Wall clock time and date at job start Tue Mar 31 2020 18:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34233 * 117.00109 * 2 1 4 4 O 1.20830 * 119.99649 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99892 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47040 * 180.02562 * 5 3 2 7 7 C 1.36835 * 119.99882 * 87.62863 * 6 5 3 8 8 H 1.07996 * 120.00589 * 36.34997 * 7 6 5 9 9 C 1.39053 * 119.99932 * 216.33926 * 7 6 5 10 10 N 1.31373 * 119.99720 * 23.77130 * 9 7 6 11 11 Si 1.86792 * 120.00433 * 203.76726 * 9 7 6 12 12 H 1.48498 * 109.47346 * 90.00143 * 11 9 7 13 13 H 1.48498 * 109.47541 * 210.00367 * 11 9 7 14 14 H 1.48509 * 109.47117 * 330.00571 * 11 9 7 15 15 C 1.34780 * 119.99309 * 267.63058 * 6 5 3 16 16 O 1.21671 * 119.99441 * 187.25035 * 15 6 5 17 17 C 1.47054 * 120.00463 * 7.25511 * 15 6 5 18 18 C 1.38252 * 126.76429 * 187.61806 * 17 15 6 19 19 C 1.40831 * 105.28150 * 179.91322 * 18 17 15 20 20 C 1.47960 * 126.23201 * 180.14368 * 19 18 17 21 21 C 1.34715 * 125.27032 * 179.97438 * 20 19 18 22 22 C 1.38033 * 114.70478 * 179.79544 * 21 20 19 23 23 C 1.33564 * 115.05721 * 0.50149 * 22 21 20 24 24 S 1.75860 * 109.75997 * 359.72902 * 23 22 21 25 25 N 1.31801 * 107.54043 * 0.34828 * 19 18 17 26 26 N 1.28422 * 110.79140 * 359.77695 * 25 19 18 27 27 H 0.96996 * 125.04094 * 180.02562 * 26 25 19 28 28 H 1.08999 * 109.47341 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47459 * 300.00486 * 1 2 3 30 30 H 1.09010 * 109.46741 * 60.00375 * 1 2 3 31 31 H 1.08996 * 109.47293 * 59.99415 * 5 3 2 32 32 H 1.09007 * 109.46832 * 299.99375 * 5 3 2 33 33 H 0.96996 * 119.99960 * 184.94548 * 10 9 7 34 34 H 1.08003 * 127.35736 * 0.02562 * 18 17 15 35 35 H 1.07994 * 122.64775 * 359.97438 * 21 20 19 36 36 H 1.08002 * 122.47123 * 180.22362 * 22 21 20 37 37 H 1.08001 * 125.11947 * 179.77602 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1283 3.3494 1.1853 8 1 4.5172 2.8354 2.0519 9 6 3.7767 4.6919 1.2730 10 7 2.9038 5.1985 0.4321 11 14 4.5455 5.7750 2.5864 12 1 5.7876 6.3914 2.0551 13 1 3.5878 6.8430 2.9703 14 1 4.8723 4.9514 3.7783 15 6 4.2196 3.3124 -1.1650 16 8 4.6901 4.4345 -1.1633 17 6 3.9103 2.6468 -2.4392 18 6 4.2285 3.0974 -3.7069 19 6 3.7254 2.1189 -4.5859 20 6 3.8169 2.1397 -6.0625 21 6 3.3285 1.1917 -6.8856 22 6 3.5319 1.4336 -8.2293 23 6 4.1895 2.5624 -8.5075 24 16 4.5870 3.4024 -7.0146 25 7 3.1542 1.1834 -3.8540 26 7 3.2462 1.4630 -2.6040 27 1 2.8966 0.9155 -1.8836 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.9565 0.7805 -0.8890 32 1 3.9557 0.7809 0.8909 33 1 2.7119 6.1492 0.4463 34 1 4.7528 4.0051 -3.9673 35 1 2.8155 0.3133 -6.5230 36 1 3.1889 0.7577 -8.9986 37 1 4.4388 2.9077 -9.5001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120615258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:35 Heat of formation + Delta-G solvation = 13.768424 kcal Electronic energy + Delta-G solvation = -26558.539873 eV Core-core repulsion = 22623.769864 eV Total energy + Delta-G solvation = -3934.770008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.76031 -41.63191 -40.06270 -38.56923 -37.61343 -36.37716 -34.44953 -33.47760 -31.88337 -30.49671 -29.60726 -27.92739 -27.07072 -25.48511 -24.04740 -22.66216 -22.45333 -21.75377 -19.91311 -19.89692 -18.88815 -18.53305 -18.23428 -17.57840 -17.27865 -16.95700 -16.79319 -16.54866 -16.09457 -15.92426 -15.13956 -14.93104 -14.67494 -14.42354 -14.30825 -14.12344 -13.98557 -13.55727 -13.42003 -13.20870 -13.10205 -13.03871 -12.84398 -12.74423 -12.12599 -12.07039 -11.84468 -11.70435 -11.64068 -11.13789 -11.03919 -10.64705 -10.24148 -9.54205 -9.41624 -9.18737 -8.31314 -6.08664 -0.23972 0.24677 0.57013 0.97448 1.11836 1.38138 1.42045 1.44447 1.52443 1.54004 1.73246 2.13263 2.22741 2.55213 2.70278 3.22758 3.28912 3.57949 3.58696 3.84769 3.90458 4.20950 4.24932 4.26525 4.29119 4.30181 4.55550 4.64654 4.69223 4.75792 5.12062 5.21450 5.23717 5.37568 5.45188 5.55383 5.67521 5.95911 6.64305 6.70778 6.73675 6.91675 7.33585 7.91021 8.74716 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.004018 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.270926 B = 6967.180668 C = 8705.673228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.410 3.590 4 O -0.495 6.495 5 C 0.084 3.916 6 N -0.432 5.432 7 C -0.369 4.369 8 H 0.109 0.891 9 C 0.024 3.976 10 N -0.842 5.842 11 Si 0.975 3.025 12 H -0.285 1.285 13 H -0.289 1.289 14 H -0.245 1.245 15 C 0.533 3.467 16 O -0.553 6.553 17 C -0.007 4.007 18 C -0.177 4.177 19 C 0.095 3.905 20 C -0.138 4.138 21 C -0.111 4.111 22 C -0.139 4.139 23 C -0.199 4.199 24 S 0.123 5.877 25 N -0.272 5.272 26 N -0.384 5.384 27 H 0.445 0.555 28 H 0.144 0.856 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.120 0.880 32 H 0.159 0.841 33 H 0.260 0.740 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.174 0.826 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -12.637 -11.914 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.250 3.750 4 O -0.380 6.380 5 C -0.042 4.042 6 N -0.152 5.152 7 C -0.495 4.495 8 H 0.127 0.873 9 C -0.186 4.186 10 N -0.475 5.475 11 Si 0.799 3.201 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.169 1.169 15 C 0.322 3.678 16 O -0.431 6.431 17 C -0.135 4.135 18 C -0.206 4.206 19 C -0.064 4.064 20 C -0.257 4.257 21 C -0.144 4.144 22 C -0.169 4.169 23 C -0.335 4.335 24 S 0.387 5.613 25 N -0.106 5.106 26 N -0.109 5.109 27 H 0.299 0.701 28 H 0.162 0.838 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.176 0.824 33 H 0.070 0.930 34 H 0.178 0.822 35 H 0.165 0.835 36 H 0.191 0.809 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.278 -11.254 -11.573 16.145 hybrid contribution -0.837 0.245 0.959 1.297 sum -1.115 -11.010 -10.613 15.333 Atomic orbital electron populations 1.23545 0.75169 1.05924 1.01943 1.86529 1.24794 1.32128 1.84236 1.25279 0.93734 0.82051 0.73972 1.90848 1.66948 1.37355 1.42818 1.22063 0.86420 0.87754 1.07935 1.43150 1.57537 1.08906 1.05612 1.19568 1.44973 0.95352 0.89640 0.87312 1.26143 0.93106 1.00053 0.99298 1.70119 1.26067 1.12908 1.38448 0.85241 0.77743 0.78299 0.78840 1.21116 1.21464 1.16867 1.16944 0.82967 0.86251 0.81678 1.90617 1.47118 1.19498 1.85874 1.22206 1.03656 0.90478 0.97200 1.22118 1.06962 1.01930 0.89633 1.19575 1.01743 0.92932 0.92106 1.21838 1.10172 1.02160 0.91482 1.20609 1.01001 0.99681 0.93148 1.20326 1.01798 0.98876 0.95867 1.26197 1.05853 0.99505 1.01968 1.84392 1.55876 1.23596 0.97461 1.73220 1.21735 1.25528 0.90088 1.44712 1.42273 1.17618 1.06322 0.70116 0.83772 0.92535 0.93033 0.86314 0.82359 0.93022 0.82212 0.83489 0.80867 0.78286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.85 16 2 O -0.36 -10.56 10.56 -51.44 -0.54 -11.11 16 3 C 0.41 15.62 5.99 71.24 0.43 16.04 16 4 O -0.49 -24.22 16.16 21.95 0.35 -23.86 16 5 C 0.08 3.06 5.47 85.63 0.47 3.52 16 6 N -0.43 -21.13 2.05 -643.73 -1.32 -22.45 16 7 C -0.37 -19.50 9.25 84.11 0.78 -18.72 16 8 H 0.11 5.18 7.94 -2.91 -0.02 5.16 16 9 C 0.02 1.32 4.20 84.96 0.36 1.68 16 10 N -0.84 -51.73 11.65 21.68 0.25 -51.48 16 11 Si 0.97 44.51 29.62 68.60 2.03 46.54 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 15 C 0.53 28.28 6.80 86.55 0.59 28.87 16 16 O -0.55 -33.71 14.56 -4.26 -0.06 -33.77 16 17 C -0.01 -0.34 6.68 40.70 0.27 -0.06 16 18 C -0.18 -7.41 10.64 22.91 0.24 -7.17 16 19 C 0.09 3.48 7.08 42.36 0.30 3.78 16 20 C -0.14 -4.13 6.44 24.04 0.15 -3.97 16 21 C -0.11 -2.70 10.05 21.41 0.22 -2.48 16 22 C -0.14 -2.49 10.16 21.16 0.22 -2.27 16 23 C -0.20 -3.42 11.22 66.76 0.75 -2.67 16 24 S 0.12 3.01 23.12 -56.49 -1.31 1.71 16 25 N -0.27 -10.02 12.13 -48.42 -0.59 -10.60 16 26 N -0.38 -14.81 5.80 -48.10 -0.28 -15.09 16 27 H 0.44 15.51 3.74 -220.02 -0.82 14.69 16 28 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 30 H 0.05 1.33 8.13 -2.38 -0.02 1.31 16 31 H 0.12 3.71 5.05 -2.39 -0.01 3.70 16 32 H 0.16 4.54 8.06 -2.38 -0.02 4.52 16 33 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 34 H 0.16 6.54 8.06 -2.91 -0.02 6.51 16 35 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -79.54 341.27 4.83 -74.71 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.32 Total: 27.01 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 5.97 Total: 18.40 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -1.93 Total: -99.62 kcal Atomic # 8 Polarization: -68.49 SS G_CDS: -0.25 Total: -68.74 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.31 Total: 1.71 kcal Total: -79.54 4.83 -74.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120615258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.477 kcal (2) G-P(sol) polarization free energy of solvation -79.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds