Wall clock time and date at job start Tue Mar 31 2020 18:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47201 * 2 1 4 4 S 1.81403 * 109.47088 * 239.99881 * 2 1 3 5 5 C 1.76203 * 102.99731 * 66.89138 * 4 2 1 6 6 C 1.38974 * 120.07561 * 269.00896 * 5 4 2 7 7 C 1.38080 * 119.91361 * 179.76692 * 6 5 4 8 8 C 1.38303 * 120.08270 * 0.49192 * 7 6 5 9 9 N 1.48002 * 119.92256 * 179.74383 * 8 7 6 10 10 O 1.21798 * 120.00346 * 180.02562 * 9 8 7 11 11 O 1.21806 * 120.00074 * 0.02562 * 9 8 7 12 12 C 1.38301 * 120.15932 * 359.75898 * 8 7 6 13 13 C 1.38085 * 120.07973 * 0.02562 * 12 8 7 14 14 C 1.50706 * 109.46848 * 120.00019 * 2 1 3 15 15 O 1.21292 * 119.99522 * 100.00021 * 14 2 1 16 16 N 1.34769 * 119.99832 * 279.99777 * 14 2 1 17 17 C 1.37100 * 119.99904 * 180.02562 * 16 14 2 18 18 H 1.08004 * 120.00142 * 138.10169 * 17 16 14 19 19 C 1.38954 * 120.00136 * 317.83130 * 17 16 14 20 20 N 1.31413 * 120.00330 * 157.83527 * 19 17 16 21 21 Si 1.86800 * 119.99700 * 337.83371 * 19 17 16 22 22 H 1.48500 * 109.47205 * 95.29099 * 21 19 17 23 23 H 1.48498 * 109.46893 * 215.29148 * 21 19 17 24 24 H 1.48499 * 109.47287 * 335.29114 * 21 19 17 25 25 C 1.46496 * 120.00308 * 0.02562 * 16 14 2 26 26 C 1.47197 * 109.47336 * 271.17642 * 25 16 14 27 27 N 4.12207 * 120.43155 * 34.69021 * 2 1 3 28 28 H 1.08998 * 109.47268 * 179.90977 * 1 2 3 29 29 H 1.09000 * 109.47504 * 299.91130 * 1 2 3 30 30 H 1.09002 * 109.47188 * 59.91187 * 1 2 3 31 31 H 1.07996 * 120.04268 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.95999 * 180.23240 * 7 6 5 33 33 H 1.08002 * 119.95879 * 179.97438 * 12 8 7 34 34 H 1.08000 * 120.03576 * 179.97438 * 13 12 8 35 35 H 0.96994 * 119.99728 * 180.02562 * 20 19 17 36 36 H 1.09000 * 109.47225 * 31.17818 * 25 16 14 37 37 H 1.09004 * 109.47364 * 151.17963 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.6315 0.2132 -2.7888 6 6 0.3983 0.0295 -3.4028 7 6 0.0053 0.8718 -4.4240 8 6 0.8414 1.8908 -4.8428 9 7 0.4189 2.7879 -5.9415 10 8 1.1543 3.6855 -6.3117 11 8 -0.6642 2.6286 -6.4755 12 6 2.0715 2.0733 -4.2375 13 6 2.4693 1.2377 -3.2127 14 6 2.0323 -0.7105 1.2305 15 8 2.4064 -1.8618 1.1557 16 7 2.0658 -0.0664 2.4139 17 6 2.5233 -0.7126 3.5332 18 1 3.1692 -0.1968 4.2284 19 6 2.1513 -2.0291 3.7763 20 7 2.8870 -2.7860 4.5591 21 14 0.6054 -2.7232 2.9902 22 1 0.9640 -3.4350 1.7372 23 1 -0.0445 -3.6718 3.9297 24 1 -0.3321 -1.6145 2.6787 25 6 1.6135 1.3240 2.5043 26 6 2.7442 2.2265 2.2324 27 7 3.6179 2.9224 2.0228 28 1 -0.3634 -1.0276 -0.0016 29 1 -0.3634 0.5124 0.8908 30 1 -0.3634 0.5152 -0.8892 31 1 -0.2531 -0.7688 -3.0794 32 1 -0.9544 0.7320 -4.8992 33 1 2.7220 2.8698 -4.5674 34 1 3.4302 1.3806 -2.7408 35 1 2.6275 -3.7052 4.7284 36 1 0.8254 1.4981 1.7717 37 1 1.2278 1.5163 3.5055 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072058590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:09 Heat of formation + Delta-G solvation = 26.906106 kcal Electronic energy + Delta-G solvation = -25668.713710 eV Core-core repulsion = 21734.513394 eV Total energy + Delta-G solvation = -3934.200316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.33166 -41.13255 -40.38592 -37.86264 -37.75748 -36.26780 -34.87078 -33.70059 -33.05070 -32.59205 -29.37606 -27.81182 -27.16183 -24.89569 -24.22224 -23.67724 -21.84037 -20.50909 -19.81146 -19.64973 -19.36998 -18.68357 -18.41933 -17.54287 -17.45182 -16.57198 -16.54682 -15.97669 -15.85939 -15.41420 -15.07063 -14.96361 -14.83154 -14.65679 -14.47801 -14.35636 -13.97369 -13.66441 -13.56775 -13.05180 -12.95933 -12.88828 -12.83767 -12.67440 -12.47829 -12.35721 -12.33011 -12.28631 -11.86991 -11.63527 -10.78107 -10.60699 -10.50439 -10.42621 -9.91901 -8.98091 -8.43460 -6.22568 -1.51478 -0.15991 -0.11927 0.20267 0.41925 1.22777 1.32666 1.40469 1.52204 1.57356 1.73002 1.84884 2.12655 2.44653 2.59212 2.99127 3.18242 3.25099 3.38119 3.59882 3.71536 3.75770 3.80504 3.89060 4.18262 4.20835 4.39319 4.55730 4.57086 4.59606 4.64881 4.67842 4.88935 5.01725 5.12089 5.28664 5.65407 5.76085 6.39080 6.47867 6.62001 6.75455 7.21514 7.65326 8.65717 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.003287 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.884924 B = 8516.721770 C = 9261.960951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.122 0.878 4 S -0.107 6.107 5 C -0.079 4.079 6 C -0.061 4.061 7 C -0.052 4.052 8 C -0.037 4.037 9 N 0.027 4.973 10 O -0.181 6.181 11 O -0.163 6.163 12 C -0.058 4.058 13 C -0.072 4.072 14 C 0.471 3.529 15 O -0.558 6.558 16 N -0.463 5.463 17 C -0.355 4.355 18 H 0.069 0.931 19 C 0.051 3.949 20 N -0.904 5.904 21 Si 0.943 3.057 22 H -0.278 1.278 23 H -0.306 1.306 24 H -0.225 1.225 25 C 0.184 3.816 26 C 0.216 3.784 27 N -0.475 5.475 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.169 0.831 34 H 0.161 0.839 35 H 0.274 0.726 36 H 0.155 0.845 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.511 9.039 -15.439 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.224 4.224 3 H 0.140 0.860 4 S 0.126 5.874 5 C -0.190 4.190 6 C -0.082 4.082 7 C -0.073 4.073 8 C -0.120 4.120 9 N 0.544 4.456 10 O -0.393 6.393 11 O -0.380 6.380 12 C -0.078 4.078 13 C -0.093 4.093 14 C 0.260 3.740 15 O -0.440 6.440 16 N -0.186 5.186 17 C -0.481 4.481 18 H 0.087 0.913 19 C -0.155 4.155 20 N -0.540 5.540 21 Si 0.770 3.230 22 H -0.205 1.205 23 H -0.235 1.235 24 H -0.147 1.147 25 C 0.059 3.941 26 C -0.103 4.103 27 N -0.154 5.154 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.195 0.805 32 H 0.196 0.804 33 H 0.186 0.814 34 H 0.179 0.821 35 H 0.083 0.917 36 H 0.172 0.828 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.173 7.923 -15.151 19.403 hybrid contribution -0.774 0.404 0.023 0.873 sum -9.947 8.327 -15.128 19.928 Atomic orbital electron populations 1.22276 0.88453 1.04652 1.05620 1.23606 1.02762 1.02826 0.93181 0.86026 1.86764 1.75820 1.29221 0.95584 1.22549 0.97502 0.98623 1.00368 1.21953 0.94699 0.98383 0.93190 1.21345 1.00376 0.90555 0.94984 1.21468 0.99276 0.96977 0.94242 1.43913 0.99983 1.00524 1.01182 1.94553 1.51642 1.25566 1.67525 1.94532 1.09320 1.76981 1.57198 1.21235 0.93464 0.99568 0.93579 1.21851 1.00515 0.92004 0.94899 1.20321 0.81631 0.87867 0.84142 1.90621 1.49891 1.18944 1.84523 1.43488 1.58456 1.10523 1.06137 1.18622 1.30816 0.96985 1.01720 0.91283 1.25980 0.99151 0.96192 0.94159 1.69874 1.37481 1.07944 1.38731 0.85831 0.79395 0.79976 0.77801 1.20532 1.23479 1.14702 1.19813 0.88399 0.77153 1.08760 1.30465 0.94952 0.93187 0.91683 1.81152 1.10769 1.12400 1.11080 0.91380 0.88393 0.88361 0.80472 0.80434 0.81394 0.82098 0.91671 0.82769 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.83 71.98 0.64 -2.11 16 2 C -0.09 -2.40 2.30 29.85 0.07 -2.33 16 3 H 0.12 2.64 6.70 -2.39 -0.02 2.62 16 4 S -0.11 -2.86 20.34 -56.49 -1.15 -4.01 16 5 C -0.08 -1.39 5.29 22.62 0.12 -1.27 16 6 C -0.06 -0.80 8.89 22.41 0.20 -0.60 16 7 C -0.05 -0.66 9.55 22.25 0.21 -0.44 16 8 C -0.04 -0.61 6.85 36.41 0.25 -0.36 16 9 N 0.03 0.58 4.45 -46.40 -0.21 0.37 16 10 O -0.18 -4.25 18.44 18.89 0.35 -3.90 16 11 O -0.16 -3.63 18.44 18.88 0.35 -3.28 16 12 C -0.06 -0.87 9.55 22.25 0.21 -0.66 16 13 C -0.07 -1.14 9.79 22.41 0.22 -0.92 16 14 C 0.47 18.16 5.10 87.66 0.45 18.61 16 15 O -0.56 -27.45 11.74 -3.07 -0.04 -27.49 16 16 N -0.46 -17.70 2.11 -645.42 -1.36 -19.06 16 17 C -0.36 -17.69 9.67 84.04 0.81 -16.88 16 18 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 19 C 0.05 2.75 4.76 84.93 0.40 3.15 16 20 N -0.90 -53.14 13.96 21.66 0.30 -52.83 16 21 Si 0.94 42.71 25.01 68.60 1.72 44.43 16 22 H -0.28 -13.81 6.38 99.48 0.63 -13.17 16 23 H -0.31 -13.93 7.11 99.48 0.71 -13.23 16 24 H -0.22 -8.23 7.11 99.48 0.71 -7.52 16 25 C 0.18 4.52 5.49 84.57 0.46 4.99 16 26 C 0.22 6.30 15.11 89.44 1.35 7.65 16 27 N -0.47 -16.18 18.54 20.01 0.37 -15.81 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.10 1.38 6.30 -2.39 -0.02 1.36 16 30 H 0.10 1.15 6.88 -2.39 -0.02 1.13 16 31 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.18 1.55 7.60 -2.91 -0.02 1.53 16 33 H 0.17 2.13 7.60 -2.91 -0.02 2.10 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.16 2.26 4.80 -2.39 -0.01 2.25 16 37 H 0.16 3.09 8.03 -2.38 -0.02 3.07 16 Total: -1.00 -75.74 343.35 6.79 -68.95 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.07 Total: 3.81 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.40 Total: 8.83 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -0.90 Total: -87.33 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: 0.66 Total: -34.67 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.72 Total: 44.43 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -1.15 Total: -4.01 kcal Total: -75.74 6.79 -68.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072058590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.853 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds