Wall clock time and date at job start Tue Mar 31 2020 18:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47308 * 14.24213 * 3 2 1 5 5 N 1.46895 * 109.47105 * 179.37869 * 4 3 2 6 6 C 1.46899 * 111.00295 * 288.04971 * 5 4 3 7 7 C 1.50697 * 109.47388 * 160.33671 * 6 5 4 8 8 H 1.08002 * 120.00088 * 4.69654 * 7 6 5 9 9 C 1.37879 * 120.00241 * 184.70066 * 7 6 5 10 10 N 1.31517 * 119.99533 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00224 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46978 * 90.00219 * 11 9 7 13 13 H 1.48500 * 109.46926 * 209.99923 * 11 9 7 14 14 H 1.48497 * 109.46744 * 329.99913 * 11 9 7 15 15 C 1.46902 * 111.00163 * 164.09611 * 5 4 3 16 16 N 1.46500 * 109.47237 * 278.95518 * 15 5 4 17 17 C 1.39515 * 126.26115 * 89.99536 * 16 15 5 18 18 C 1.38614 * 133.34219 * 359.97438 * 17 16 15 19 19 C 1.38126 * 119.83465 * 180.02562 * 18 17 16 20 20 C 1.38508 * 120.17712 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 119.85840 * 180.02562 * 20 19 18 22 22 C 1.38219 * 120.28237 * 0.02562 * 20 19 18 23 23 C 1.38608 * 119.90829 * 359.97438 * 22 20 19 24 24 O 1.35568 * 132.98072 * 179.69321 * 23 22 20 25 25 C 1.34224 * 109.18519 * 179.97438 * 24 23 22 26 26 O 1.21607 * 125.27232 * 180.12114 * 25 24 23 27 27 H 1.08997 * 109.47273 * 254.24180 * 3 2 1 28 28 H 1.08996 * 109.46718 * 134.24454 * 3 2 1 29 29 H 1.09004 * 109.46990 * 59.37890 * 4 3 2 30 30 H 1.09002 * 109.47571 * 299.38054 * 4 3 2 31 31 H 1.09002 * 109.47067 * 280.33600 * 6 5 4 32 32 H 1.08996 * 109.47380 * 40.33342 * 6 5 4 33 33 H 0.97008 * 119.99536 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47698 * 158.95229 * 15 5 4 35 35 H 1.08999 * 109.46793 * 38.95485 * 15 5 4 36 36 H 1.07991 * 120.08625 * 0.04533 * 18 17 16 37 37 H 1.08010 * 119.91075 * 180.02562 * 19 18 17 38 38 H 1.08007 * 120.04855 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3972 -0.3549 5 7 4.5875 -1.3929 -0.3694 6 6 5.1003 -0.6629 -1.5365 7 6 6.5307 -0.2592 -1.2878 8 1 7.0350 -0.5834 -0.3895 9 6 7.1958 0.5243 -2.2070 10 7 6.5818 0.9188 -3.3012 11 14 8.9687 1.0254 -1.8984 12 1 9.8793 0.0064 -2.4794 13 1 9.2289 2.3418 -2.5344 14 1 9.2071 1.1262 -0.4362 15 6 5.1185 -2.7620 -0.3299 16 7 5.1080 -3.2502 1.0513 17 6 4.0642 -3.9320 1.6775 18 6 2.8081 -4.3413 1.2580 19 6 1.9773 -5.0149 2.1319 20 6 2.3966 -5.2824 3.4247 21 17 1.3460 -6.1303 4.5160 22 6 3.6479 -4.8771 3.8495 23 6 4.4878 -4.2006 2.9788 24 8 5.7359 -3.6878 3.1098 25 6 6.1045 -3.1225 1.9496 26 8 7.1711 -2.5765 1.7421 27 1 2.9712 0.2799 0.9890 28 1 2.9709 0.7178 -0.7362 29 1 2.7464 -1.6810 -1.3393 30 1 2.7648 -2.1127 0.3874 31 1 5.0516 -1.3043 -2.4165 32 1 4.4949 0.2282 -1.7025 33 1 7.0498 1.4698 -3.9481 34 1 6.1404 -2.7666 -0.7091 35 1 4.4984 -3.4101 -0.9492 36 1 2.4798 -4.1342 0.2502 37 1 0.9984 -5.3347 1.8062 38 1 3.9712 -5.0881 4.8582 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016834897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:37 Heat of formation + Delta-G solvation = 3.037271 kcal Electronic energy + Delta-G solvation = -26228.581827 eV Core-core repulsion = 22291.302775 eV Total energy + Delta-G solvation = -3937.279053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.35871 -39.81627 -39.44630 -38.44660 -37.66322 -37.25530 -36.17367 -34.65263 -32.44771 -31.84167 -30.39708 -29.22674 -27.13953 -25.01901 -24.58902 -23.84182 -23.25304 -21.59820 -19.82545 -19.12229 -18.76058 -18.36557 -18.24364 -17.71112 -16.92163 -16.42211 -16.31243 -16.10819 -15.87305 -15.57115 -15.40935 -15.21435 -14.77586 -14.48520 -14.32101 -14.01870 -13.84709 -13.73280 -13.51796 -13.44144 -13.07292 -12.93199 -12.74885 -12.62891 -12.53608 -12.45845 -12.15758 -12.01962 -11.95798 -11.72098 -11.36736 -11.24941 -10.54618 -9.98227 -9.28658 -9.11982 -8.16046 -6.20876 -0.16710 -0.05000 0.79170 1.05993 1.38545 1.41452 1.44687 1.56054 1.73984 1.81532 1.92104 2.32067 2.44410 2.82486 3.17708 3.19189 3.48329 3.49455 3.80942 3.90428 4.00592 4.07462 4.14365 4.29956 4.45892 4.51195 4.57615 4.70454 4.86327 4.93990 5.01111 5.03662 5.13430 5.20234 5.27201 5.35039 5.74349 6.03929 6.11147 6.14606 6.50145 6.57459 6.59444 6.95197 7.48286 8.92869 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.003719 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.951432 B = 7527.754689 C = 9245.222776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.243 3.757 3 C -0.019 4.019 4 C 0.057 3.943 5 N -0.558 5.558 6 C 0.212 3.788 7 C -0.517 4.517 8 H 0.050 0.950 9 C 0.019 3.981 10 N -0.923 5.923 11 Si 0.943 3.057 12 H -0.278 1.278 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.304 3.696 16 N -0.526 5.526 17 C 0.076 3.924 18 C -0.088 4.088 19 C -0.072 4.072 20 C -0.032 4.032 21 Cl -0.044 7.044 22 C -0.066 4.066 23 C 0.022 3.978 24 O -0.248 6.248 25 C 0.634 3.366 26 O -0.516 6.516 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.055 0.945 30 H 0.090 0.910 31 H -0.012 1.012 32 H 0.039 0.961 33 H 0.263 0.737 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.165 0.835 37 H 0.177 0.823 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.772 -14.885 10.849 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.074 4.074 3 C -0.059 4.059 4 C -0.072 4.072 5 N -0.284 5.284 6 C 0.087 3.913 7 C -0.555 4.555 8 H 0.069 0.931 9 C -0.180 4.180 10 N -0.564 5.564 11 Si 0.770 3.230 12 H -0.204 1.204 13 H -0.207 1.207 14 H -0.205 1.205 15 C 0.095 3.905 16 N -0.258 5.258 17 C -0.023 4.023 18 C -0.109 4.109 19 C -0.091 4.091 20 C -0.060 4.060 21 Cl -0.015 7.015 22 C -0.085 4.085 23 C -0.024 4.024 24 O -0.154 6.154 25 C 0.389 3.611 26 O -0.400 6.400 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.006 0.994 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.183 0.817 37 H 0.194 0.806 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.559 -14.245 11.197 22.046 hybrid contribution 1.676 0.377 -0.637 1.832 sum -10.883 -13.867 10.560 20.549 Atomic orbital electron populations 1.81210 1.13974 1.10069 1.11011 1.29254 0.95031 0.91753 0.91341 1.19266 0.79692 1.00137 1.06817 1.22150 0.87409 0.96036 1.01615 1.61472 1.06937 1.14323 1.45716 1.19465 0.94407 0.92714 0.84745 1.21438 0.98181 1.30919 1.05007 0.93138 1.25488 1.01184 0.96255 0.95078 1.69995 1.38178 1.37517 1.10676 0.85775 0.81602 0.77657 0.77919 1.20416 1.20656 1.20494 1.21979 1.03125 0.89046 0.76323 1.46247 1.13564 1.51768 1.14199 1.18955 0.92600 0.98836 0.91897 1.20348 0.88898 0.99362 1.02265 1.21208 1.01182 0.96448 0.90279 1.20394 0.91670 1.01231 0.92701 1.98404 1.64525 1.75465 1.63095 1.19845 0.90780 0.97679 1.00234 1.18963 0.84629 1.03834 0.95013 1.84958 1.30642 1.64710 1.35054 1.18642 0.84864 0.79181 0.78456 1.91180 1.23957 1.46887 1.78011 0.86002 0.87023 0.92662 0.89190 0.99440 0.94274 0.92773 0.89000 0.87823 0.81719 0.80556 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.10 18.54 20.01 0.37 -13.73 16 2 C 0.24 6.02 15.43 89.44 1.38 7.40 16 3 C -0.02 -0.44 5.77 28.79 0.17 -0.27 16 4 C 0.06 1.36 4.77 86.30 0.41 1.78 16 5 N -0.56 -18.55 4.48 -913.18 -4.09 -22.64 16 6 C 0.21 9.07 4.54 85.56 0.39 9.46 16 7 C -0.52 -26.75 8.52 25.60 0.22 -26.53 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.02 1.01 5.46 84.65 0.46 1.48 16 10 N -0.92 -50.73 13.29 21.45 0.28 -50.44 16 11 Si 0.94 43.95 29.54 68.60 2.03 45.98 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 15 C 0.30 9.24 5.61 170.81 0.96 10.20 16 16 N -0.53 -15.33 3.00 -771.41 -2.32 -17.65 16 17 C 0.08 1.67 6.18 38.30 0.24 1.91 16 18 C -0.09 -1.28 8.60 22.33 0.19 -1.09 16 19 C -0.07 -0.83 9.82 22.31 0.22 -0.61 16 20 C -0.03 -0.44 6.32 22.33 0.14 -0.30 16 21 Cl -0.04 -0.55 28.95 -2.72 -0.08 -0.63 16 22 C -0.07 -1.11 9.84 22.35 0.22 -0.89 16 23 C 0.02 0.52 7.35 22.65 0.17 0.68 16 24 O -0.25 -7.59 10.72 8.47 0.09 -7.50 16 25 C 0.63 22.68 9.07 129.79 1.18 23.86 16 26 O -0.52 -23.26 17.81 19.17 0.34 -22.92 16 27 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.11 2.91 6.52 -2.39 -0.02 2.89 16 29 H 0.06 1.23 8.05 -2.38 -0.02 1.21 16 30 H 0.09 1.79 4.83 -2.39 -0.01 1.78 16 31 H -0.01 -0.54 8.00 -2.39 -0.02 -0.56 16 32 H 0.04 1.74 6.24 -2.39 -0.01 1.72 16 33 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 34 H 0.09 3.43 7.17 -2.39 -0.02 3.41 16 35 H 0.10 2.33 7.92 -2.39 -0.02 2.31 16 36 H 0.17 1.71 7.44 -2.92 -0.02 1.69 16 37 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -66.98 351.46 4.09 -62.89 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 1.12 Total: -0.43 kcal Atomic # 6 Polarization: 20.72 SS G_CDS: 6.34 Total: 27.06 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -5.75 Total: -104.46 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: 0.43 Total: -30.41 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -66.98 4.09 -62.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016834897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.930 kcal (2) G-P(sol) polarization free energy of solvation -66.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds