Wall clock time and date at job start Tue Mar 31 2020 18:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47341 * 2 1 4 4 C 1.53005 * 109.47074 * 120.00069 * 2 1 3 5 5 C 1.53002 * 109.46953 * 294.99865 * 4 2 1 6 6 C 1.52999 * 109.46899 * 294.99738 * 5 4 2 7 7 C 1.53002 * 109.46899 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47102 * 60.00098 * 7 6 5 9 9 C 1.53002 * 109.47215 * 300.00110 * 8 7 6 10 10 C 1.52998 * 109.46650 * 174.99898 * 5 4 2 11 11 C 1.50702 * 109.46834 * 239.99718 * 2 1 3 12 12 O 1.21279 * 119.99957 * 239.72269 * 11 2 1 13 13 N 1.34770 * 119.99830 * 60.00474 * 11 2 1 14 14 C 1.46499 * 120.00169 * 179.71972 * 13 11 2 15 15 C 1.53000 * 109.47441 * 179.97438 * 14 13 11 16 16 H 1.08992 * 115.51621 * 330.42215 * 15 14 13 17 17 C 1.52999 * 117.44269 * 184.99785 * 15 14 13 18 18 H 1.09002 * 119.54244 * 4.12726 * 17 15 14 19 19 C 1.54394 * 118.12011 * 160.81217 * 17 15 14 20 20 N 1.48141 * 104.61607 * 87.19416 * 19 17 15 21 21 C 1.36937 * 127.83763 * 140.39465 * 20 19 17 22 22 H 1.07998 * 120.00498 * 195.59143 * 21 20 19 23 23 C 1.38812 * 119.99907 * 15.59172 * 21 20 19 24 24 N 1.31620 * 120.00127 * 9.10346 * 23 21 20 25 25 Si 1.86804 * 119.99988 * 189.09797 * 23 21 20 26 26 H 1.48493 * 109.46923 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46830 * 120.00337 * 25 23 21 28 28 H 1.48499 * 109.47019 * 239.99988 * 25 23 21 29 29 C 1.48141 * 104.32468 * 320.41133 * 20 19 17 30 30 C 1.52997 * 117.44000 * 115.76095 * 15 14 13 31 31 H 1.09003 * 119.54395 * 355.88457 * 30 15 14 32 32 H 1.09006 * 109.47598 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47299 * 299.99738 * 1 2 3 34 34 H 1.09003 * 109.47466 * 59.99646 * 1 2 3 35 35 H 1.08996 * 109.46837 * 54.99799 * 4 2 1 36 36 H 1.08997 * 109.46811 * 174.99880 * 4 2 1 37 37 H 1.08999 * 109.47169 * 55.00298 * 5 4 2 38 38 H 1.08992 * 109.47267 * 300.00260 * 6 5 4 39 39 H 1.09001 * 109.46918 * 60.00349 * 6 5 4 40 40 H 1.08999 * 109.47169 * 300.00559 * 7 6 5 41 41 H 1.09000 * 109.47040 * 180.02562 * 7 6 5 42 42 H 1.08992 * 109.47062 * 179.97438 * 8 7 6 43 43 H 1.09006 * 109.46733 * 59.99803 * 8 7 6 44 44 H 1.09001 * 109.47216 * 300.00234 * 9 8 7 45 45 H 1.09001 * 109.46969 * 179.97438 * 9 8 7 46 46 H 1.09000 * 109.47415 * 299.99790 * 10 5 4 47 47 H 1.09001 * 109.47496 * 60.00450 * 10 5 4 48 48 H 0.97002 * 120.00118 * 359.72489 * 13 11 2 49 49 H 1.08998 * 109.47210 * 300.00496 * 14 13 11 50 50 H 1.09003 * 109.47251 * 59.99919 * 14 13 11 51 51 H 1.08996 * 110.40791 * 205.97997 * 19 17 15 52 52 H 1.09000 * 110.40692 * 328.40785 * 19 17 15 53 53 H 0.96999 * 120.00159 * 180.02562 * 24 23 21 54 54 H 1.09001 * 110.41495 * 280.80261 * 29 20 19 55 55 H 1.09000 * 110.50510 * 158.42249 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 0.0689 2.4953 6 6 2.3449 1.4243 2.4925 7 6 1.9397 2.2148 3.7382 8 6 2.3392 1.4325 4.9910 9 6 1.6296 0.0771 4.9938 10 6 2.0353 -0.7137 3.7477 11 6 2.0322 -0.7105 -1.2305 12 8 2.7336 -1.6936 -1.1192 13 7 1.7067 -0.2500 -2.4545 14 6 2.1999 -0.9370 -3.6507 15 6 1.6884 -0.2169 -4.8999 16 1 0.7296 0.2897 -4.7903 17 6 1.9994 -0.8518 -6.2568 18 1 2.5066 -1.8158 -6.2955 19 6 1.1456 -0.4278 -7.4714 20 7 1.8273 0.7738 -8.0063 21 6 2.0217 1.1152 -9.3181 22 1 2.7425 1.8767 -9.5768 23 6 1.2921 0.4826 -10.3153 24 7 0.2921 -0.3114 -9.9962 25 14 1.7297 0.7583 -12.1103 26 1 2.8849 1.6869 -12.2012 27 1 2.0876 -0.5393 -12.7375 28 1 0.5646 1.3460 -12.8192 29 6 2.2513 1.5221 -6.8001 30 6 2.7283 0.4339 -5.8142 31 1 3.7787 0.4277 -5.5231 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.6053 -1.7198 1.2951 36 1 3.1262 -0.7995 1.2056 37 1 0.5562 0.2236 2.4929 38 1 3.4238 1.2696 2.4949 39 1 2.0599 1.9818 1.6002 40 1 0.8607 2.3695 3.7353 41 1 2.4449 3.1806 3.7359 42 1 2.0509 1.9959 5.8784 43 1 3.4182 1.2778 4.9939 44 1 0.5506 0.2318 4.9908 45 1 1.9146 -0.4804 5.8861 46 1 1.5297 -1.6793 3.7497 47 1 3.1143 -0.8684 3.7502 48 1 1.1458 0.5364 -2.5435 49 1 3.2899 -0.9324 -3.6489 50 1 1.8411 -1.9663 -3.6525 51 1 1.1293 -1.2202 -8.2196 52 1 0.1319 -0.1810 -7.1558 53 1 -0.2174 -0.7537 -10.6930 54 1 1.4103 2.0735 -6.3796 55 1 3.0686 2.2020 -7.0402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734168315.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:51 Heat of formation + Delta-G solvation = -38.813281 kcal Electronic energy + Delta-G solvation = -28588.317413 eV Core-core repulsion = 24817.272709 eV Total energy + Delta-G solvation = -3771.044704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 334.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.19349 -40.36840 -39.47104 -36.37418 -35.73636 -34.96722 -32.76659 -31.75559 -31.41528 -28.97217 -28.76802 -27.18960 -26.72409 -24.47708 -23.42192 -22.84112 -21.99916 -21.55327 -20.86946 -20.59416 -20.21975 -18.84595 -18.09343 -17.21358 -16.74826 -16.56476 -16.26708 -15.89059 -15.74769 -15.20855 -15.16142 -14.85695 -14.78900 -14.67181 -14.58952 -14.24864 -14.08045 -13.82848 -13.37058 -13.19550 -13.17057 -13.02325 -12.89672 -12.75969 -12.74592 -12.64662 -12.31091 -12.10004 -11.98786 -11.94699 -11.92433 -11.88875 -11.77373 -11.56898 -11.23639 -11.01287 -10.89048 -10.78533 -10.73899 -10.69507 -10.48212 -10.01937 -8.91232 -7.92653 -5.28793 1.45855 1.46872 1.57644 1.67637 2.15288 2.46913 2.73713 3.25704 3.60423 3.67493 3.71405 3.71789 3.84339 3.84814 3.98809 4.10231 4.13639 4.21218 4.26999 4.38072 4.39573 4.41815 4.52352 4.56327 4.59995 4.67251 4.68145 4.70617 4.71430 4.73769 4.82150 4.91779 4.93672 4.98526 5.02003 5.04520 5.14469 5.20691 5.22019 5.25962 5.32638 5.33039 5.34054 5.39659 5.44497 5.45122 5.47128 5.50313 5.52577 5.56982 5.65880 5.70360 6.17497 6.59103 7.00620 7.28165 7.67796 8.46000 9.21301 Molecular weight = 334.24amu Principal moments of inertia in cm(-1) A = 0.034612 B = 0.001639 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.769674 B =17083.428125 C =17355.899513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 H 0.119 0.881 4 C -0.090 4.090 5 C -0.080 4.080 6 C -0.117 4.117 7 C -0.118 4.118 8 C -0.121 4.121 9 C -0.117 4.117 10 C -0.116 4.116 11 C 0.511 3.489 12 O -0.589 6.589 13 N -0.715 5.715 14 C 0.163 3.837 15 C -0.107 4.107 16 H 0.111 0.889 17 C -0.178 4.178 18 H 0.111 0.889 19 C 0.190 3.810 20 N -0.621 5.621 21 C -0.240 4.240 22 H 0.081 0.919 23 C -0.063 4.063 24 N -0.947 5.947 25 Si 0.979 3.021 26 H -0.265 1.265 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.149 3.851 30 C -0.160 4.160 31 H 0.122 0.878 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.053 0.947 48 H 0.415 0.585 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.052 0.948 52 H 0.003 0.997 53 H 0.250 0.750 54 H 0.029 0.971 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 4.056 31.037 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.137 0.863 4 C -0.128 4.128 5 C -0.099 4.099 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.159 4.159 9 C -0.155 4.155 10 C -0.154 4.154 11 C 0.299 3.701 12 O -0.469 6.469 13 N -0.367 5.367 14 C 0.039 3.961 15 C -0.126 4.126 16 H 0.129 0.871 17 C -0.199 4.199 18 H 0.129 0.871 19 C 0.064 3.936 20 N -0.345 5.345 21 C -0.369 4.369 22 H 0.098 0.902 23 C -0.256 4.256 24 N -0.595 5.595 25 Si 0.807 3.193 26 H -0.189 1.189 27 H -0.219 1.219 28 H -0.217 1.217 29 C 0.024 3.976 30 C -0.180 4.180 31 H 0.140 0.860 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.252 0.748 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.021 0.979 53 H 0.059 0.941 54 H 0.047 0.953 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.308 3.354 30.833 31.043 hybrid contribution -0.066 -0.017 -1.503 1.505 sum 1.242 3.337 29.330 29.545 Atomic orbital electron populations 1.21855 0.91407 1.02660 1.04178 1.21392 0.98689 1.01332 0.90987 0.86349 1.21376 1.00452 0.98439 0.92556 1.21182 1.00964 0.94719 0.92995 1.21662 0.99897 0.95467 0.98451 1.21529 1.01541 0.98299 0.94208 1.21553 1.00095 0.96111 0.98130 1.21527 1.00593 0.95967 0.97368 1.21588 1.00836 0.98478 0.94466 1.21362 0.79152 0.84009 0.85579 1.90679 1.39985 1.28749 1.87525 1.45959 1.53263 1.32574 1.04892 1.20627 0.98414 0.95278 0.81824 1.22404 0.99423 1.01401 0.89340 0.87119 1.23924 1.04490 0.97484 0.93975 0.87142 1.20787 0.91452 0.89896 0.91459 1.45532 1.66567 1.21429 1.00991 1.19425 1.16374 1.19339 0.81781 0.90154 1.25734 0.96792 1.00741 1.02380 1.70096 1.21781 1.35242 1.32411 0.85007 0.77547 0.77241 0.79485 1.18879 1.21862 1.21746 1.21288 0.97051 0.92894 0.86352 1.23921 0.97907 0.95238 1.00912 0.86008 0.93098 0.89313 0.91027 0.92731 0.93055 0.89777 0.92886 0.91037 0.91475 0.91845 0.91647 0.92666 0.91592 0.91990 0.92233 0.92866 0.74793 0.91817 0.91767 0.92997 0.97862 0.94129 0.95281 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.85 71.98 0.64 -0.94 16 2 C -0.10 -1.50 2.59 -11.54 -0.03 -1.53 16 3 H 0.12 1.30 6.34 -2.39 -0.02 1.28 16 4 C -0.09 -1.46 3.50 30.60 0.11 -1.35 16 5 C -0.08 -0.92 2.05 -10.79 -0.02 -0.94 16 6 C -0.12 -1.24 4.96 30.59 0.15 -1.09 16 7 C -0.12 -1.09 5.92 30.60 0.18 -0.91 16 8 C -0.12 -1.17 5.92 30.60 0.18 -0.99 16 9 C -0.12 -1.16 5.93 30.62 0.18 -0.98 16 10 C -0.12 -1.40 5.21 30.61 0.16 -1.24 16 11 C 0.51 11.57 7.15 87.66 0.63 12.20 16 12 O -0.59 -18.74 15.92 -3.03 -0.05 -18.79 16 13 N -0.71 -14.51 5.45 -463.07 -2.52 -17.03 16 14 C 0.16 4.07 5.95 86.38 0.51 4.58 16 15 C -0.11 -3.00 5.39 -10.79 -0.06 -3.06 16 16 H 0.11 3.01 8.04 -2.39 -0.02 2.99 16 17 C -0.18 -6.59 6.85 -9.89 -0.07 -6.66 16 18 H 0.11 3.91 8.14 -2.39 -0.02 3.90 16 19 C 0.19 9.27 5.70 86.54 0.49 9.76 16 20 N -0.62 -31.96 3.38 -688.16 -2.33 -34.29 16 21 C -0.24 -13.50 10.35 84.03 0.87 -12.63 16 22 H 0.08 4.32 7.84 -2.91 -0.02 4.29 16 23 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 24 N -0.95 -56.99 10.87 21.65 0.24 -56.75 16 25 Si 0.98 45.51 29.56 68.60 2.03 47.54 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 28 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 29 C 0.15 5.99 7.04 86.54 0.61 6.60 16 30 C -0.16 -5.28 6.74 -9.89 -0.07 -5.34 16 31 H 0.12 3.60 8.12 -2.39 -0.02 3.58 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.09 0.67 6.46 -2.38 -0.02 0.65 16 34 H 0.07 0.66 7.56 -2.39 -0.02 0.64 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.03 7.95 -2.39 -0.02 1.01 16 37 H 0.08 0.82 6.34 -2.39 -0.02 0.80 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.65 6.46 -2.39 -0.02 0.64 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.41 6.18 7.81 -92.71 -0.72 5.45 16 49 H 0.06 1.69 7.94 -2.39 -0.02 1.67 16 50 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.05 2.91 6.51 -2.39 -0.02 2.89 16 52 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 53 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 54 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 55 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -70.01 417.99 2.41 -67.59 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.12 Total: 19.37 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.93 Total: -7.64 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -4.61 Total: -108.07 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -70.01 2.41 -67.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734168315.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.781 kcal (2) G-P(sol) polarization free energy of solvation -70.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds