Wall clock time and date at job start Tue Mar 31 2020 19:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48508 * 109.46958 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46884 * 299.99192 * 3 2 1 6 6 H 1.48498 * 109.47416 * 59.99834 * 3 2 1 7 7 C 1.37870 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00323 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47615 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47194 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.54526 * 68.37681 * 11 10 9 13 13 O 1.42103 * 110.54539 * 291.62506 * 11 10 9 14 14 N 1.65606 * 104.45002 * 180.02562 * 11 10 9 15 15 C 1.46499 * 119.99884 * 64.99997 * 14 11 10 16 16 C 1.53004 * 109.47007 * 164.99985 * 15 14 11 17 17 O 1.42898 * 109.46768 * 65.00231 * 16 15 14 18 18 C 1.35943 * 116.99672 * 180.02562 * 17 16 15 19 19 C 1.38730 * 120.02201 * 0.27418 * 18 17 16 20 20 C 1.38163 * 120.01370 * 180.23601 * 19 18 17 21 21 C 1.38413 * 120.05645 * 359.48627 * 20 19 18 22 22 F 1.35095 * 119.97983 * 180.23556 * 21 20 19 23 23 C 1.38653 * 120.03719 * 0.25729 * 21 20 19 24 24 F 1.35103 * 120.00856 * 180.02562 * 23 21 20 25 25 C 1.38356 * 119.98592 * 0.02562 * 23 21 20 26 26 H 0.96998 * 120.00147 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46930 * 59.99466 * 9 7 2 28 28 H 1.09000 * 109.47029 * 300.00356 * 9 7 2 29 29 H 1.09006 * 109.46811 * 60.00060 * 10 9 7 30 30 H 1.09000 * 109.47331 * 300.00316 * 10 9 7 31 31 H 0.96998 * 119.99923 * 245.00282 * 14 11 10 32 32 H 1.09003 * 109.47242 * 45.00321 * 15 14 11 33 33 H 1.09000 * 109.46945 * 285.00133 * 15 14 11 34 34 H 1.08996 * 109.46869 * 304.99959 * 16 15 14 35 35 H 1.08993 * 109.46893 * 185.00001 * 16 15 14 36 36 H 1.07995 * 119.99344 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.97507 * 179.77159 * 20 19 18 38 38 H 1.08001 * 120.02872 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6639 -5.4201 -1.2354 13 8 0.6647 -5.4193 1.2386 14 7 2.5205 -6.3927 0.0020 15 6 3.4188 -6.5223 1.1519 16 6 4.1499 -7.8644 1.0793 17 8 5.0005 -7.8819 -0.0688 18 6 5.7264 -9.0114 -0.2818 19 6 5.6170 -10.0822 0.5934 20 6 6.3585 -11.2282 0.3795 21 6 7.2031 -11.3134 -0.7138 22 9 7.9238 -12.4365 -0.9242 23 6 7.3101 -10.2466 -1.5929 24 9 8.1343 -10.3306 -2.6602 25 6 6.5728 -9.0959 -1.3770 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 2.6182 -6.9861 -0.7591 32 1 2.8387 -6.4740 2.0735 33 1 4.1465 -5.7109 1.1377 34 1 3.4211 -8.6714 1.0040 35 1 4.7505 -8.0000 1.9787 36 1 4.9553 -10.0184 1.4445 37 1 6.2757 -12.0600 1.0633 38 1 6.6560 -8.2644 -2.0611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111341126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:29 Heat of formation + Delta-G solvation = -208.834870 kcal Electronic energy + Delta-G solvation = -25422.254539 eV Core-core repulsion = 21027.142541 eV Total energy + Delta-G solvation = -4395.111998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.52243 -49.59203 -41.19613 -38.47250 -38.09642 -36.97977 -36.11478 -35.86625 -33.09224 -32.16961 -30.78011 -29.52797 -27.56353 -24.90485 -24.09608 -23.56585 -22.76190 -20.36373 -19.74621 -19.08425 -18.66639 -18.43223 -18.17474 -17.63112 -17.37766 -17.16501 -16.99940 -16.63857 -16.49552 -16.03983 -16.02202 -15.53448 -15.47355 -15.01724 -14.97086 -14.54512 -14.34589 -13.93540 -13.72380 -13.66584 -13.34441 -13.16531 -13.06089 -13.01072 -12.93698 -12.75017 -12.62090 -12.22016 -12.09069 -11.99029 -11.79512 -11.67575 -11.14987 -10.64128 -10.33543 -10.14386 -9.27247 -8.24892 -6.38269 -0.62704 -0.15326 -0.01224 1.41913 1.42271 1.55388 1.83918 1.98438 2.31062 2.38899 2.85384 2.86172 3.08833 3.31116 3.33895 3.51259 3.78891 3.81178 4.01546 4.02499 4.15066 4.17486 4.20979 4.40050 4.55924 4.71458 4.78078 4.81009 4.82160 4.94432 4.97861 5.06568 5.31269 5.32730 5.53372 5.70694 6.08426 6.13177 6.25007 6.76116 7.31904 8.87406 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019069 B = 0.002118 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.987581 B =13215.186305 C =14025.384752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.536 4.536 8 H 0.075 0.925 9 C 0.018 3.982 10 C -0.590 4.590 11 S 2.626 3.374 12 O -1.003 7.003 13 O -0.993 6.993 14 N -1.109 6.109 15 C 0.102 3.898 16 C 0.046 3.954 17 O -0.315 6.315 18 C 0.153 3.847 19 C -0.180 4.180 20 C -0.073 4.073 21 C 0.006 3.994 22 F -0.143 7.143 23 C 0.090 3.910 24 F -0.137 7.137 25 C -0.173 4.173 26 H 0.267 0.733 27 H 0.004 0.996 28 H 0.010 0.990 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.425 0.575 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.503 -23.100 4.183 28.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.094 0.906 9 C -0.021 4.021 10 C -0.722 4.722 11 S 2.722 3.278 12 O -0.993 6.993 13 O -0.983 6.983 14 N -0.872 5.872 15 C -0.023 4.023 16 C -0.030 4.030 17 O -0.229 6.229 18 C 0.106 3.894 19 C -0.199 4.199 20 C -0.092 4.092 21 C -0.014 4.014 22 F -0.122 7.122 23 C 0.070 3.930 24 F -0.116 7.116 25 C -0.192 4.192 26 H 0.075 0.925 27 H 0.023 0.977 28 H 0.028 0.972 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.261 0.739 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.197 0.803 37 H 0.194 0.806 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.450 -22.942 4.202 27.437 hybrid contribution 0.895 0.788 -0.840 1.459 sum 15.345 -22.154 3.362 27.158 Atomic orbital electron populations 1.70104 1.08015 1.28183 1.51103 1.26108 0.95858 1.03857 0.94557 0.85281 0.79186 0.78164 0.77709 1.17945 1.20619 1.20364 1.21560 0.93977 0.90854 1.51100 0.90637 1.18832 0.93691 0.93141 0.96406 1.30349 1.12764 1.16670 1.12400 1.04280 0.74571 0.76301 0.72639 1.93506 1.73211 1.85769 1.46831 1.93502 1.72608 1.85400 1.46805 1.55282 1.52193 1.50870 1.28841 1.21766 0.92772 0.98632 0.89120 1.23386 0.93136 0.98352 0.88099 1.86130 1.54883 1.34464 1.47385 1.18690 0.90857 0.86593 0.93254 1.21586 1.03731 0.92266 1.02304 1.21186 0.92970 1.00043 0.94955 1.17855 1.00236 0.83741 0.99552 1.91490 1.76492 1.49233 1.94965 1.17477 0.94095 0.95112 0.86287 1.91515 1.69915 1.96563 1.53587 1.20284 0.99749 0.98453 1.00715 0.92462 0.97748 0.97208 0.83609 0.84274 0.73900 0.86905 0.88995 0.88925 0.86525 0.80347 0.80570 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.29 21.44 0.28 -55.90 16 2 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 3 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -29.02 9.11 25.60 0.23 -28.79 16 8 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.02 0.92 4.98 29.85 0.15 1.07 16 10 C -0.59 -20.60 6.01 71.98 0.43 -20.17 16 11 S 2.63 84.19 5.46 -56.49 -0.31 83.89 16 12 O -1.00 -39.91 18.08 -127.65 -2.31 -42.21 16 13 O -0.99 -37.17 17.49 -127.65 -2.23 -39.41 16 14 N -1.11 -22.22 5.85 -187.48 -1.10 -23.32 16 15 C 0.10 1.36 6.52 86.38 0.56 1.92 16 16 C 0.05 0.37 4.93 71.98 0.36 0.72 16 17 O -0.32 -4.06 9.94 -92.91 -0.92 -4.98 16 18 C 0.15 1.92 6.68 22.49 0.15 2.07 16 19 C -0.18 -1.43 9.04 22.37 0.20 -1.23 16 20 C -0.07 -0.68 10.02 22.29 0.22 -0.46 16 21 C 0.01 0.10 7.30 22.41 0.16 0.26 16 22 F -0.14 -2.71 17.18 44.97 0.77 -1.93 16 23 C 0.09 1.61 7.30 22.40 0.16 1.77 16 24 F -0.14 -2.90 17.18 44.97 0.77 -2.13 16 25 C -0.17 -2.66 9.96 22.40 0.22 -2.44 16 26 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 27 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.15 4.21 8.14 -2.39 -0.02 4.19 16 30 H 0.14 4.34 8.14 -2.39 -0.02 4.32 16 31 H 0.42 7.46 8.47 -96.74 -0.82 6.64 16 32 H 0.11 1.38 7.69 -2.39 -0.02 1.36 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.09 0.50 7.65 -2.39 -0.02 0.48 16 35 H 0.12 0.21 7.67 -2.39 -0.02 0.20 16 36 H 0.18 0.25 6.29 -2.91 -0.02 0.23 16 37 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -79.41 353.30 0.60 -78.82 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.29 Total: 7.54 kcal Atomic # 6 Polarization: -48.43 SS G_CDS: 3.32 Total: -45.11 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -0.81 Total: -79.22 kcal Atomic # 8 Polarization: -81.14 SS G_CDS: -5.46 Total: -86.60 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 1.55 Total: -4.06 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 84.19 SS G_CDS: -0.31 Total: 83.89 kcal Total: -79.41 0.60 -78.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111341126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.018 kcal (2) G-P(sol) polarization free energy of solvation -79.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds