Wall clock time and date at job start Tue Mar 31 2020 19:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99933 * 2 1 4 4 H 1.48499 * 109.47160 * 272.87847 * 3 2 1 5 5 H 1.48502 * 109.46627 * 32.87551 * 3 2 1 6 6 H 1.48499 * 109.46814 * 152.87416 * 3 2 1 7 7 C 1.38810 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99851 * 345.63547 * 7 2 1 9 9 N 1.36935 * 120.00369 * 165.63696 * 7 2 1 10 10 C 1.46505 * 119.99790 * 304.49053 * 9 7 2 11 11 C 1.53002 * 117.49555 * 2.84126 * 10 9 7 12 12 C 1.53005 * 117.50195 * 294.18454 * 10 9 7 13 13 S 1.65597 * 120.00407 * 124.49176 * 9 7 2 14 14 O 1.42104 * 106.40085 * 336.46145 * 13 9 7 15 15 O 1.42096 * 106.40482 * 203.54115 * 13 9 7 16 16 C 1.76199 * 107.21667 * 90.00140 * 13 9 7 17 17 C 1.38298 * 119.97152 * 90.00194 * 16 13 9 18 18 C 1.38251 * 120.13303 * 179.97438 * 17 16 13 19 19 C 1.38143 * 120.06266 * 0.02562 * 18 17 16 20 20 C 1.38793 * 119.93778 * 359.97438 * 19 18 17 21 21 N 1.40269 * 120.06455 * 180.02562 * 20 19 18 22 22 C 1.35058 * 127.38877 * 4.99583 * 21 20 19 23 23 N 1.30737 * 107.27403 * 179.97438 * 22 21 20 24 24 N 1.28418 * 110.64801 * 0.02562 * 23 22 21 25 25 N 1.28948 * 110.20410 * 359.74504 * 24 23 22 26 26 C 1.38110 * 119.96590 * 269.72545 * 16 13 9 27 27 H 0.96998 * 120.00228 * 0.02562 * 1 2 3 28 28 H 1.09005 * 115.55137 * 148.50557 * 10 9 7 29 29 H 1.08996 * 117.50320 * 0.02562 * 11 10 9 30 30 H 1.09007 * 117.49804 * 145.01676 * 11 10 9 31 31 H 1.08993 * 117.49757 * 214.97987 * 12 10 9 32 32 H 1.08999 * 117.49011 * 359.97084 * 12 10 9 33 33 H 1.07999 * 119.92919 * 359.97438 * 17 16 13 34 34 H 1.07996 * 119.96874 * 179.97438 * 18 17 16 35 35 H 1.08004 * 120.02929 * 180.02562 * 19 18 17 36 36 H 1.07996 * 126.36590 * 359.94154 * 22 21 20 37 37 H 1.07997 * 120.03609 * 0.02562 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4368 2.0817 -1.3983 5 1 1.4793 2.6343 0.7600 6 1 3.5768 1.4234 0.6384 7 6 2.0103 -1.2021 0.0005 8 1 1.4957 -2.1227 0.2330 9 7 3.3476 -1.2208 -0.2936 10 6 3.8285 -0.6481 -1.5534 11 6 2.7962 0.0150 -2.4676 12 6 3.4021 -1.3373 -2.8512 13 16 4.4212 -1.8906 0.7745 14 8 3.8000 -1.8416 2.0517 15 8 5.6829 -1.2971 0.5007 16 6 4.5733 -3.5965 0.3604 17 6 5.5355 -4.0043 -0.5454 18 6 5.6582 -5.3420 -0.8724 19 6 4.8190 -6.2753 -0.2952 20 6 3.8524 -5.8690 0.6141 21 7 2.9993 -6.8145 1.2022 22 6 3.0453 -8.1574 1.0661 23 7 2.0707 -8.6538 1.7823 24 7 1.4114 -7.7163 2.3615 25 7 1.9159 -6.5676 2.0639 26 6 3.7353 -4.5257 0.9449 27 1 -0.4850 0.8400 -0.0004 28 1 4.8263 -0.2104 -1.5203 29 1 1.7594 0.0256 -2.1315 30 1 3.1150 0.8887 -3.0362 31 1 4.1192 -1.3529 -3.6719 32 1 2.7641 -2.2172 -2.7675 33 1 6.1924 -3.2764 -0.9982 34 1 6.4102 -5.6575 -1.5804 35 1 4.9156 -7.3202 -0.5508 36 1 3.7549 -8.7172 0.4750 37 1 2.9868 -4.2072 1.6552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063518936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:23 Heat of formation + Delta-G solvation = 106.839646 kcal Electronic energy + Delta-G solvation = -26845.250782 eV Core-core repulsion = 22946.809396 eV Total energy + Delta-G solvation = -3898.441386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.37200 -40.62655 -39.18976 -38.16675 -36.77845 -36.32143 -34.83937 -33.57576 -33.27849 -32.45233 -31.34954 -26.76208 -26.31573 -25.37004 -23.56349 -23.30042 -23.06542 -22.53942 -20.70623 -20.16790 -18.87871 -18.51743 -17.79972 -17.76667 -17.56684 -17.16377 -16.71895 -16.63224 -15.94502 -15.51629 -15.26499 -15.07143 -14.93765 -14.68380 -14.39984 -13.81393 -13.72433 -13.44523 -13.31722 -13.12195 -13.03616 -12.96858 -12.86242 -12.81818 -12.51841 -12.21156 -12.18702 -12.04830 -11.88542 -11.72668 -11.64583 -11.03042 -10.70221 -10.52982 -9.93938 -9.58842 -8.47657 -6.30822 -0.84271 -0.55140 -0.28548 0.41237 0.63820 1.12203 1.29171 1.36572 1.44458 2.07191 2.24995 2.41317 2.73689 2.87232 2.92712 3.19020 3.25267 3.42094 3.56891 3.75949 3.85448 3.92003 4.10010 4.13439 4.21850 4.28656 4.31375 4.36896 4.56756 4.62118 4.82856 4.93636 4.97479 5.00858 5.18563 5.20175 5.52952 5.62204 5.63846 5.65124 6.18072 7.04552 7.08676 7.18851 8.63258 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.004526 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.040929 B = 6185.675325 C = 6909.271090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.214 1.214 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.304 4.304 8 H 0.060 0.940 9 N -0.843 5.843 10 C 0.041 3.959 11 C -0.195 4.195 12 C -0.158 4.158 13 S 2.645 3.355 14 O -1.002 7.002 15 O -0.994 6.994 16 C -0.649 4.649 17 C -0.016 4.016 18 C -0.095 4.095 19 C -0.047 4.047 20 C 0.091 3.909 21 N -0.328 5.328 22 C 0.249 3.751 23 N -0.356 5.356 24 N -0.060 5.060 25 N -0.117 5.117 26 C -0.030 4.030 27 H 0.279 0.721 28 H 0.140 0.860 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.166 0.834 34 H 0.205 0.795 35 H 0.204 0.796 36 H 0.309 0.691 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.607 -13.032 -10.578 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.137 1.137 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.439 4.439 8 H 0.078 0.922 9 N -0.673 5.673 10 C -0.066 4.066 11 C -0.233 4.233 12 C -0.197 4.197 13 S 2.747 3.253 14 O -0.992 6.992 15 O -0.984 6.984 16 C -0.739 4.739 17 C -0.036 4.036 18 C -0.114 4.114 19 C -0.067 4.067 20 C -0.002 4.002 21 N -0.118 5.118 22 C -0.046 4.046 23 N -0.205 5.205 24 N -0.055 5.055 25 N -0.103 5.103 26 C -0.052 4.052 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.150 0.850 32 H 0.101 0.899 33 H 0.183 0.817 34 H 0.222 0.778 35 H 0.221 0.779 36 H 0.324 0.676 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.793 -12.518 -8.931 21.337 hybrid contribution -0.251 0.771 0.151 0.825 sum 14.542 -11.746 -8.779 20.652 Atomic orbital electron populations 1.69887 1.07648 1.29181 1.47135 1.26184 0.95432 1.01608 0.92720 0.86390 0.78811 0.79931 0.81362 1.13663 1.22169 1.20356 1.18160 0.82270 0.94124 1.49379 0.92245 1.52369 1.15539 1.72102 1.27272 1.22053 0.98345 1.04317 0.81842 1.23515 0.99402 0.97684 1.02746 1.23329 1.03384 0.95414 0.97583 1.03766 0.72598 0.75156 0.73777 1.93453 1.77184 1.87199 1.41382 1.93418 1.43416 1.75916 1.85654 1.30734 1.07348 1.23967 1.11813 1.21577 0.92237 0.99575 0.90215 1.21795 0.99545 0.90323 0.99693 1.21825 0.90059 1.04200 0.90667 1.17843 0.95016 0.86853 1.00446 1.49130 1.22092 1.07731 1.32841 1.28685 0.98262 0.80663 0.96999 1.74371 1.07739 1.25497 1.12907 1.78097 1.18849 0.93221 1.15330 1.82875 0.99232 1.19047 1.09117 1.20522 0.96218 0.92037 0.96436 0.91123 0.84234 0.89235 0.86804 0.84996 0.89921 0.81662 0.77771 0.77871 0.67621 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.97 13.97 21.65 0.30 -51.67 16 2 C 0.05 2.61 3.78 84.86 0.32 2.93 16 3 Si 0.91 42.70 24.76 68.60 1.70 44.40 16 4 H -0.21 -8.44 5.80 99.48 0.58 -7.87 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.30 -16.39 8.60 84.03 0.72 -15.66 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 N -0.84 -38.15 2.44 -322.91 -0.79 -38.93 16 10 C 0.04 1.51 4.88 44.99 0.22 1.73 16 11 C -0.19 -6.96 6.65 30.62 0.20 -6.75 16 12 C -0.16 -4.68 10.37 30.62 0.32 -4.36 16 13 S 2.65 114.97 5.65 -56.49 -0.32 114.65 16 14 O -1.00 -53.03 16.49 -128.00 -2.11 -55.14 16 15 O -0.99 -41.81 16.12 -128.00 -2.06 -43.87 16 16 C -0.65 -21.38 5.97 22.25 0.13 -21.25 16 17 C -0.02 -0.35 9.52 22.29 0.21 -0.14 16 18 C -0.09 -1.06 10.04 22.25 0.22 -0.83 16 19 C -0.05 -0.54 9.49 22.38 0.21 -0.33 16 20 C 0.09 2.20 6.70 38.07 0.25 2.45 16 21 N -0.33 -8.40 3.85 -191.07 -0.74 -9.14 16 22 C 0.25 4.13 12.15 180.19 2.19 6.32 16 23 N -0.36 -9.29 12.15 -60.14 -0.73 -10.02 16 24 N -0.06 -2.05 13.39 37.02 0.50 -1.55 16 25 N -0.12 -4.21 13.35 37.02 0.49 -3.71 16 26 C -0.03 -1.04 9.17 22.38 0.21 -0.84 16 27 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.14 4.58 7.48 -2.38 -0.02 4.57 16 29 H 0.09 3.92 5.08 -2.39 -0.01 3.91 16 30 H 0.11 3.37 7.84 -2.38 -0.02 3.36 16 31 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.17 2.98 7.61 -2.91 -0.02 2.96 16 34 H 0.21 0.08 8.06 -2.91 -0.02 0.05 16 35 H 0.20 -0.29 6.91 -2.91 -0.02 -0.31 16 36 H 0.31 -0.15 7.22 -2.91 -0.02 -0.17 16 37 H 0.12 4.90 7.33 -2.91 -0.02 4.88 16 Total: -1.00 -85.73 329.68 2.46 -83.27 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.00 Total: 8.45 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 5.22 Total: -36.74 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -0.96 Total: -115.02 kcal Atomic # 8 Polarization: -94.84 SS G_CDS: -4.17 Total: -99.01 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.70 Total: 44.40 kcal Atomic # 16 Polarization: 114.97 SS G_CDS: -0.32 Total: 114.65 kcal Total: -85.73 2.46 -83.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063518936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.110 kcal (2) G-P(sol) polarization free energy of solvation -85.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds