Wall clock time and date at job start Tue Mar 31 2020 19:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99909 * 2 1 4 4 H 1.48503 * 109.46855 * 270.00153 * 3 2 1 5 5 H 1.48497 * 109.47046 * 29.99570 * 3 2 1 6 6 H 1.48495 * 109.47117 * 149.99805 * 3 2 1 7 7 C 1.37872 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00035 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99918 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.34970 * 125.97506 * 125.01770 * 10 9 7 12 12 C 1.35233 * 107.86046 * 179.68822 * 11 10 9 13 13 C 1.40417 * 107.86622 * 0.43372 * 12 11 10 14 14 N 1.40156 * 125.97257 * 179.82855 * 13 12 11 15 15 C 1.34784 * 120.00115 * 359.70985 * 14 13 12 16 16 O 1.21295 * 119.99717 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00087 * 180.02562 * 15 14 13 18 18 O 1.42896 * 109.47401 * 180.02562 * 17 15 14 19 19 C 1.35922 * 117.00471 * 179.97438 * 18 17 15 20 20 C 1.38710 * 120.05731 * 0.02562 * 19 18 17 21 21 C 1.38151 * 119.95740 * 180.02562 * 20 19 18 22 22 C 1.38274 * 120.07719 * 0.02562 * 21 20 19 23 23 C 1.38245 * 120.12107 * 359.97295 * 22 21 20 24 24 C 1.38260 * 120.04016 * 0.02562 * 23 22 21 25 25 Cl 1.73598 * 120.03731 * 179.97438 * 24 23 22 26 26 N 1.31212 * 108.05207 * 359.55777 * 13 12 11 27 27 H 0.97000 * 119.99917 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47457 * 60.00001 * 9 7 2 29 29 H 1.08999 * 109.47320 * 299.99830 * 9 7 2 30 30 H 1.08004 * 126.07102 * 359.96396 * 11 10 9 31 31 H 1.07997 * 126.07203 * 180.27318 * 12 11 10 32 32 H 0.96996 * 120.00179 * 179.71111 * 14 13 12 33 33 H 1.08999 * 109.47295 * 59.99820 * 17 15 14 34 34 H 1.09000 * 109.47238 * 300.00166 * 17 15 14 35 35 H 1.08002 * 120.02180 * 359.97438 * 20 19 18 36 36 H 1.07998 * 119.96056 * 180.02562 * 21 20 19 37 37 H 1.08006 * 119.94300 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.98239 * 179.74871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.8555 -3.1136 -0.8933 12 6 5.0617 -4.4040 -0.5452 13 6 4.2953 -4.6686 0.6012 14 7 4.2246 -5.8930 1.2797 15 6 4.9306 -6.9516 0.8351 16 8 5.6276 -6.8444 -0.1518 17 6 4.8542 -8.2682 1.5643 18 8 5.6849 -9.2264 0.9057 19 6 5.7300 -10.4752 1.4405 20 6 4.9896 -10.7722 2.5752 21 6 5.0374 -12.0420 3.1173 22 6 5.8228 -13.0169 2.5304 23 6 6.5619 -12.7245 1.3993 24 6 6.5178 -11.4553 0.8526 25 17 7.4465 -11.0880 -0.5673 26 7 3.6613 -3.5678 0.9295 27 1 -0.4850 0.8401 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8888 30 1 5.3003 -2.6031 -1.7348 31 1 5.7004 -5.1070 -1.0592 32 1 3.6676 -5.9786 2.0691 33 1 3.8233 -8.6221 1.5681 34 1 5.1966 -8.1355 2.5906 35 1 4.3769 -10.0110 3.0352 36 1 4.4607 -12.2734 4.0006 37 1 5.8589 -14.0088 2.9562 38 1 7.1778 -13.4866 0.9450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117711273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:34 Heat of formation + Delta-G solvation = 44.419499 kcal Electronic energy + Delta-G solvation = -24418.851683 eV Core-core repulsion = 20483.367098 eV Total energy + Delta-G solvation = -3935.484584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00599 -40.55230 -39.30281 -37.71484 -36.59864 -34.90952 -33.35874 -31.57972 -31.26976 -30.67200 -29.51602 -28.73780 -26.97203 -23.59330 -22.95668 -22.53993 -21.64420 -20.28339 -19.76262 -18.85057 -17.42279 -17.07522 -16.79308 -16.77178 -16.47624 -16.14786 -15.38919 -15.02687 -14.99384 -14.44773 -14.34602 -14.25962 -13.77368 -13.35568 -13.23126 -13.01610 -12.57427 -12.39368 -12.34638 -12.20524 -11.83692 -11.67156 -11.56092 -11.19624 -11.05221 -10.80580 -10.71238 -10.14153 -10.05175 -9.73382 -9.57057 -9.34668 -8.79494 -8.63064 -8.27562 -7.61313 -6.26374 -4.28990 0.68836 0.85743 1.88354 2.06952 2.11822 2.76336 3.03555 3.14030 3.16971 3.20406 3.23033 3.56513 3.69610 4.20304 4.23721 4.29038 4.49095 4.54268 4.64064 4.70210 4.80084 4.98167 5.01203 5.24120 5.37906 5.60018 5.62033 5.72743 5.94122 6.06655 6.13054 6.31979 6.37343 6.47657 6.61705 6.77565 7.19076 7.23477 7.46633 7.75292 8.05084 8.29580 8.47899 8.82844 9.28371 10.86227 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.029193 B = 0.001934 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.894277 B =14476.526343 C =15179.815535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.317 5.317 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.260 3.740 14 N -0.626 5.626 15 C 0.521 3.479 16 O -0.489 6.489 17 C 0.045 3.955 18 O -0.275 6.275 19 C 0.141 3.859 20 C -0.201 4.201 21 C -0.074 4.074 22 C -0.148 4.148 23 C -0.073 4.073 24 C -0.068 4.068 25 Cl -0.050 7.050 26 N -0.294 5.294 27 H 0.268 0.732 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.413 0.587 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.436 -24.629 6.415 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.099 5.099 11 C -0.096 4.096 12 C -0.314 4.314 13 C 0.007 3.993 14 N -0.276 5.276 15 C 0.304 3.696 16 O -0.360 6.360 17 C -0.034 4.034 18 O -0.187 6.187 19 C 0.094 3.906 20 C -0.220 4.220 21 C -0.093 4.093 22 C -0.166 4.166 23 C -0.092 4.092 24 C -0.095 4.095 25 Cl -0.021 7.021 26 N -0.125 5.125 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.188 0.812 31 H 0.180 0.820 32 H 0.249 0.751 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.124 -23.651 6.203 27.292 hybrid contribution 0.350 0.636 -0.073 0.729 sum 12.473 -23.016 6.130 26.887 Atomic orbital electron populations 1.69872 1.06152 1.27335 1.49053 1.24836 0.94884 0.98821 0.94235 0.86903 0.80421 0.83808 0.78950 1.19686 1.20513 1.18865 1.21093 0.87738 0.95717 1.52789 0.89640 1.20072 0.97503 0.72884 0.98281 1.48637 1.32412 1.10271 1.18587 1.22574 0.95744 0.94662 0.96661 1.21560 1.11241 0.96960 1.01682 1.19002 0.99185 0.86348 0.94770 1.42145 1.47368 1.07368 1.30693 1.19822 0.80338 0.84114 0.85283 1.90719 1.37815 1.82870 1.24602 1.22422 0.96669 0.87385 0.96904 1.86239 1.63748 1.17135 1.51578 1.18730 0.94909 0.84481 0.92515 1.21294 1.03826 0.99373 0.97472 1.21070 0.97039 0.92117 0.99030 1.21057 0.98752 1.00223 0.96589 1.20963 0.98677 0.93910 0.95631 1.20248 1.01013 0.94011 0.94255 1.98399 1.71478 1.94864 1.37381 1.77387 1.23608 0.95518 1.15956 0.92150 0.93952 0.93250 0.81244 0.82043 0.75139 0.88179 0.88257 0.84330 0.84964 0.84903 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 19.90 27.47 -169.99 -4.67 15.23 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 7 C -0.54 -14.90 9.79 -34.44 -0.34 -15.24 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 9 C 0.23 5.40 5.33 -5.19 -0.03 5.37 16 10 N -0.32 -7.05 3.67 -62.56 -0.23 -7.28 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.42 9.61 -39.83 -0.38 -5.80 16 13 C 0.26 4.99 8.11 -154.39 -1.25 3.74 16 14 N -0.63 -8.85 5.45 -11.13 -0.06 -8.91 16 15 C 0.52 7.03 7.87 -10.98 -0.09 6.94 16 16 O -0.49 -8.60 13.63 -14.36 -0.20 -8.80 16 17 C 0.05 0.40 5.22 36.00 0.19 0.59 16 18 O -0.28 -3.22 9.13 -39.40 -0.36 -3.58 16 19 C 0.14 1.39 6.68 -39.20 -0.26 1.12 16 20 C -0.20 -1.42 9.04 -39.44 -0.36 -1.77 16 21 C -0.07 -0.43 10.04 -39.60 -0.40 -0.83 16 22 C -0.15 -0.86 10.04 -39.57 -0.40 -1.26 16 23 C -0.07 -0.53 9.83 -39.57 -0.39 -0.92 16 24 C -0.07 -0.67 6.33 -39.36 -0.25 -0.92 16 25 Cl -0.05 -0.56 28.50 -51.86 -1.48 -2.04 16 26 N -0.29 -6.53 12.42 31.44 0.39 -6.14 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 29 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 30 H 0.17 2.54 8.06 -52.48 -0.42 2.11 16 31 H 0.16 3.04 5.91 -52.49 -0.31 2.72 16 32 H 0.41 4.39 8.82 -40.82 -0.36 4.03 16 33 H 0.10 0.61 7.66 -51.93 -0.40 0.21 16 34 H 0.10 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.14 0.64 6.30 -52.49 -0.33 0.31 16 36 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 349.43 15.07 5.27 5.27 Total: -1.00 -35.69 349.43 -8.65 -44.33 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.84 Total: 3.60 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -4.24 Total: -6.15 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.87 Total: -47.86 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.56 Total: -12.38 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.67 Total: 15.23 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.69 -8.65 -44.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117711273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.754 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds