 11 Si 0.981 3.019 12 H -0.278 1.278 13 H -0.294 1.294 14 H -0.273 1.273 15 C 0.588 3.412 16 O -0.575 6.575 17 C -0.031 4.031 18 C -0.201 4.201 19 C 0.048 3.952 20 C -0.013 4.013 21 C -0.116 4.116 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.111 4.111 26 N -0.363 5.363 27 H 0.459 0.541 28 N -0.251 5.251 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.017 0.983 38 H 0.372 0.628 39 H 0.252 0.748 40 H 0.155 0.845 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.205 -29.893 14.846 37.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.332 5.332 3 C 0.003 3.997 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.383 4.383 8 H 0.097 0.903 9 C -0.272 4.272 10 N -0.623 5.623 11 Si 0.809 3.191 12 H -0.204 1.204 13 H -0.220 1.220 14 H -0.199 1.199 15 C 0.375 3.625 16 O -0.453 6.453 17 C -0.190 4.190 18 C -0.229 4.229 19 C -0.079 4.079 20 C -0.033 4.033 21 C -0.153 4.153 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.149 4.149 26 N -0.079 5.079 27 H 0.307 0.693 28 N -0.088 5.088 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.035 0.965 38 H 0.203 0.797 39 H 0.061 0.939 40 H 0.173 0.827 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.464 -29.084 15.061 36.657 hybrid contribution 0.982 0.255 -0.967 1.401 sum -15.482 -28.828 14.095 35.629 Atomic orbital electron populations 1.22279 0.76628 1.04454 1.03428 1.47824 1.08860 1.05047 1.71433 1.21418 0.98043 0.84455 0.95767 1.21865 1.00126 0.96337 0.97711 1.20701 0.96526 0.93860 0.86074 1.42602 1.68206 1.25468 1.02912 1.19678 1.27422 0.98888 0.92279 0.90343 1.25685 1.03233 1.02834 0.95400 1.69838 1.53225 1.40928 0.98294 0.85106 0.78534 0.79179 0.76297 1.20416 1.21983 1.19922 1.17453 0.85952 0.82985 0.76068 1.90771 1.14743 1.87384 1.52391 1.21672 0.90610 0.94754 1.11924 1.21625 1.00812 0.90347 1.10112 1.21567 0.85721 0.96136 1.04479 1.19919 1.02184 0.83910 0.97277 1.21629 0.97601 0.96393 0.99713 1.21501 1.02672 0.94493 0.96716 1.21566 0.98695 1.00564 0.94990 1.21523 0.99643 0.93917 1.00515 1.21584 1.02237 0.96919 0.94191 1.43482 1.10268 1.02912 1.51251 0.69309 1.73671 1.15117 1.00541 1.19515 0.91100 0.89917 0.88887 0.87099 0.90877 0.94443 0.91502 0.94604 0.96544 0.79706 0.93932 0.82741 0.88154 0.90906 0.91278 0.91647 0.90847 0.91424 0.91698 0.91592 0.91582 0.92457 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 9.63 127.77 1.23 2.76 16 2 N -0.60 -17.05 2.87 -850.33 -2.44 -19.49 16 3 C 0.13 3.75 5.41 86.38 0.47 4.21 16 4 C -0.12 -4.46 5.65 30.59 0.17 -4.29 16 5 C 0.16 6.73 6.26 86.38 0.54 7.27 16 6 N -0.75 -41.32 5.60 -343.44 -1.92 -43.25 16 7 C -0.25 -14.85 9.99 84.03 0.84 -14.02 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 10 N -0.97 -62.22 13.06 21.65 0.28 -61.94 16 11 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 14 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 15 C 0.59 19.37 7.68 86.75 0.67 20.04 16 16 O -0.57 -23.34 16.49 -3.93 -0.06 -23.41 16 17 C -0.03 -0.82 6.82 42.46 0.29 -0.53 16 18 C -0.20 -4.63 10.73 22.41 0.24 -4.39 16 19 C 0.05 0.72 5.92 41.40 0.24 0.97 16 20 C -0.01 -0.12 2.59 -11.54 -0.03 -0.15 16 21 C -0.12 -0.63 4.96 30.59 0.15 -0.47 16 22 C -0.12 -0.55 5.92 30.59 0.18 -0.37 16 23 C -0.12 -0.64 5.92 30.59 0.18 -0.46 16 24 C -0.12 -0.86 5.92 30.58 0.18 -0.68 16 25 C -0.11 -1.04 5.18 30.58 0.16 -0.88 16 26 N -0.36 -4.90 6.64 -47.93 -0.32 -5.22 16 27 H 0.46 2.69 8.15 -219.99 -1.79 0.90 16 28 N -0.25 -5.11 8.76 -48.17 -0.42 -5.53 16 29 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.08 1.51 8.03 -2.39 -0.02 1.49 16 31 H 0.09 1.94 5.35 -2.38 -0.01 1.93 16 32 H 0.11 2.60 8.07 -2.39 -0.02 2.58 16 33 H 0.07 2.40 7.37 -2.39 -0.02 2.38 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.37 21.83 7.67 -92.71 -0.71 21.12 16 39 H 0.25 15.54 8.31 -92.70 -0.77 14.77 16 40 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.21 7.44 -2.38 -0.02 0.20 16 43 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 46 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 48 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 50 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 51 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -78.46 406.80 1.54 -76.92 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -1.58 Total: 27.43 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 5.98 Total: 4.68 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -4.82 Total: -135.42 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.06 Total: -23.41 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -78.46 1.54 -76.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733106865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.520 kcal (2) G-P(sol) polarization free energy of solvation -78.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds