Wall clock time and date at job start Tue Mar 31 2020 18:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47201 * 2 1 4 4 S 1.81403 * 109.47088 * 239.99881 * 2 1 3 5 5 C 1.76203 * 102.99731 * 66.89138 * 4 2 1 6 6 C 1.38974 * 120.07561 * 269.00896 * 5 4 2 7 7 C 1.38080 * 119.91361 * 179.76692 * 6 5 4 8 8 C 1.38303 * 120.08270 * 0.49192 * 7 6 5 9 9 N 1.48002 * 119.92256 * 179.74383 * 8 7 6 10 10 O 1.21798 * 120.00346 * 180.02562 * 9 8 7 11 11 O 1.21806 * 120.00074 * 0.02562 * 9 8 7 12 12 C 1.38301 * 120.15932 * 359.75898 * 8 7 6 13 13 C 1.38085 * 120.07973 * 0.02562 * 12 8 7 14 14 C 1.50706 * 109.46848 * 120.00019 * 2 1 3 15 15 O 1.21292 * 119.99522 * 100.00021 * 14 2 1 16 16 N 1.34769 * 119.99832 * 279.99777 * 14 2 1 17 17 C 1.37100 * 119.99904 * 180.02562 * 16 14 2 18 18 H 1.08004 * 120.00142 * 138.10169 * 17 16 14 19 19 C 1.38954 * 120.00136 * 317.83130 * 17 16 14 20 20 N 1.31413 * 120.00330 * 157.83527 * 19 17 16 21 21 Si 1.86800 * 119.99700 * 337.83371 * 19 17 16 22 22 H 1.48500 * 109.47205 * 95.29099 * 21 19 17 23 23 H 1.48498 * 109.46893 * 215.29148 * 21 19 17 24 24 H 1.48499 * 109.47287 * 335.29114 * 21 19 17 25 25 C 1.46496 * 120.00308 * 0.02562 * 16 14 2 26 26 C 1.47197 * 109.47336 * 271.17642 * 25 16 14 27 27 N 4.12207 * 120.43155 * 34.69021 * 2 1 3 28 28 H 1.08998 * 109.47268 * 179.90977 * 1 2 3 29 29 H 1.09000 * 109.47504 * 299.91130 * 1 2 3 30 30 H 1.09002 * 109.47188 * 59.91187 * 1 2 3 31 31 H 1.07996 * 120.04268 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.95999 * 180.23240 * 7 6 5 33 33 H 1.08002 * 119.95879 * 179.97438 * 12 8 7 34 34 H 1.08000 * 120.03576 * 179.97438 * 13 12 8 35 35 H 0.96994 * 119.99728 * 180.02562 * 20 19 17 36 36 H 1.09000 * 109.47225 * 31.17818 * 25 16 14 37 37 H 1.09004 * 109.47364 * 151.17963 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.6315 0.2132 -2.7888 6 6 0.3983 0.0295 -3.4028 7 6 0.0053 0.8718 -4.4240 8 6 0.8414 1.8908 -4.8428 9 7 0.4189 2.7879 -5.9415 10 8 1.1543 3.6855 -6.3117 11 8 -0.6642 2.6286 -6.4755 12 6 2.0715 2.0733 -4.2375 13 6 2.4693 1.2377 -3.2127 14 6 2.0323 -0.7105 1.2305 15 8 2.4064 -1.8618 1.1557 16 7 2.0658 -0.0664 2.4139 17 6 2.5233 -0.7126 3.5332 18 1 3.1692 -0.1968 4.2284 19 6 2.1513 -2.0291 3.7763 20 7 2.8870 -2.7860 4.5591 21 14 0.6054 -2.7232 2.9902 22 1 0.9640 -3.4350 1.7372 23 1 -0.0445 -3.6718 3.9297 24 1 -0.3321 -1.6145 2.6787 25 6 1.6135 1.3240 2.5043 26 6 2.7442 2.2265 2.2324 27 7 3.6179 2.9224 2.0228 28 1 -0.3634 -1.0276 -0.0016 29 1 -0.3634 0.5124 0.8908 30 1 -0.3634 0.5152 -0.8892 31 1 -0.2531 -0.7688 -3.0794 32 1 -0.9544 0.7320 -4.8992 33 1 2.7220 2.8698 -4.5674 34 1 3.4302 1.3806 -2.7408 35 1 2.6275 -3.7052 4.7284 36 1 0.8254 1.4981 1.7717 37 1 1.2278 1.5163 3.5055 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072058590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:10 Heat of formation + Delta-G solvation = 45.970074 kcal Electronic energy + Delta-G solvation = -25667.887035 eV Core-core repulsion = 21734.513394 eV Total energy + Delta-G solvation = -3933.373640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48419 -39.64938 -39.57508 -36.87364 -36.45398 -34.67754 -33.48699 -32.42370 -31.96504 -31.83794 -27.95208 -26.96344 -25.69689 -23.70168 -23.36368 -22.85741 -20.26589 -19.73018 -18.95589 -18.26371 -18.10722 -17.83795 -17.16953 -16.13807 -15.98257 -15.78790 -15.39828 -15.09985 -14.41536 -14.32570 -14.14274 -13.87329 -13.58612 -13.38108 -13.20593 -12.80270 -12.68106 -12.35477 -12.27521 -12.08142 -11.96241 -11.86295 -11.78826 -11.50230 -11.43777 -11.21465 -11.12999 -10.75334 -10.49692 -10.15709 -9.85393 -9.54521 -8.97232 -8.85146 -8.13270 -7.88489 -6.46113 -4.26279 -0.68389 0.50726 0.78630 1.01898 1.35873 2.26289 2.81297 2.89402 2.97367 3.00592 3.21920 3.43748 3.47092 3.92362 4.02779 4.04073 4.26687 4.34123 4.42759 4.47653 4.78730 4.80912 4.83077 4.89293 5.10244 5.11878 5.19561 5.26340 5.27511 5.44098 5.54642 5.56709 5.69001 5.76968 5.97363 6.07105 7.31273 7.53166 7.54610 7.75423 8.38381 8.50677 9.10247 9.34357 10.59357 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.003287 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.884924 B = 8516.721770 C = 9261.960951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 H 0.101 0.899 4 S -0.057 6.057 5 C -0.083 4.083 6 C -0.071 4.071 7 C -0.064 4.064 8 C -0.029 4.029 9 N 0.027 4.973 10 O -0.158 6.158 11 O -0.158 6.158 12 C -0.062 4.062 13 C -0.072 4.072 14 C 0.473 3.527 15 O -0.509 6.509 16 N -0.449 5.449 17 C -0.363 4.363 18 H 0.100 0.900 19 C 0.101 3.899 20 N -0.848 5.848 21 Si 0.895 3.105 22 H -0.251 1.251 23 H -0.300 1.300 24 H -0.273 1.273 25 C 0.184 3.816 26 C 0.199 3.801 27 N -0.438 5.438 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.277 0.723 36 H 0.104 0.896 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 7.248 -13.641 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.235 4.235 3 H 0.119 0.881 4 S 0.176 5.824 5 C -0.194 4.194 6 C -0.092 4.092 7 C -0.085 4.085 8 C -0.112 4.112 9 N 0.546 4.454 10 O -0.374 6.374 11 O -0.374 6.374 12 C -0.083 4.083 13 C -0.093 4.093 14 C 0.260 3.740 15 O -0.388 6.388 16 N -0.172 5.172 17 C -0.488 4.488 18 H 0.117 0.883 19 C -0.111 4.111 20 N -0.481 5.481 21 Si 0.723 3.277 22 H -0.176 1.176 23 H -0.228 1.228 24 H -0.198 1.198 25 C 0.057 3.943 26 C -0.121 4.121 27 N -0.117 5.117 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.366 6.050 -13.349 15.979 hybrid contribution -1.751 0.911 -0.430 2.020 sum -8.116 6.961 -13.779 17.441 Atomic orbital electron populations 1.22176 0.91420 1.04398 1.02875 1.23737 1.00554 1.03119 0.96068 0.88063 1.86488 1.74799 1.27393 0.93669 1.22790 0.96414 0.98855 1.01361 1.21800 0.95352 0.98261 0.93781 1.21139 0.99942 0.91719 0.95656 1.21293 0.98559 0.96762 0.94566 1.43662 1.00224 1.00509 1.00960 1.94552 1.51484 1.24667 1.66730 1.94545 1.09108 1.76973 1.56816 1.21148 0.93571 0.99518 0.94094 1.21827 1.00367 0.92246 0.94822 1.19381 0.83547 0.88378 0.82697 1.90641 1.48317 1.16346 1.83480 1.43403 1.57996 1.08510 1.07274 1.18804 1.31603 0.97112 1.01289 0.88255 1.25250 0.96721 0.95514 0.93601 1.69756 1.35283 1.07539 1.35495 0.86631 0.81276 0.79546 0.80237 1.17625 1.22782 1.19762 1.19343 0.88265 0.81361 1.05355 1.30208 0.95283 0.93736 0.92854 1.81122 1.09900 1.11123 1.09535 0.90311 0.90456 0.91784 0.82453 0.82485 0.82503 0.82570 0.91313 0.87829 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.83 37.16 0.33 -1.42 16 2 C -0.10 -1.51 2.30 -27.88 -0.06 -1.58 16 3 H 0.10 1.31 6.70 -51.93 -0.35 0.97 16 4 S -0.06 -0.81 20.34 -107.50 -2.19 -3.00 16 5 C -0.08 -0.87 5.29 -39.04 -0.21 -1.07 16 6 C -0.07 -0.61 8.89 -39.37 -0.35 -0.96 16 7 C -0.06 -0.53 9.55 -39.62 -0.38 -0.91 16 8 C -0.03 -0.29 6.85 -79.91 -0.55 -0.83 16 9 N 0.03 0.31 4.45 33.98 0.15 0.47 16 10 O -0.16 -1.98 18.44 -29.46 -0.54 -2.53 16 11 O -0.16 -1.94 18.44 -29.46 -0.54 -2.49 16 12 C -0.06 -0.56 9.55 -39.61 -0.38 -0.94 16 13 C -0.07 -0.67 9.79 -39.37 -0.39 -1.06 16 14 C 0.47 9.54 5.10 -10.99 -0.06 9.48 16 15 O -0.51 -12.51 11.74 5.55 0.07 -12.45 16 16 N -0.45 -9.01 2.11 -117.93 -0.25 -9.26 16 17 C -0.36 -8.99 9.67 -14.93 -0.14 -9.14 16 18 H 0.10 2.63 8.06 -52.48 -0.42 2.20 16 19 C 0.10 2.67 4.76 -17.47 -0.08 2.58 16 20 N -0.85 -23.86 13.96 55.50 0.77 -23.09 16 21 Si 0.89 20.78 25.01 -169.99 -4.25 16.53 16 22 H -0.25 -6.20 6.38 56.52 0.36 -5.84 16 23 H -0.30 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C 0.18 2.61 5.49 -6.83 -0.04 2.57 16 26 C 0.20 3.15 15.11 -20.75 -0.31 2.84 16 27 N -0.44 -7.82 18.54 42.17 0.78 -7.04 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.80 6.30 -51.93 -0.33 0.48 16 30 H 0.06 0.57 6.88 -51.93 -0.36 0.21 16 31 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.16 1.05 7.60 -52.49 -0.40 0.65 16 33 H 0.16 1.18 7.60 -52.49 -0.40 0.78 16 34 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.10 1.08 4.80 -51.93 -0.25 0.83 16 37 H 0.13 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -32.52 343.35 -6.81 -39.32 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.36 Total: -1.21 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.62 Total: -0.43 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 1.46 Total: -38.93 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.02 Total: -17.46 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.25 Total: 16.53 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.19 Total: -3.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.52 -6.81 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072058590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.293 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds