Wall clock time and date at job start Tue Mar 31 2020 19:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99933 * 2 1 4 4 H 1.48499 * 109.47160 * 272.87847 * 3 2 1 5 5 H 1.48502 * 109.46627 * 32.87551 * 3 2 1 6 6 H 1.48499 * 109.46814 * 152.87416 * 3 2 1 7 7 C 1.38810 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99851 * 345.63547 * 7 2 1 9 9 N 1.36935 * 120.00369 * 165.63696 * 7 2 1 10 10 C 1.46505 * 119.99790 * 304.49053 * 9 7 2 11 11 C 1.53002 * 117.49555 * 2.84126 * 10 9 7 12 12 C 1.53005 * 117.50195 * 294.18454 * 10 9 7 13 13 S 1.65597 * 120.00407 * 124.49176 * 9 7 2 14 14 O 1.42104 * 106.40085 * 336.46145 * 13 9 7 15 15 O 1.42096 * 106.40482 * 203.54115 * 13 9 7 16 16 C 1.76199 * 107.21667 * 90.00140 * 13 9 7 17 17 C 1.38298 * 119.97152 * 90.00194 * 16 13 9 18 18 C 1.38251 * 120.13303 * 179.97438 * 17 16 13 19 19 C 1.38143 * 120.06266 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.93778 * 359.97438 * 19 18 17 21 21 N 1.40269 * 120.06455 * 180.02562 * 20 19 18 22 22 C 1.35058 * 127.38877 * 4.99583 * 21 20 19 23 23 N 1.30737 * 107.27403 * 179.97438 * 22 21 20 24 24 N 1.28418 * 110.64801 * 0.02562 * 23 22 21 25 25 N 1.28948 * 110.20410 * 359.74504 * 24 23 22 26 26 C 1.38110 * 119.96590 * 269.72545 * 16 13 9 27 27 H 0.96998 * 120.00228 * 0.02562 * 1 2 3 28 28 H 1.09005 * 115.55137 * 148.50557 * 10 9 7 29 29 H 1.08996 * 117.50320 * 0.02562 * 11 10 9 30 30 H 1.09007 * 117.49804 * 145.01676 * 11 10 9 31 31 H 1.08993 * 117.49757 * 214.97987 * 12 10 9 32 32 H 1.08999 * 117.49011 * 359.97084 * 12 10 9 33 33 H 1.07999 * 119.92919 * 359.97438 * 17 16 13 34 34 H 1.07996 * 119.96874 * 179.97438 * 18 17 16 35 35 H 1.08004 * 120.02929 * 180.02562 * 19 18 17 36 36 H 1.07996 * 126.36590 * 359.94154 * 22 21 20 37 37 H 1.07997 * 120.03609 * 0.02562 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4368 2.0817 -1.3983 5 1 1.4793 2.6343 0.7600 6 1 3.5768 1.4234 0.6384 7 6 2.0103 -1.2021 0.0005 8 1 1.4957 -2.1227 0.2330 9 7 3.3476 -1.2208 -0.2936 10 6 3.8285 -0.6481 -1.5534 11 6 2.7962 0.0150 -2.4676 12 6 3.4021 -1.3373 -2.8512 13 16 4.4212 -1.8906 0.7745 14 8 3.8000 -1.8416 2.0517 15 8 5.6829 -1.2971 0.5007 16 6 4.5733 -3.5965 0.3604 17 6 5.5355 -4.0043 -0.5454 18 6 5.6582 -5.3420 -0.8724 19 6 4.8190 -6.2753 -0.2952 20 6 3.8524 -5.8690 0.6141 21 7 2.9993 -6.8145 1.2022 22 6 3.0453 -8.1574 1.0661 23 7 2.0707 -8.6538 1.7823 24 7 1.4114 -7.7163 2.3615 25 7 1.9159 -6.5676 2.0639 26 6 3.7353 -4.5257 0.9449 27 1 -0.4850 0.8400 -0.0004 28 1 4.8263 -0.2104 -1.5203 29 1 1.7594 0.0256 -2.1315 30 1 3.1150 0.8887 -3.0362 31 1 4.1192 -1.3529 -3.6719 32 1 2.7641 -2.2172 -2.7675 33 1 6.1924 -3.2764 -0.9982 34 1 6.4102 -5.6575 -1.5804 35 1 4.9156 -7.3202 -0.5508 36 1 3.7549 -8.7172 0.4750 37 1 2.9868 -4.2072 1.6552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063518936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:25 Heat of formation + Delta-G solvation = 131.697042 kcal Electronic energy + Delta-G solvation = -26844.172885 eV Core-core repulsion = 22946.809396 eV Total energy + Delta-G solvation = -3897.363489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.32942 -39.62720 -37.63579 -36.39170 -35.28829 -34.95855 -33.09533 -32.52925 -31.51666 -31.42254 -30.32939 -25.30379 -24.90081 -24.30619 -22.48111 -22.01354 -21.94401 -20.98262 -19.47614 -18.50944 -17.22696 -16.95130 -16.74501 -16.67882 -16.45800 -15.79822 -15.54842 -15.07672 -14.45287 -14.16666 -13.97295 -13.69220 -13.50069 -13.38780 -13.11051 -12.73048 -12.34787 -11.97633 -11.89645 -11.81161 -11.56188 -11.35550 -11.26146 -11.19112 -11.13343 -10.87514 -10.65697 -10.64649 -10.49687 -10.17537 -10.00464 -9.63269 -9.49006 -8.92834 -8.83548 -7.91389 -6.54063 -4.33696 0.11474 0.67493 1.16085 1.41728 1.58655 2.11223 3.13994 3.17985 3.25844 3.33164 3.79248 3.87909 4.00320 4.15590 4.39354 4.44070 4.49800 4.56753 4.63505 4.85644 4.89646 4.94453 5.19691 5.23111 5.37228 5.55147 5.58235 5.68981 5.70928 5.80911 5.87658 5.96337 6.04231 6.12333 6.23192 6.54842 6.62199 6.94012 7.21801 7.50798 8.14638 8.24647 8.95348 8.99385 10.51380 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.004526 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.040929 B = 6185.675325 C = 6909.271090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.877 3.123 4 H -0.257 1.257 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.293 4.293 8 H 0.100 0.900 9 N -0.832 5.832 10 C 0.071 3.929 11 C -0.180 4.180 12 C -0.193 4.193 13 S 2.621 3.379 14 O -0.951 6.951 15 O -0.993 6.993 16 C -0.632 4.632 17 C -0.012 4.012 18 C -0.120 4.120 19 C -0.080 4.080 20 C 0.100 3.900 21 N -0.322 5.322 22 C 0.219 3.781 23 N -0.333 5.333 24 N -0.038 5.038 25 N -0.062 5.062 26 C 0.004 3.996 27 H 0.279 0.721 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.238 0.762 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.954 -10.103 -6.722 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.182 1.182 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.432 4.432 8 H 0.117 0.883 9 N -0.661 5.661 10 C -0.037 4.037 11 C -0.219 4.219 12 C -0.233 4.233 13 S 2.720 3.280 14 O -0.940 6.940 15 O -0.982 6.982 16 C -0.714 4.714 17 C -0.032 4.032 18 C -0.139 4.139 19 C -0.101 4.101 20 C 0.007 3.993 21 N -0.112 5.112 22 C -0.078 4.078 23 N -0.181 5.181 24 N -0.033 5.033 25 N -0.047 5.047 26 C -0.017 4.017 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.254 0.746 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.216 -9.697 -5.042 14.961 hybrid contribution 0.934 0.217 -0.978 1.370 sum 11.151 -9.480 -6.021 15.826 Atomic orbital electron populations 1.69805 1.06358 1.28717 1.43481 1.25745 0.95096 0.99326 0.92795 0.86896 0.80893 0.82665 0.79295 1.18163 1.21393 1.18875 1.18604 0.80465 0.95510 1.48596 0.88289 1.52343 1.16602 1.71855 1.25303 1.21684 0.97513 1.02436 0.82031 1.23542 1.01259 0.94988 1.02103 1.23289 1.04109 0.97440 0.98414 1.05977 0.73444 0.73485 0.75138 1.93497 1.76233 1.85472 1.38838 1.93419 1.44838 1.74264 1.85714 1.31686 1.03970 1.27652 1.08071 1.21172 0.93614 0.96782 0.91625 1.21117 0.99630 0.92608 1.00547 1.21023 0.93638 1.00872 0.94545 1.17609 0.93905 0.88353 0.99389 1.49092 1.22668 1.06372 1.33073 1.27364 0.99274 0.82109 0.99074 1.74456 1.06440 1.25430 1.11824 1.78107 1.17894 0.92765 1.14499 1.82873 0.96878 1.18254 1.06698 1.20802 0.95914 0.89486 0.95482 0.91114 0.86045 0.85816 0.89566 0.89721 0.88510 0.83327 0.83737 0.84424 0.74619 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.60 13.97 55.49 0.78 -21.82 16 2 C 0.08 2.12 3.78 -17.43 -0.07 2.05 16 3 Si 0.88 20.15 24.76 -169.99 -4.21 15.94 16 4 H -0.26 -5.29 5.80 56.52 0.33 -4.96 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.29 -7.29 8.60 -15.06 -0.13 -7.42 16 8 H 0.10 2.63 8.06 -52.48 -0.42 2.20 16 9 N -0.83 -18.15 2.44 -53.42 -0.13 -18.28 16 10 C 0.07 1.35 4.88 -67.92 -0.33 1.02 16 11 C -0.18 -3.33 6.65 -26.69 -0.18 -3.50 16 12 C -0.19 -3.10 10.37 -26.69 -0.28 -3.38 16 13 S 2.62 54.99 5.65 -107.50 -0.61 54.38 16 14 O -0.95 -23.20 16.49 -57.17 -0.94 -24.15 16 15 O -0.99 -21.12 16.12 -57.17 -0.92 -22.04 16 16 C -0.63 -10.51 5.97 -39.61 -0.24 -10.74 16 17 C -0.01 -0.16 9.52 -39.55 -0.38 -0.54 16 18 C -0.12 -1.12 10.04 -39.61 -0.40 -1.52 16 19 C -0.08 -0.74 9.49 -39.41 -0.37 -1.11 16 20 C 0.10 1.33 6.70 -83.57 -0.56 0.77 16 21 N -0.32 -4.39 3.85 -11.74 -0.05 -4.44 16 22 C 0.22 2.27 12.15 -90.16 -1.10 1.18 16 23 N -0.33 -4.61 12.15 29.64 0.36 -4.25 16 24 N -0.04 -0.63 13.39 60.35 0.81 0.18 16 25 N -0.06 -1.06 13.35 60.35 0.81 -0.25 16 26 C 0.00 0.07 9.17 -39.41 -0.36 -0.29 16 27 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.12 2.13 7.48 -51.93 -0.39 1.75 16 29 H 0.12 2.64 5.08 -51.93 -0.26 2.38 16 30 H 0.09 1.41 7.84 -51.93 -0.41 1.00 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.15 1.71 7.61 -52.49 -0.40 1.31 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.14 0.66 6.91 -52.48 -0.36 0.29 16 36 H 0.24 0.95 7.22 -52.49 -0.38 0.57 16 37 H 0.16 2.96 7.33 -52.49 -0.38 2.58 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -32.40 329.68 -7.01 -39.41 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.48 Total: 3.83 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -4.38 Total: -23.48 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 2.57 Total: -48.87 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.86 Total: -46.19 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.21 Total: 15.94 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.61 Total: 54.38 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.40 -7.01 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063518936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.108 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds