Wall clock time and date at job start Tue Mar 31 2020 18:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00088 * 2 1 4 4 C 1.50703 * 109.47307 * 180.02562 * 3 2 1 5 5 N 1.30170 * 121.06811 * 90.01780 * 4 3 2 6 6 S 1.69947 * 105.74617 * 179.97438 * 5 4 3 7 7 C 1.72303 * 94.56650 * 0.02562 * 6 5 4 8 8 N 1.38682 * 127.50089 * 179.97438 * 7 6 5 9 9 C 1.34776 * 120.00077 * 0.02562 * 8 7 6 10 10 O 1.21596 * 119.99968 * 0.02562 * 9 8 7 11 11 C 1.47483 * 119.99943 * 179.97438 * 9 8 7 12 12 C 1.39686 * 120.19868 * 0.02562 * 11 9 8 13 13 C 1.37825 * 119.91748 * 180.27240 * 12 11 9 14 14 C 1.38577 * 120.32013 * 359.46471 * 13 12 11 15 15 C 1.38022 * 120.41106 * 0.56124 * 14 13 12 16 16 C 1.38834 * 120.07556 * 359.69775 * 15 14 13 17 17 O 1.35513 * 120.16384 * 180.02562 * 16 15 14 18 18 C 1.34810 * 117.00316 * 354.39022 * 17 16 15 19 19 H 1.08007 * 119.99560 * 5.05669 * 18 17 16 20 20 C 1.38695 * 120.00439 * 185.05677 * 18 17 16 21 21 N 1.31513 * 120.00528 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99692 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47656 * 89.99781 * 22 20 18 24 24 H 1.48510 * 109.47077 * 209.99994 * 22 20 18 25 25 H 1.48503 * 109.47328 * 329.99436 * 22 20 18 26 26 N 1.31231 * 121.06412 * 270.29385 * 4 3 2 27 27 H 1.08998 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46943 * 300.00594 * 1 2 3 29 29 H 1.08999 * 109.46968 * 59.99936 * 1 2 3 30 30 H 1.08998 * 109.47613 * 59.99775 * 3 2 1 31 31 H 1.08999 * 109.47355 * 299.99372 * 3 2 1 32 32 H 0.97001 * 119.99527 * 180.02562 * 8 7 6 33 33 H 1.08001 * 120.04344 * 359.97438 * 12 11 9 34 34 H 1.07994 * 119.83382 * 179.72601 * 13 12 11 35 35 H 1.08001 * 119.79392 * 180.29645 * 14 13 12 36 36 H 1.07998 * 119.96759 * 179.72028 * 15 14 13 37 37 H 0.97000 * 120.00748 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.1818 1.1340 -1.1159 6 16 5.8160 1.0051 -0.6675 7 6 5.4960 1.0291 1.0254 8 7 6.4169 0.9555 2.0597 9 6 7.7323 0.8521 1.7849 10 8 8.1117 0.8239 0.6300 11 6 8.7116 0.7744 2.8849 12 6 8.2803 0.8070 4.2131 13 6 9.2009 0.7396 5.2366 14 6 10.5532 0.6284 4.9550 15 6 10.9942 0.5955 3.6475 16 6 10.0819 0.6676 2.6035 17 8 10.5128 0.6350 1.3192 18 6 11.8461 0.6487 1.1203 19 1 12.5184 0.6019 1.9644 20 6 12.3545 0.7230 -0.1679 21 7 13.6552 0.7370 -0.3619 22 14 11.1917 0.8047 -1.6276 23 1 10.8814 2.2242 -1.9346 24 1 11.8335 0.1718 -2.8078 25 1 9.9356 0.0830 -1.3009 26 7 4.1876 1.1270 1.1232 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 6.1142 0.9784 2.9810 33 1 7.2272 0.8897 4.4379 34 1 8.8664 0.7694 6.2630 35 1 11.2669 0.5714 5.7636 36 1 12.0501 0.5133 3.4362 37 1 14.0108 0.7893 -1.2628 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130231324.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:27 Heat of formation + Delta-G solvation = -27.373388 kcal Electronic energy + Delta-G solvation = -25372.457612 eV Core-core repulsion = 21435.903561 eV Total energy + Delta-G solvation = -3936.554051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05179 -41.37396 -40.33447 -38.68270 -38.27841 -36.51130 -34.54755 -33.31172 -31.98630 -30.87222 -30.09738 -27.50520 -27.06327 -26.09998 -24.42202 -23.06078 -22.64297 -21.53794 -20.14596 -19.79906 -19.31415 -18.65907 -18.08213 -17.79594 -16.96738 -16.77684 -16.62174 -16.48374 -16.23771 -15.95325 -15.83639 -15.50072 -15.32337 -14.78213 -14.30466 -14.24686 -14.07723 -13.42059 -13.21526 -13.08816 -12.94116 -12.89916 -12.71839 -12.61679 -12.45051 -12.29645 -12.03973 -11.64615 -11.21152 -10.98349 -10.95313 -10.92431 -10.73847 -10.15865 -9.87862 -9.21611 -8.59532 -6.28883 -0.84639 -0.29725 -0.08504 0.54593 0.60929 1.06174 1.19173 1.27975 1.31642 1.58041 1.73820 2.27106 2.69094 2.72220 2.90788 3.08391 3.24358 3.56498 3.90845 3.96407 4.12735 4.21324 4.39177 4.42262 4.42963 4.52360 4.54574 4.61086 4.70764 4.75873 4.88868 4.98579 5.22345 5.42902 5.53118 5.65708 5.75735 5.84246 6.06615 6.09563 6.35817 6.64788 6.76964 7.50963 8.50137 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.003541 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.132347 B = 7905.579405 C = 9823.323870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.155 3.845 4 C 0.281 3.719 5 N -0.514 5.514 6 S 0.283 5.717 7 C 0.298 3.702 8 N -0.591 5.591 9 C 0.560 3.440 10 O -0.515 6.515 11 C -0.231 4.231 12 C -0.025 4.025 13 C -0.186 4.186 14 C -0.030 4.030 15 C -0.247 4.247 16 C 0.174 3.826 17 O -0.204 6.204 18 C -0.400 4.400 19 H 0.097 0.903 20 C 0.030 3.970 21 N -0.907 5.907 22 Si 0.944 3.056 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.256 1.256 26 N -0.541 5.541 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.442 0.558 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.154 0.846 36 H 0.120 0.880 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.543 1.681 10.321 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C 0.074 3.926 4 C -0.010 4.010 5 N -0.349 5.349 6 S 0.420 5.580 7 C -0.079 4.079 8 N -0.244 5.244 9 C 0.352 3.648 10 O -0.388 6.388 11 C -0.236 4.236 12 C -0.044 4.044 13 C -0.204 4.204 14 C -0.048 4.048 15 C -0.267 4.267 16 C 0.119 3.881 17 O -0.108 6.108 18 C -0.476 4.476 19 H 0.114 0.886 20 C -0.171 4.171 21 N -0.546 5.546 22 Si 0.768 3.232 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.180 1.180 26 N -0.274 5.274 27 H 0.115 0.885 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.286 0.714 33 H 0.186 0.814 34 H 0.187 0.813 35 H 0.172 0.828 36 H 0.138 0.862 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.732 1.445 7.971 23.193 hybrid contribution -0.164 0.195 0.268 0.370 sum -21.896 1.640 8.239 23.452 Atomic orbital electron populations 1.23017 0.77737 1.04270 1.01780 1.87892 1.22739 1.26835 1.95821 1.20911 0.80976 0.86214 1.04470 1.23322 0.99838 0.95858 0.82009 1.77396 1.01623 1.28818 1.27107 1.86371 1.08183 1.65649 0.97807 1.25073 0.90405 0.95663 0.96779 1.42593 1.03467 1.69690 1.08675 1.18855 0.80791 0.75321 0.89867 1.90889 1.77772 1.47652 1.22485 1.18607 0.88600 1.22718 0.93629 1.21389 1.01506 0.92810 0.88654 1.21254 0.91858 1.06698 1.00587 1.21538 0.97504 0.91061 0.94743 1.21350 0.99894 1.11807 0.93615 1.19629 0.92713 0.91131 0.84581 1.83726 1.24697 1.79400 1.22944 1.20871 0.78868 1.52127 0.95753 0.88591 1.25011 0.96893 0.95189 1.00034 1.69666 1.11874 1.48699 1.24410 0.85569 0.79927 0.79392 0.78353 1.19917 1.19479 1.18021 1.67372 1.02292 1.27059 1.30662 0.88490 0.91896 0.92376 0.87739 0.88660 0.71394 0.81440 0.81268 0.82825 0.86232 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.04 10.69 -148.98 -1.59 -10.63 16 3 C 0.16 3.08 6.47 71.24 0.46 3.54 16 4 C 0.28 8.01 7.19 139.40 1.00 9.01 16 5 N -0.51 -16.80 12.15 -60.46 -0.73 -17.54 16 6 S 0.28 10.05 21.16 -56.49 -1.20 8.86 16 7 C 0.30 9.23 8.50 178.75 1.52 10.75 16 8 N -0.59 -16.03 5.34 -314.52 -1.68 -17.71 16 9 C 0.56 19.96 7.72 86.68 0.67 20.63 16 10 O -0.51 -23.29 12.91 16.88 0.22 -23.07 16 11 C -0.23 -7.85 5.89 -19.99 -0.12 -7.97 16 12 C -0.03 -0.56 9.54 22.52 0.21 -0.35 16 13 C -0.19 -3.74 10.03 22.25 0.22 -3.52 16 14 C -0.03 -0.78 10.03 22.30 0.22 -0.56 16 15 C -0.25 -9.32 9.16 22.36 0.20 -9.12 16 16 C 0.17 7.49 6.66 22.91 0.15 7.64 16 17 O -0.20 -10.86 6.67 0.96 0.01 -10.86 16 18 C -0.40 -22.85 9.95 67.93 0.68 -22.18 16 19 H 0.10 5.52 5.44 -2.91 -0.02 5.51 16 20 C 0.03 1.73 5.49 84.85 0.47 2.20 16 21 N -0.91 -53.47 13.96 21.62 0.30 -53.17 16 22 Si 0.94 48.13 28.62 68.60 1.96 50.09 16 23 H -0.27 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.26 -13.72 7.11 99.48 0.71 -13.01 16 26 N -0.54 -15.56 10.60 -199.79 -2.12 -17.68 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.44 7.98 6.85 -92.71 -0.64 7.35 16 33 H 0.17 2.03 6.40 -2.91 -0.02 2.01 16 34 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.12 5.00 5.64 -2.91 -0.02 4.99 16 37 H 0.29 15.63 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -76.43 340.51 2.63 -73.80 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.52 Total: 6.25 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.94 Total: 11.66 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -4.23 Total: -106.09 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.37 Total: -44.56 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.96 Total: 50.09 kcal Atomic # 16 Polarization: 10.05 SS G_CDS: -1.20 Total: 8.86 kcal Total: -76.43 2.63 -73.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130231324.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.423 kcal (2) G-P(sol) polarization free energy of solvation -76.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds