Wall clock time and date at job start Tue Mar 31 2020 19:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48493 * 109.47141 * 239.99846 * 3 2 1 5 5 H 1.48497 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46882 * 119.99629 * 3 2 1 7 7 C 1.38817 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99282 * 154.72450 * 7 2 1 9 9 N 1.36932 * 120.00206 * 334.72956 * 7 2 1 10 10 C 1.46504 * 120.00093 * 129.71811 * 9 7 2 11 11 C 1.53002 * 117.49621 * 3.86927 * 10 9 7 12 12 C 1.53000 * 117.49774 * 295.21139 * 10 9 7 13 13 S 1.65596 * 119.99928 * 309.71851 * 9 7 2 14 14 O 1.42099 * 106.40090 * 156.46075 * 13 9 7 15 15 O 1.42093 * 106.40312 * 23.54114 * 13 9 7 16 16 C 1.76199 * 107.21818 * 269.99822 * 13 9 7 17 17 C 1.38284 * 119.93436 * 90.00073 * 16 13 9 18 18 C 1.38122 * 120.06407 * 179.72465 * 17 16 13 19 19 C 1.38820 * 119.93561 * 0.25478 * 18 17 16 20 20 N 1.40262 * 120.06432 * 180.02562 * 19 18 17 21 21 C 1.35059 * 127.38786 * 179.70592 * 20 19 18 22 22 N 1.30747 * 107.27388 * 179.84333 * 21 20 19 23 23 N 1.28415 * 110.64342 * 0.44797 * 22 21 20 24 24 N 1.28948 * 110.20627 * 359.71681 * 23 22 21 25 25 C 1.38814 * 119.87184 * 0.02562 * 19 18 17 26 26 C 1.38124 * 119.93390 * 359.97438 * 25 19 18 27 27 H 0.96996 * 120.00307 * 355.08668 * 1 2 3 28 28 H 1.08997 * 115.55214 * 149.53474 * 10 9 7 29 29 H 1.09003 * 117.49861 * 359.97438 * 11 10 9 30 30 H 1.09004 * 117.50133 * 145.02395 * 11 10 9 31 31 H 1.09007 * 117.49768 * 214.97798 * 12 10 9 32 32 H 1.09004 * 117.49878 * 359.97190 * 12 10 9 33 33 H 1.07994 * 119.96366 * 359.97438 * 17 16 13 34 34 H 1.07998 * 120.03009 * 180.23323 * 18 17 16 35 35 H 1.08001 * 126.36428 * 0.02562 * 21 20 19 36 36 H 1.08002 * 120.03742 * 179.97438 * 25 19 18 37 37 H 1.08003 * 119.96956 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0127 -1.2471 -0.3988 9 7 1.4238 -2.3311 0.5073 10 6 1.4179 -3.5686 -0.2770 11 6 2.1611 -3.5609 -1.6143 12 6 0.6306 -3.5697 -1.5889 13 16 0.7214 -2.2976 2.0065 14 8 -0.2346 -3.3487 2.0253 15 8 0.3892 -0.9402 2.2637 16 6 1.9653 -2.7355 3.1751 17 6 2.7515 -1.7522 3.7471 18 6 3.7236 -2.0919 4.6678 19 6 3.9144 -3.4224 5.0147 20 7 4.9003 -3.7703 5.9497 21 6 5.2069 -5.0075 6.3963 22 7 6.1852 -4.8793 7.2541 23 7 6.5117 -3.6445 7.3872 24 7 5.7772 -2.9052 6.6277 25 6 3.1275 -4.4079 4.4345 26 6 2.1570 -4.0622 3.5145 27 1 -0.4850 0.8369 0.0719 28 1 1.4329 -4.4921 0.3018 29 1 2.6541 -2.6351 -1.9108 30 1 2.6647 -4.4796 -1.9156 31 1 0.1279 -4.4942 -1.8733 32 1 0.1167 -2.6499 -1.8683 33 1 2.6027 -0.7173 3.4767 34 1 4.3348 -1.3231 5.1170 35 1 4.7340 -5.9315 6.0979 36 1 3.2740 -5.4439 4.7022 37 1 1.5448 -4.8285 3.0624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051155895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:13 Heat of formation + Delta-G solvation = 123.406131 kcal Electronic energy + Delta-G solvation = -26536.564562 eV Core-core repulsion = 22638.841552 eV Total energy + Delta-G solvation = -3897.723010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.40468 -39.37842 -37.24773 -35.85563 -35.22498 -34.31564 -33.41358 -32.58505 -31.10092 -30.84850 -30.17096 -25.33950 -25.11269 -24.09017 -22.28035 -21.81344 -21.63671 -20.71069 -19.02086 -18.82152 -17.76630 -16.81188 -16.40683 -16.26598 -16.14492 -15.45556 -15.23584 -14.51278 -14.34845 -14.02871 -13.76120 -13.52051 -13.43723 -13.36433 -13.21121 -12.48397 -12.41269 -12.03468 -11.68301 -11.52774 -11.31330 -11.26430 -11.08539 -10.85424 -10.73811 -10.69106 -10.60809 -10.51397 -10.40677 -10.07568 -9.93672 -9.53228 -9.13199 -8.92569 -8.82725 -7.68353 -6.70416 -4.37308 0.07097 1.23909 1.36068 1.52983 1.74016 2.02819 3.12547 3.18953 3.19568 3.46257 3.80033 4.00252 4.03450 4.39046 4.57679 4.64485 4.65589 4.73823 4.77474 5.10189 5.14959 5.28821 5.37851 5.42408 5.61824 5.67838 5.73655 5.82107 5.85140 5.99972 6.04066 6.17157 6.29288 6.33225 6.47133 6.74226 6.77352 7.01790 7.21944 7.38041 8.02915 8.15102 8.69122 9.11479 10.32949 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.003976 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.880992 B = 7041.304628 C = 7802.439675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.064 3.936 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.276 4.276 8 H 0.086 0.914 9 N -0.784 5.784 10 C 0.097 3.903 11 C -0.182 4.182 12 C -0.185 4.185 13 S 2.551 3.449 14 O -1.004 7.004 15 O -0.943 6.943 16 C -0.647 4.647 17 C -0.001 4.001 18 C -0.124 4.124 19 C 0.146 3.854 20 N -0.321 5.321 21 C 0.225 3.775 22 N -0.334 5.334 23 N -0.040 5.040 24 N -0.075 5.075 25 C -0.146 4.146 26 C -0.014 4.014 27 H 0.283 0.717 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.239 0.761 36 H 0.134 0.866 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 -7.431 2.507 9.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.156 4.156 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.424 4.424 8 H 0.104 0.896 9 N -0.606 5.606 10 C -0.011 4.011 11 C -0.221 4.221 12 C -0.226 4.226 13 S 2.649 3.351 14 O -0.993 6.993 15 O -0.931 6.931 16 C -0.722 4.722 17 C -0.021 4.021 18 C -0.145 4.145 19 C 0.054 3.946 20 N -0.111 5.111 21 C -0.072 4.072 22 N -0.183 5.183 23 N -0.035 5.035 24 N -0.060 5.060 25 C -0.167 4.167 26 C -0.034 4.034 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.255 0.745 36 H 0.152 0.848 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.049 -6.599 3.801 9.138 hybrid contribution 0.275 0.140 -0.072 0.317 sum 5.324 -6.460 3.730 9.164 Atomic orbital electron populations 1.69883 1.07179 1.30499 1.32766 1.25719 0.94912 1.00853 0.94135 0.86139 0.79576 0.80763 0.79235 1.19607 1.20477 1.19128 1.19060 0.98683 0.85977 1.38713 0.89626 1.52424 1.73016 1.12599 1.22541 1.21202 1.04724 0.88070 0.87137 1.23179 0.95027 1.02600 1.01275 1.23225 0.93792 1.02746 1.02792 1.11178 0.77318 0.73536 0.73057 1.93330 1.60565 1.58552 1.86875 1.93425 1.81719 1.33672 1.84310 1.33073 1.21879 0.99580 1.17699 1.20960 0.90092 1.00307 0.90703 1.21105 1.00081 0.93669 0.99633 1.17720 0.89662 0.95653 0.91602 1.49174 1.25733 1.06319 1.29871 1.27440 0.94879 0.91660 0.93219 1.74471 1.13715 1.11680 1.18421 1.78063 1.15917 0.96595 1.12920 1.82692 1.01443 1.14920 1.06945 1.20898 0.97718 0.97936 1.00168 1.20800 0.93860 0.95590 0.93154 0.90578 0.87546 0.87588 0.90096 0.89940 0.87821 0.83078 0.84069 0.74467 0.84786 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.41 11.76 55.49 0.65 -18.75 16 2 C 0.06 1.48 3.98 -17.43 -0.07 1.41 16 3 Si 0.92 18.40 29.63 -169.99 -5.04 13.36 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.28 -6.14 7.92 -15.06 -0.12 -6.26 16 8 H 0.09 1.79 7.31 -52.48 -0.38 1.40 16 9 N -0.78 -16.86 3.03 -53.42 -0.16 -17.02 16 10 C 0.10 1.81 6.02 -67.93 -0.41 1.40 16 11 C -0.18 -2.94 9.82 -26.69 -0.26 -3.20 16 12 C -0.19 -3.29 10.35 -26.69 -0.28 -3.57 16 13 S 2.55 56.71 5.45 -107.50 -0.59 56.13 16 14 O -1.00 -23.92 16.50 -57.17 -0.94 -24.86 16 15 O -0.94 -23.74 13.49 -57.17 -0.77 -24.51 16 16 C -0.65 -11.70 5.97 -39.55 -0.24 -11.94 16 17 C 0.00 -0.02 9.51 -39.61 -0.38 -0.40 16 18 C -0.12 -1.86 9.70 -39.41 -0.38 -2.24 16 19 C 0.15 1.99 6.70 -83.57 -0.56 1.43 16 20 N -0.32 -4.19 3.85 -11.74 -0.05 -4.23 16 21 C 0.22 2.34 12.16 -90.15 -1.10 1.24 16 22 N -0.33 -4.42 12.15 29.64 0.36 -4.06 16 23 N -0.04 -0.60 13.39 60.35 0.81 0.20 16 24 N -0.07 -1.12 13.34 60.35 0.80 -0.32 16 25 C -0.15 -1.77 9.49 -39.41 -0.37 -2.15 16 26 C -0.01 -0.22 9.51 -39.61 -0.38 -0.59 16 27 H 0.28 6.86 8.32 -40.82 -0.34 6.52 16 28 H 0.11 1.75 8.09 -51.93 -0.42 1.33 16 29 H 0.11 1.82 6.70 -51.93 -0.35 1.47 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 33 H 0.15 2.61 7.61 -52.49 -0.40 2.21 16 34 H 0.14 1.94 7.77 -52.49 -0.41 1.54 16 35 H 0.24 1.15 7.19 -52.49 -0.38 0.77 16 36 H 0.13 1.03 6.88 -52.49 -0.36 0.67 16 37 H 0.15 1.98 7.62 -52.48 -0.40 1.58 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -30.24 336.99 -7.88 -38.12 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -3.50 Total: 5.73 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -4.54 Total: -24.86 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 2.42 Total: -44.18 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -1.71 Total: -49.37 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.04 Total: 13.36 kcal Atomic # 16 Polarization: 56.71 SS G_CDS: -0.59 Total: 56.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.24 -7.88 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051155895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.526 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds