Wall clock time and date at job start Tue Mar 31 2020 19:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48508 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46884 * 299.99192 * 3 2 1 6 6 H 1.48498 * 109.47416 * 59.99834 * 3 2 1 7 7 C 1.37870 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00323 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47615 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47194 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.54526 * 68.37681 * 11 10 9 13 13 O 1.42103 * 110.54539 * 291.62506 * 11 10 9 14 14 N 1.65606 * 104.45002 * 180.02562 * 11 10 9 15 15 C 1.46499 * 119.99884 * 64.99997 * 14 11 10 16 16 C 1.53004 * 109.47007 * 164.99985 * 15 14 11 17 17 O 1.42898 * 109.46768 * 65.00231 * 16 15 14 18 18 C 1.35943 * 116.99672 * 180.02562 * 17 16 15 19 19 C 1.38730 * 120.02201 * 0.27418 * 18 17 16 20 20 C 1.38163 * 120.01370 * 180.23601 * 19 18 17 21 21 C 1.38413 * 120.05645 * 359.48627 * 20 19 18 22 22 F 1.35095 * 119.97983 * 180.23556 * 21 20 19 23 23 C 1.38653 * 120.03719 * 0.25729 * 21 20 19 24 24 F 1.35103 * 120.00856 * 180.02562 * 23 21 20 25 25 C 1.38356 * 119.98592 * 0.02562 * 23 21 20 26 26 H 0.96998 * 120.00147 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46930 * 59.99466 * 9 7 2 28 28 H 1.09000 * 109.47029 * 300.00356 * 9 7 2 29 29 H 1.09006 * 109.46811 * 60.00060 * 10 9 7 30 30 H 1.09000 * 109.47331 * 300.00316 * 10 9 7 31 31 H 0.96998 * 119.99923 * 245.00282 * 14 11 10 32 32 H 1.09003 * 109.47242 * 45.00321 * 15 14 11 33 33 H 1.09000 * 109.46945 * 285.00133 * 15 14 11 34 34 H 1.08996 * 109.46869 * 304.99959 * 16 15 14 35 35 H 1.08993 * 109.46893 * 185.00001 * 16 15 14 36 36 H 1.07995 * 119.99344 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.97507 * 179.77159 * 20 19 18 38 38 H 1.08001 * 120.02872 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6639 -5.4201 -1.2354 13 8 0.6647 -5.4193 1.2386 14 7 2.5205 -6.3927 0.0020 15 6 3.4188 -6.5223 1.1519 16 6 4.1499 -7.8644 1.0793 17 8 5.0005 -7.8819 -0.0688 18 6 5.7264 -9.0114 -0.2818 19 6 5.6170 -10.0822 0.5934 20 6 6.3585 -11.2282 0.3795 21 6 7.2031 -11.3134 -0.7138 22 9 7.9238 -12.4365 -0.9242 23 6 7.3101 -10.2466 -1.5929 24 9 8.1343 -10.3306 -2.6602 25 6 6.5728 -9.0959 -1.3770 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 2.6182 -6.9861 -0.7591 32 1 2.8387 -6.4740 2.0735 33 1 4.1465 -5.7109 1.1377 34 1 3.4211 -8.6714 1.0040 35 1 4.7505 -8.0000 1.9787 36 1 4.9553 -10.0184 1.4445 37 1 6.2757 -12.0600 1.0633 38 1 6.6560 -8.2644 -2.0611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111341126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:30 Heat of formation + Delta-G solvation = -182.672330 kcal Electronic energy + Delta-G solvation = -25421.120046 eV Core-core repulsion = 21027.142541 eV Total energy + Delta-G solvation = -4393.977505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.84940 -48.91516 -40.67198 -37.89905 -36.65921 -35.55769 -35.25392 -33.92246 -31.63570 -31.19261 -30.18111 -28.90752 -25.63336 -24.32945 -23.52459 -22.19317 -21.69656 -19.34222 -18.96637 -18.04049 -17.82493 -17.53580 -16.93157 -16.73778 -16.51020 -16.45163 -15.82373 -15.48814 -15.32944 -15.07510 -14.90722 -14.63098 -14.53256 -14.47134 -13.74919 -13.42290 -13.34087 -12.95854 -12.74453 -12.54467 -12.42229 -11.79060 -11.76448 -11.65680 -11.57192 -11.38385 -11.20641 -11.11600 -10.98792 -10.44477 -10.41761 -9.86684 -9.59844 -9.56632 -9.07903 -8.71700 -8.53156 -6.15079 -4.20648 0.39304 0.52495 0.72772 2.43089 2.83436 3.05836 3.23600 3.31094 3.34269 3.40305 3.90829 4.00689 4.18077 4.25012 4.33937 4.37797 4.48742 4.56178 4.65100 4.72479 4.78813 5.17536 5.20397 5.24139 5.31328 5.35963 5.41242 5.54699 5.58158 5.62116 5.82750 6.09043 6.45290 6.73238 6.99243 7.27255 7.33065 7.78159 8.14693 8.83096 9.44404 10.95937 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019069 B = 0.002118 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.987581 B =13215.186305 C =14025.384752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.588 4.588 11 S 2.594 3.406 12 O -0.965 6.965 13 O -0.968 6.968 14 N -1.127 6.127 15 C 0.119 3.881 16 C 0.049 3.951 17 O -0.301 6.301 18 C 0.157 3.843 19 C -0.192 4.192 20 C -0.082 4.082 21 C 0.025 3.975 22 F -0.131 7.131 23 C 0.111 3.889 24 F -0.122 7.122 25 C -0.163 4.163 26 H 0.265 0.735 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.416 0.584 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.938 -22.383 2.669 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.722 4.722 11 S 2.691 3.309 12 O -0.955 6.955 13 O -0.958 6.958 14 N -0.885 5.885 15 C -0.008 4.008 16 C -0.027 4.027 17 O -0.214 6.214 18 C 0.111 3.889 19 C -0.211 4.211 20 C -0.101 4.101 21 C 0.004 3.996 22 F -0.110 7.110 23 C 0.090 3.910 24 F -0.101 7.101 25 C -0.182 4.182 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.249 0.751 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.869 -22.228 2.691 25.825 hybrid contribution 1.378 0.640 -0.412 1.574 sum 14.247 -21.588 2.278 25.966 Atomic orbital electron populations 1.69962 1.06109 1.27112 1.49640 1.25075 0.94983 0.99584 0.94916 0.86412 0.79918 0.83167 0.77769 1.19654 1.20796 1.20809 1.21036 0.93091 0.89749 1.52037 0.91989 1.18975 0.92707 0.90597 0.98929 1.30435 1.13681 1.17939 1.10145 1.05557 0.74608 0.76593 0.74137 1.93563 1.71528 1.85268 1.45191 1.93538 1.71405 1.85054 1.45758 1.55792 1.52622 1.52782 1.27352 1.21363 0.92797 0.96407 0.90233 1.23218 0.92641 0.99509 0.87339 1.86160 1.54583 1.34183 1.46438 1.18609 0.91034 0.86116 0.93173 1.21249 1.04244 0.93425 1.02210 1.20862 0.94371 0.99126 0.95749 1.17543 0.99333 0.84145 0.98551 1.91525 1.76011 1.48667 1.94766 1.17254 0.93397 0.94233 0.86075 1.91563 1.69314 1.96421 1.52772 1.20228 0.99322 0.98669 1.00022 0.92571 0.94809 0.94793 0.86328 0.85977 0.75057 0.87754 0.90234 0.90402 0.89911 0.83498 0.83280 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 10 C -0.59 -10.55 6.01 37.15 0.22 -10.33 16 11 S 2.59 42.59 5.46 -107.50 -0.59 42.01 16 12 O -0.97 -19.15 18.08 -57.54 -1.04 -20.19 16 13 O -0.97 -18.43 17.49 -57.54 -1.01 -19.44 16 14 N -1.13 -12.66 5.85 -10.61 -0.06 -12.73 16 15 C 0.12 1.00 6.52 -4.04 -0.03 0.97 16 16 C 0.05 0.30 4.93 37.16 0.18 0.48 16 17 O -0.30 -2.42 9.94 -19.56 -0.19 -2.61 16 18 C 0.16 1.19 6.68 -39.24 -0.26 0.93 16 19 C -0.19 -1.12 9.04 -39.43 -0.36 -1.48 16 20 C -0.08 -0.50 10.02 -39.54 -0.40 -0.90 16 21 C 0.02 0.21 7.30 -39.36 -0.29 -0.08 16 22 F -0.13 -1.26 17.18 2.25 0.04 -1.22 16 23 C 0.11 0.99 7.30 -39.38 -0.29 0.70 16 24 F -0.12 -1.24 17.18 2.25 0.04 -1.20 16 25 C -0.16 -1.32 9.96 -39.38 -0.39 -1.71 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 30 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 31 H 0.42 4.16 8.47 -34.47 -0.29 3.87 16 32 H 0.10 0.82 7.69 -51.93 -0.40 0.42 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.40 7.65 -51.93 -0.40 0.00 16 35 H 0.08 0.30 7.67 -51.93 -0.40 -0.10 16 36 H 0.15 0.51 6.29 -52.49 -0.33 0.18 16 37 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 38 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -35.57 353.30 -8.24 -43.81 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.32 Total: -0.49 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.15 Total: -23.77 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.67 Total: -38.11 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -2.24 Total: -42.24 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 42.59 SS G_CDS: -0.59 Total: 42.01 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.57 -8.24 -43.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111341126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.862 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds