Wall clock time and date at job start Tue Mar 31 2020 18:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00088 * 2 1 4 4 C 1.50703 * 109.47307 * 180.02562 * 3 2 1 5 5 N 1.30170 * 121.06811 * 90.01780 * 4 3 2 6 6 S 1.69947 * 105.74617 * 179.97438 * 5 4 3 7 7 C 1.72303 * 94.56650 * 0.02562 * 6 5 4 8 8 N 1.38682 * 127.50089 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00077 * 0.02562 * 8 7 6 10 10 O 1.21596 * 119.99968 * 0.02562 * 9 8 7 11 11 C 1.47483 * 119.99943 * 179.97438 * 9 8 7 12 12 C 1.39686 * 120.19868 * 0.02562 * 11 9 8 13 13 C 1.37825 * 119.91748 * 180.27240 * 12 11 9 14 14 C 1.38577 * 120.32013 * 359.46471 * 13 12 11 15 15 C 1.38022 * 120.41106 * 0.56124 * 14 13 12 16 16 C 1.38834 * 120.07556 * 359.69775 * 15 14 13 17 17 O 1.35513 * 120.16384 * 180.02562 * 16 15 14 18 18 C 1.34810 * 117.00316 * 354.39022 * 17 16 15 19 19 H 1.08007 * 119.99560 * 5.05669 * 18 17 16 20 20 C 1.38695 * 120.00439 * 185.05677 * 18 17 16 21 21 N 1.31513 * 120.00528 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99692 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47656 * 89.99781 * 22 20 18 24 24 H 1.48510 * 109.47077 * 209.99994 * 22 20 18 25 25 H 1.48503 * 109.47328 * 329.99436 * 22 20 18 26 26 N 1.31231 * 121.06412 * 270.29385 * 4 3 2 27 27 H 1.08998 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46943 * 300.00594 * 1 2 3 29 29 H 1.08999 * 109.46968 * 59.99936 * 1 2 3 30 30 H 1.08998 * 109.47613 * 59.99775 * 3 2 1 31 31 H 1.08999 * 109.47355 * 299.99372 * 3 2 1 32 32 H 0.97001 * 119.99527 * 180.02562 * 8 7 6 33 33 H 1.08001 * 120.04344 * 359.97438 * 12 11 9 34 34 H 1.07994 * 119.83382 * 179.72601 * 13 12 11 35 35 H 1.08001 * 119.79392 * 180.29645 * 14 13 12 36 36 H 1.07998 * 119.96759 * 179.72028 * 15 14 13 37 37 H 0.97000 * 120.00748 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.1818 1.1340 -1.1159 6 16 5.8160 1.0051 -0.6675 7 6 5.4960 1.0291 1.0254 8 7 6.4169 0.9555 2.0597 9 6 7.7323 0.8521 1.7849 10 8 8.1117 0.8239 0.6300 11 6 8.7116 0.7744 2.8849 12 6 8.2803 0.8070 4.2131 13 6 9.2009 0.7396 5.2366 14 6 10.5532 0.6284 4.9550 15 6 10.9942 0.5955 3.6475 16 6 10.0819 0.6676 2.6035 17 8 10.5128 0.6350 1.3192 18 6 11.8461 0.6487 1.1203 19 1 12.5184 0.6019 1.9644 20 6 12.3545 0.7230 -0.1679 21 7 13.6552 0.7370 -0.3619 22 14 11.1917 0.8047 -1.6276 23 1 10.8814 2.2242 -1.9346 24 1 11.8335 0.1718 -2.8078 25 1 9.9356 0.0830 -1.3009 26 7 4.1876 1.1270 1.1232 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 6.1142 0.9784 2.9810 33 1 7.2272 0.8897 4.4379 34 1 8.8664 0.7694 6.2630 35 1 11.2669 0.5714 5.7636 36 1 12.0501 0.5133 3.4362 37 1 14.0108 0.7893 -1.2628 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130231324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:28 Heat of formation + Delta-G solvation = -5.763193 kcal Electronic energy + Delta-G solvation = -25371.520524 eV Core-core repulsion = 21435.903561 eV Total energy + Delta-G solvation = -3935.616963 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67601 -40.05514 -38.82715 -37.82823 -36.80508 -35.10704 -32.65238 -32.00535 -30.64565 -29.44312 -29.18511 -26.38456 -25.64673 -24.82595 -23.11926 -21.59461 -21.28981 -20.29571 -18.74021 -18.15819 -17.82597 -17.32896 -16.90672 -16.60048 -15.75425 -15.71235 -15.67791 -15.09580 -14.77973 -14.49220 -14.37282 -13.91461 -13.77338 -13.35686 -13.27304 -12.72857 -12.58813 -12.34175 -11.93275 -11.78180 -11.66125 -11.63442 -11.42912 -11.34392 -11.04267 -10.85434 -10.21399 -10.05813 -9.99753 -9.69332 -9.61448 -9.49716 -9.05486 -8.79897 -8.55782 -7.71333 -6.64694 -4.30038 0.46212 0.99750 1.26335 1.80551 1.98274 2.28539 2.49439 3.10736 3.22530 3.28590 3.53152 3.68432 4.19751 4.21076 4.24269 4.46852 4.81544 4.89480 4.91386 4.94893 5.08469 5.09527 5.14358 5.37192 5.40104 5.44499 5.60322 5.70607 5.80911 6.03648 6.12715 6.30776 6.55749 6.73833 6.77099 6.92670 7.01742 7.26213 7.50140 7.62142 7.75085 8.04844 8.68536 9.27260 10.39311 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.003541 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.132347 B = 7905.579405 C = 9823.323870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.155 3.845 4 C 0.284 3.716 5 N -0.507 5.507 6 S 0.339 5.661 7 C 0.293 3.707 8 N -0.613 5.613 9 C 0.558 3.442 10 O -0.477 6.477 11 C -0.232 4.232 12 C -0.035 4.035 13 C -0.217 4.217 14 C -0.043 4.043 15 C -0.221 4.221 16 C 0.204 3.796 17 O -0.160 6.160 18 C -0.396 4.396 19 H 0.112 0.888 20 C 0.074 3.926 21 N -0.859 5.859 22 Si 0.896 3.104 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.236 1.236 26 N -0.552 5.552 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.423 0.577 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.467 1.335 6.494 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.074 3.926 4 C -0.007 4.007 5 N -0.344 5.344 6 S 0.476 5.524 7 C -0.083 4.083 8 N -0.265 5.265 9 C 0.350 3.650 10 O -0.348 6.348 11 C -0.237 4.237 12 C -0.054 4.054 13 C -0.236 4.236 14 C -0.062 4.062 15 C -0.240 4.240 16 C 0.145 3.855 17 O -0.059 6.059 18 C -0.471 4.471 19 H 0.129 0.871 20 C -0.133 4.133 21 N -0.494 5.494 22 Si 0.720 3.280 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.159 1.159 26 N -0.285 5.285 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.263 0.737 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.160 0.840 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.577 1.096 4.075 18.076 hybrid contribution -0.981 0.300 0.948 1.397 sum -18.558 1.396 5.023 19.277 Atomic orbital electron populations 1.22779 0.80143 1.03148 1.00228 1.87948 1.20143 1.26470 1.95501 1.20682 0.83687 0.85879 1.02353 1.22441 0.97980 0.97675 0.82606 1.77278 1.02675 1.27870 1.26561 1.86130 1.06429 1.64240 0.95600 1.25022 0.90029 0.95830 0.97379 1.42947 1.04801 1.70709 1.08000 1.18706 0.79787 0.76110 0.90360 1.90873 1.76824 1.46328 1.20783 1.18249 0.90035 1.23746 0.91693 1.20776 0.98515 0.95239 0.90887 1.20564 0.93156 1.11651 0.98214 1.21047 0.95459 0.93792 0.95857 1.21302 1.00961 1.09759 0.91987 1.18899 0.90745 0.90915 0.84911 1.83731 1.26275 1.74891 1.20965 1.20959 0.77731 1.52188 0.96202 0.87114 1.24531 0.96054 0.94278 0.98425 1.69618 1.11156 1.44400 1.24182 0.86260 0.82072 0.80080 0.79603 1.19541 1.20849 1.15908 1.67257 1.03096 1.27419 1.30754 0.89292 0.93686 0.93732 0.90269 0.90395 0.73726 0.86595 0.86534 0.86429 0.84043 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.66 10.69 -35.23 -0.38 -5.04 16 3 C 0.16 1.77 6.47 36.01 0.23 2.00 16 4 C 0.28 4.32 7.19 -159.05 -1.14 3.17 16 5 N -0.51 -8.44 12.15 29.54 0.36 -8.08 16 6 S 0.34 5.94 21.16 -107.50 -2.27 3.66 16 7 C 0.29 4.77 8.50 -86.05 -0.73 4.04 16 8 N -0.61 -9.11 5.34 -13.38 -0.07 -9.18 16 9 C 0.56 10.23 7.72 -12.49 -0.10 10.14 16 10 O -0.48 -10.50 12.91 -16.57 -0.21 -10.72 16 11 C -0.23 -4.18 5.89 -104.82 -0.62 -4.80 16 12 C -0.04 -0.49 9.54 -39.19 -0.37 -0.87 16 13 C -0.22 -2.93 10.03 -39.61 -0.40 -3.32 16 14 C -0.04 -0.65 10.03 -39.54 -0.40 -1.04 16 15 C -0.22 -4.18 9.16 -39.44 -0.36 -4.54 16 16 C 0.20 4.35 6.66 -38.59 -0.26 4.09 16 17 O -0.16 -4.01 6.67 -21.02 -0.14 -4.15 16 18 C -0.40 -10.53 9.95 30.90 0.31 -10.22 16 19 H 0.11 2.92 5.44 -52.48 -0.29 2.64 16 20 C 0.07 2.01 5.49 -17.52 -0.10 1.92 16 21 N -0.86 -23.69 13.96 55.48 0.77 -22.92 16 22 Si 0.90 21.79 28.62 -169.99 -4.86 16.93 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.24 -5.96 7.11 56.52 0.40 -5.56 16 26 N -0.55 -8.61 10.60 -14.50 -0.15 -8.76 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.42 4.81 6.85 -40.82 -0.28 4.53 16 33 H 0.12 1.16 6.40 -52.49 -0.34 0.83 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.14 2.79 5.64 -52.49 -0.30 2.49 16 37 H 0.29 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -31.49 340.51 -7.94 -39.43 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -3.29 Total: 1.78 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.82 Total: 1.92 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.91 Total: -48.94 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.73 Total: -19.91 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.93 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -2.27 Total: 3.66 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.49 -7.94 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130231324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.664 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds