Wall clock time and date at job start Tue Mar 31 2020 19:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48493 * 109.47141 * 239.99846 * 3 2 1 5 5 H 1.48497 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46882 * 119.99629 * 3 2 1 7 7 C 1.38817 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99282 * 154.72450 * 7 2 1 9 9 N 1.36932 * 120.00206 * 334.72956 * 7 2 1 10 10 C 1.46504 * 120.00093 * 129.71811 * 9 7 2 11 11 C 1.53002 * 117.49621 * 3.86927 * 10 9 7 12 12 C 1.53000 * 117.49774 * 295.21139 * 10 9 7 13 13 S 1.65596 * 119.99928 * 309.71851 * 9 7 2 14 14 O 1.42099 * 106.40090 * 156.46075 * 13 9 7 15 15 O 1.42093 * 106.40312 * 23.54114 * 13 9 7 16 16 C 1.76199 * 107.21818 * 269.99822 * 13 9 7 17 17 C 1.38284 * 119.93436 * 90.00073 * 16 13 9 18 18 C 1.38122 * 120.06407 * 179.72465 * 17 16 13 19 19 C 1.38820 * 119.93561 * 0.25478 * 18 17 16 20 20 N 1.40262 * 120.06432 * 180.02562 * 19 18 17 21 21 C 1.35059 * 127.38786 * 179.70592 * 20 19 18 22 22 N 1.30747 * 107.27388 * 179.84333 * 21 20 19 23 23 N 1.28415 * 110.64342 * 0.44797 * 22 21 20 24 24 N 1.28948 * 110.20627 * 359.71681 * 23 22 21 25 25 C 1.38814 * 119.87184 * 0.02562 * 19 18 17 26 26 C 1.38124 * 119.93390 * 359.97438 * 25 19 18 27 27 H 0.96996 * 120.00307 * 355.08668 * 1 2 3 28 28 H 1.08997 * 115.55214 * 149.53474 * 10 9 7 29 29 H 1.09003 * 117.49861 * 359.97438 * 11 10 9 30 30 H 1.09004 * 117.50133 * 145.02395 * 11 10 9 31 31 H 1.09007 * 117.49768 * 214.97798 * 12 10 9 32 32 H 1.09004 * 117.49878 * 359.97190 * 12 10 9 33 33 H 1.07994 * 119.96366 * 359.97438 * 17 16 13 34 34 H 1.07998 * 120.03009 * 180.23323 * 18 17 16 35 35 H 1.08001 * 126.36428 * 0.02562 * 21 20 19 36 36 H 1.08002 * 120.03742 * 179.97438 * 25 19 18 37 37 H 1.08003 * 119.96956 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0127 -1.2471 -0.3988 9 7 1.4238 -2.3311 0.5073 10 6 1.4179 -3.5686 -0.2770 11 6 2.1611 -3.5609 -1.6143 12 6 0.6306 -3.5697 -1.5889 13 16 0.7214 -2.2976 2.0065 14 8 -0.2346 -3.3487 2.0253 15 8 0.3892 -0.9402 2.2637 16 6 1.9653 -2.7355 3.1751 17 6 2.7515 -1.7522 3.7471 18 6 3.7236 -2.0919 4.6678 19 6 3.9144 -3.4224 5.0147 20 7 4.9003 -3.7703 5.9497 21 6 5.2069 -5.0075 6.3963 22 7 6.1852 -4.8793 7.2541 23 7 6.5117 -3.6445 7.3872 24 7 5.7772 -2.9052 6.6277 25 6 3.1275 -4.4079 4.4345 26 6 2.1570 -4.0622 3.5145 27 1 -0.4850 0.8369 0.0719 28 1 1.4329 -4.4921 0.3018 29 1 2.6541 -2.6351 -1.9108 30 1 2.6647 -4.4796 -1.9156 31 1 0.1279 -4.4942 -1.8733 32 1 0.1167 -2.6499 -1.8683 33 1 2.6027 -0.7173 3.4767 34 1 4.3348 -1.3231 5.1170 35 1 4.7340 -5.9315 6.0979 36 1 3.2740 -5.4439 4.7022 37 1 1.5448 -4.8285 3.0624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051155895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:12 Heat of formation + Delta-G solvation = 103.904799 kcal Electronic energy + Delta-G solvation = -26537.410203 eV Core-core repulsion = 22638.841552 eV Total energy + Delta-G solvation = -3898.568651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -44.39950 -40.53741 -38.71190 -37.69413 -36.34820 -36.14778 -35.03753 -33.58299 -32.48414 -32.25473 -31.34000 -26.80460 -26.40606 -25.16050 -23.42179 -23.00445 -22.90743 -22.19272 -20.68578 -19.88481 -19.27603 -17.94246 -17.81491 -17.69282 -17.29385 -17.02522 -16.61287 -15.92474 -15.67378 -15.43810 -15.12188 -14.72394 -14.67520 -14.63490 -14.36554 -14.04087 -13.71098 -13.50310 -13.15416 -12.84319 -12.75620 -12.54920 -12.50467 -12.36894 -12.29290 -12.26416 -12.12080 -11.99350 -11.73356 -11.61339 -11.46316 -10.93426 -10.57033 -10.27294 -10.08142 -9.29569 -8.41493 -6.12115 -1.00314 -0.01378 0.09090 0.29321 0.56280 1.08483 1.49501 1.54630 1.58997 2.23164 2.37747 2.81803 2.91168 3.00729 3.22262 3.25662 3.48750 3.58448 3.63482 3.73531 4.03069 4.12402 4.17642 4.27541 4.31873 4.37054 4.45604 4.50116 4.66413 4.74433 4.81677 4.90416 5.03929 5.14953 5.20123 5.33925 5.48999 5.61935 5.64720 5.89189 6.30812 7.03045 7.15824 7.44126 8.61992 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.003976 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.880992 B = 7041.304628 C = 7802.439675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.252 1.252 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.291 4.291 8 H 0.095 0.905 9 N -0.801 5.801 10 C 0.069 3.931 11 C -0.154 4.154 12 C -0.197 4.197 13 S 2.579 3.421 14 O -1.025 7.025 15 O -0.983 6.983 16 C -0.669 4.669 17 C -0.014 4.014 18 C -0.131 4.131 19 C 0.159 3.841 20 N -0.331 5.331 21 C 0.251 3.749 22 N -0.354 5.354 23 N -0.055 5.055 24 N -0.101 5.101 25 C -0.120 4.120 26 C -0.016 4.016 27 H 0.275 0.725 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.135 0.865 34 H 0.146 0.854 35 H 0.299 0.701 36 H 0.195 0.805 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 -11.012 3.522 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.176 1.176 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.436 4.436 8 H 0.113 0.887 9 N -0.624 5.624 10 C -0.039 4.039 11 C -0.193 4.193 12 C -0.237 4.237 13 S 2.681 3.319 14 O -1.015 7.015 15 O -0.972 6.972 16 C -0.751 4.751 17 C -0.034 4.034 18 C -0.152 4.152 19 C 0.066 3.934 20 N -0.121 5.121 21 C -0.044 4.044 22 N -0.203 5.203 23 N -0.050 5.050 24 N -0.086 5.086 25 C -0.141 4.141 26 C -0.036 4.036 27 H 0.085 0.915 28 H 0.148 0.852 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.314 0.686 36 H 0.212 0.788 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.043 -10.142 4.720 13.219 hybrid contribution -0.233 0.987 -0.141 1.024 sum 6.809 -9.155 4.580 12.294 Atomic orbital electron populations 1.69983 1.08555 1.30298 1.36969 1.26433 0.95204 1.03484 0.93672 0.85496 0.78598 0.77768 0.79835 1.17632 1.21446 1.19038 1.19205 0.98733 0.86091 1.39550 0.88705 1.52277 1.73433 1.13628 1.23080 1.21656 1.06460 0.87867 0.87914 1.23195 0.93743 1.03743 0.98630 1.23212 0.95203 1.02300 1.02979 1.08898 0.76997 0.72383 0.73633 1.93302 1.61715 1.58862 1.87607 1.93392 1.82890 1.35716 1.85170 1.32260 1.21876 1.01843 1.19139 1.20814 0.91156 0.99533 0.91908 1.21102 0.99660 0.95159 0.99249 1.17813 0.89291 0.95349 0.90903 1.49153 1.25717 1.07112 1.30132 1.28614 0.92950 0.92193 0.90632 1.74445 1.15100 1.10994 1.19751 1.78076 1.16289 0.97498 1.13179 1.82697 1.02306 1.15910 1.07726 1.21366 0.94975 1.00358 0.97441 1.21073 0.94691 0.94183 0.93603 0.91507 0.85177 0.89031 0.86108 0.87262 0.91486 0.84745 0.83580 0.68633 0.78773 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.24 11.76 21.65 0.25 -43.98 16 2 C 0.03 1.30 3.98 84.86 0.34 1.64 16 3 Si 0.96 39.07 29.63 68.60 2.03 41.10 16 4 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.29 -13.34 7.92 84.04 0.67 -12.67 16 8 H 0.10 4.04 7.31 -2.91 -0.02 4.01 16 9 N -0.80 -34.97 3.03 -322.93 -0.98 -35.94 16 10 C 0.07 2.50 6.02 44.99 0.27 2.77 16 11 C -0.15 -4.73 9.82 30.62 0.30 -4.42 16 12 C -0.20 -6.94 10.35 30.62 0.32 -6.63 16 13 S 2.58 116.71 5.45 -56.49 -0.31 116.40 16 14 O -1.03 -48.96 16.50 -128.00 -2.11 -51.07 16 15 O -0.98 -51.92 13.49 -128.00 -1.73 -53.65 16 16 C -0.67 -23.53 5.97 22.29 0.13 -23.40 16 17 C -0.01 -0.49 9.51 22.25 0.21 -0.27 16 18 C -0.13 -3.71 9.70 22.38 0.22 -3.49 16 19 C 0.16 3.68 6.70 38.07 0.26 3.94 16 20 N -0.33 -7.25 3.85 -191.06 -0.74 -7.98 16 21 C 0.25 3.81 12.16 180.19 2.19 6.00 16 22 N -0.35 -8.05 12.15 -60.13 -0.73 -8.79 16 23 N -0.06 -1.55 13.39 37.02 0.50 -1.05 16 24 N -0.10 -2.80 13.34 37.02 0.49 -2.31 16 25 C -0.12 -2.23 9.49 22.38 0.21 -2.02 16 26 C -0.02 -0.42 9.51 22.25 0.21 -0.20 16 27 H 0.28 14.40 8.32 -92.71 -0.77 13.63 16 28 H 0.13 3.98 8.09 -2.39 -0.02 3.96 16 29 H 0.09 3.08 6.70 -2.39 -0.02 3.07 16 30 H 0.12 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 32 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.13 4.90 7.61 -2.91 -0.02 4.88 16 34 H 0.15 3.92 7.77 -2.91 -0.02 3.90 16 35 H 0.30 0.31 7.19 -2.91 -0.02 0.29 16 36 H 0.20 1.23 6.88 -2.91 -0.02 1.21 16 37 H 0.16 3.73 7.62 -2.91 -0.02 3.71 16 Total: -1.00 -71.69 336.99 3.13 -68.55 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.13 Total: 17.48 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 5.32 Total: -38.76 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -1.20 Total: -100.06 kcal Atomic # 8 Polarization: -100.88 SS G_CDS: -3.84 Total: -104.72 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Atomic # 16 Polarization: 116.71 SS G_CDS: -0.31 Total: 116.40 kcal Total: -71.69 3.13 -68.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051155895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.458 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds