Wall clock time and date at job start Tue Mar 31 2020 18:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47487 * 2 1 4 4 S 1.81397 * 109.46995 * 120.00517 * 2 1 3 5 5 C 1.76198 * 102.99898 * 295.14756 * 4 2 1 6 6 C 1.38977 * 120.07989 * 95.75879 * 5 4 2 7 7 C 1.38082 * 119.91817 * 180.27543 * 6 5 4 8 8 C 1.38306 * 120.07474 * 359.44645 * 7 6 5 9 9 N 1.48012 * 119.91378 * 180.27591 * 8 7 6 10 10 O 1.21802 * 119.99948 * 0.02562 * 9 8 7 11 11 O 1.21801 * 119.99887 * 180.02562 * 9 8 7 12 12 C 1.38294 * 120.16522 * 0.30000 * 8 7 6 13 13 C 1.38079 * 120.08047 * 359.97438 * 12 8 7 14 14 C 1.50704 * 109.46814 * 240.00161 * 2 1 3 15 15 O 1.21292 * 119.99940 * 264.99858 * 14 2 1 16 16 N 1.34777 * 119.99808 * 85.00476 * 14 2 1 17 17 C 1.37106 * 119.99917 * 179.97438 * 16 14 2 18 18 H 1.07997 * 119.99625 * 21.52992 * 17 16 14 19 19 C 1.38948 * 119.99954 * 201.52647 * 17 16 14 20 20 N 1.31406 * 120.00052 * 18.45949 * 19 17 16 21 21 Si 1.86795 * 119.99992 * 198.45527 * 19 17 16 22 22 H 1.48501 * 109.47132 * 89.99934 * 21 19 17 23 23 H 1.48498 * 109.47321 * 210.00306 * 21 19 17 24 24 H 1.48505 * 109.47029 * 330.00231 * 21 19 17 25 25 C 1.46497 * 120.00401 * 359.97438 * 16 14 2 26 26 C 1.47195 * 109.47087 * 84.13796 * 25 16 14 27 27 N 4.00006 * 125.29531 * 329.51841 * 2 1 3 28 28 H 1.09004 * 109.47160 * 63.72097 * 1 2 3 29 29 H 1.09001 * 109.47550 * 183.72304 * 1 2 3 30 30 H 1.09001 * 109.46943 * 303.72750 * 1 2 3 31 31 H 1.07997 * 120.03906 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.95992 * 179.72790 * 7 6 5 33 33 H 1.08003 * 119.95639 * 179.97438 * 12 8 7 34 34 H 1.07997 * 120.03762 * 179.97438 * 13 12 8 35 35 H 0.96998 * 120.00244 * 179.97438 * 20 19 17 36 36 H 1.08996 * 109.47642 * 204.14416 * 25 16 14 37 37 H 1.09004 * 109.46650 * 324.13907 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1346 -0.8553 1.4810 5 6 1.5788 0.1821 2.7924 6 6 0.3880 -0.1035 3.4495 7 6 -0.0472 0.7150 4.4730 8 6 0.7062 1.8112 4.8518 9 7 0.2393 2.6826 5.9534 10 8 -0.8069 2.4336 6.5252 11 8 0.9013 3.6487 6.2880 12 6 1.8943 2.0955 4.2037 13 6 2.3329 1.2847 3.1756 14 6 2.0322 -0.7104 -1.2305 15 8 2.3207 -1.8873 -1.1761 16 7 2.1610 -0.0380 -2.3915 17 6 2.6185 -0.6841 -3.5108 18 1 2.5479 -1.7595 -3.5802 19 6 3.1728 0.0447 -4.5559 20 7 3.5933 1.2725 -4.3502 21 14 3.3203 -0.7210 -6.2534 22 1 2.0904 -0.4338 -7.0345 23 1 4.4971 -0.1477 -6.9545 24 1 3.4905 -2.1902 -6.1206 25 6 1.8122 1.3834 -2.4573 26 6 2.9567 2.1909 -2.0050 27 7 3.8412 2.8136 -1.6561 28 1 -0.3634 0.4550 -0.9215 29 1 -0.3634 -1.0255 0.0667 30 1 -0.3633 0.5706 0.8547 31 1 -0.1986 -0.9617 3.1569 32 1 -0.9747 0.4962 4.9812 33 1 2.4797 2.9526 4.5020 34 1 3.2607 1.5076 2.6697 35 1 3.9806 1.7812 -5.0797 36 1 1.5633 1.6492 -3.4847 37 1 0.9539 1.5770 -1.8139 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072058591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:13 Heat of formation + Delta-G solvation = 34.779000 kcal Electronic energy + Delta-G solvation = -25452.179121 eV Core-core repulsion = 21518.320199 eV Total energy + Delta-G solvation = -3933.858921 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.42020 -39.57027 -39.21262 -36.81252 -35.99527 -34.51840 -33.25279 -32.28240 -31.83843 -31.59420 -27.66070 -26.88978 -25.63950 -23.83871 -23.40190 -22.80444 -19.77026 -19.65678 -18.89432 -18.19501 -17.86643 -17.77586 -16.89566 -16.48934 -15.75628 -15.37066 -15.09436 -14.90536 -14.34829 -14.23915 -14.15973 -13.83665 -13.33588 -13.25458 -13.12995 -12.55995 -12.03422 -12.00400 -11.96818 -11.81634 -11.78448 -11.69413 -11.43542 -11.38127 -11.37945 -11.24606 -10.73938 -10.65691 -10.55579 -10.49543 -9.77835 -9.48285 -9.41747 -8.88794 -8.23579 -7.78129 -6.66582 -4.21695 -0.60801 0.58758 0.86502 1.08762 1.45305 2.36480 2.94133 2.99979 3.12652 3.16567 3.36363 3.55407 3.78683 3.95686 4.00188 4.11434 4.44111 4.50465 4.55698 4.71590 4.87328 4.89754 5.05067 5.06097 5.18339 5.27233 5.28815 5.35362 5.58623 5.64982 5.65630 5.83918 5.84694 6.08758 6.13964 6.27838 7.30859 7.37681 7.65841 8.06240 8.56604 8.77596 8.96841 9.46564 10.39297 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.002831 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.873654 B = 9886.550972 C =10521.895061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.098 0.902 4 S -0.063 6.063 5 C -0.079 4.079 6 C -0.070 4.070 7 C -0.064 4.064 8 C -0.030 4.030 9 N 0.027 4.973 10 O -0.159 6.159 11 O -0.159 6.159 12 C -0.061 4.061 13 C -0.074 4.074 14 C 0.475 3.525 15 O -0.552 6.552 16 N -0.431 5.431 17 C -0.316 4.316 18 H 0.110 0.890 19 C 0.035 3.965 20 N -0.875 5.875 21 Si 0.932 3.068 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.267 1.267 25 C 0.218 3.782 26 C 0.241 3.759 27 N -0.464 5.464 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.276 0.724 36 H 0.128 0.872 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 1.209 11.032 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.228 4.228 3 H 0.116 0.884 4 S 0.171 5.829 5 C -0.191 4.191 6 C -0.091 4.091 7 C -0.085 4.085 8 C -0.113 4.113 9 N 0.547 4.453 10 O -0.375 6.375 11 O -0.375 6.375 12 C -0.082 4.082 13 C -0.095 4.095 14 C 0.261 3.739 15 O -0.433 6.433 16 N -0.151 5.151 17 C -0.442 4.442 18 H 0.128 0.872 19 C -0.170 4.170 20 N -0.514 5.514 21 Si 0.758 3.242 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.192 1.192 25 C 0.091 3.909 26 C -0.077 4.077 27 N -0.144 5.144 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.780 0.259 10.905 12.843 hybrid contribution -0.802 1.201 -0.821 1.661 sum -7.582 1.460 10.084 12.701 Atomic orbital electron populations 1.22073 0.91373 1.04026 1.02751 1.23660 1.00500 1.02887 0.95792 0.88371 1.86319 1.72795 1.30088 0.93738 1.22765 0.96650 0.98484 1.01179 1.21759 0.94726 0.98978 0.93652 1.21129 0.99872 0.91453 0.96028 1.21284 0.99391 0.96229 0.94424 1.43666 1.00043 1.00613 1.00986 1.94538 1.11471 1.77089 1.54445 1.94553 1.55428 1.18688 1.68842 1.21139 0.93258 1.00078 0.93757 1.21850 1.00127 0.92502 0.95014 1.19073 0.84348 0.87992 0.82496 1.90604 1.53650 1.15638 1.83456 1.43483 1.56884 1.06475 1.08292 1.19748 1.38896 0.94128 0.91462 0.87195 1.25353 0.94728 0.96060 1.00825 1.69772 1.37463 1.10965 1.33157 0.85815 0.77906 0.79593 0.80850 1.19999 1.20948 1.19176 1.18798 0.88107 0.80310 1.03726 1.29212 0.94756 0.93080 0.90684 1.80934 1.09573 1.10921 1.13014 0.90598 0.90269 0.92294 0.82435 0.82520 0.82539 0.82640 0.91345 0.85394 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.79 37.16 0.33 -1.37 16 2 C -0.10 -1.50 2.32 -27.88 -0.06 -1.56 16 3 H 0.10 1.48 6.20 -51.93 -0.32 1.16 16 4 S -0.06 -0.93 20.41 -107.50 -2.19 -3.12 16 5 C -0.08 -0.88 5.16 -39.04 -0.20 -1.08 16 6 C -0.07 -0.63 9.34 -39.36 -0.37 -1.00 16 7 C -0.06 -0.56 9.55 -39.61 -0.38 -0.94 16 8 C -0.03 -0.32 6.85 -79.90 -0.55 -0.87 16 9 N 0.03 0.34 4.45 33.98 0.15 0.49 16 10 O -0.16 -2.02 18.44 -29.46 -0.54 -2.57 16 11 O -0.16 -2.09 18.44 -29.46 -0.54 -2.63 16 12 C -0.06 -0.60 9.55 -39.62 -0.38 -0.98 16 13 C -0.07 -0.77 9.79 -39.37 -0.39 -1.15 16 14 C 0.48 9.81 6.69 -10.98 -0.07 9.74 16 15 O -0.55 -13.42 15.82 5.55 0.09 -13.33 16 16 N -0.43 -9.22 2.59 -117.94 -0.31 -9.53 16 17 C -0.32 -7.57 9.27 -14.93 -0.14 -7.70 16 18 H 0.11 2.79 7.43 -52.49 -0.39 2.40 16 19 C 0.03 0.81 4.91 -17.47 -0.09 0.72 16 20 N -0.88 -20.86 9.44 55.50 0.52 -20.34 16 21 Si 0.93 18.60 29.59 -169.99 -5.03 13.57 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 C 0.22 3.93 4.79 -6.83 -0.03 3.89 16 26 C 0.24 4.93 12.42 -20.74 -0.26 4.67 16 27 N -0.46 -10.32 18.54 42.17 0.78 -9.54 16 28 H 0.08 0.83 6.79 -51.93 -0.35 0.47 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.57 7.29 -51.93 -0.38 0.19 16 31 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.16 1.09 7.60 -52.49 -0.40 0.70 16 33 H 0.16 1.33 7.60 -52.48 -0.40 0.93 16 34 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 36 H 0.13 2.35 6.65 -51.93 -0.35 2.01 16 37 H 0.08 1.11 5.45 -51.93 -0.28 0.83 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -29.89 346.04 -7.71 -37.60 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -3.27 Total: 1.81 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.58 Total: 2.37 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 1.15 Total: -38.92 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -1.00 Total: -18.53 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.19 Total: -3.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.89 -7.71 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072058591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.381 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds