Wall clock time and date at job start Tue Mar 31 2020 19:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35241 * 107.86302 * 179.87777 * 11 10 9 13 13 C 1.40411 * 107.86611 * 0.38043 * 12 11 10 14 14 N 1.40156 * 125.97049 * 179.75956 * 13 12 11 15 15 C 1.34768 * 120.00143 * 0.03124 * 14 13 12 16 16 O 1.21284 * 120.00281 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.99811 * 179.97438 * 15 14 13 18 18 C 1.50704 * 109.46939 * 180.02562 * 17 15 14 19 19 C 1.38264 * 119.94998 * 264.73014 * 18 17 15 20 20 C 1.38127 * 120.06786 * 179.72992 * 19 18 17 21 21 C 1.38761 * 119.96972 * 0.54107 * 20 19 18 22 22 O 1.35903 * 120.05209 * 179.70742 * 21 20 19 23 23 C 1.38693 * 119.90376 * 359.73006 * 21 20 19 24 24 C 1.38280 * 119.92724 * 0.02562 * 23 21 20 25 25 Cl 1.73602 * 119.98622 * 179.97438 * 24 23 21 26 26 N 1.31221 * 108.05164 * 359.76641 * 13 12 11 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 29 29 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 30 30 H 1.08000 * 126.06750 * 0.02562 * 11 10 9 31 31 H 1.07998 * 126.06422 * 180.12700 * 12 11 10 32 32 H 0.97004 * 119.99831 * 180.02562 * 14 13 12 33 33 H 1.08990 * 109.47356 * 300.00248 * 17 15 14 34 34 H 1.09000 * 109.46854 * 60.00254 * 17 15 14 35 35 H 1.08001 * 119.96943 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.02011 * 180.25577 * 20 19 18 37 37 H 0.96706 * 114.00027 * 270.02283 * 22 21 20 38 38 H 1.08001 * 120.03720 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0532 -4.4047 -0.5782 13 6 4.2965 -4.6708 0.5743 14 7 4.2280 -5.8973 1.2491 15 6 4.9313 -6.9547 0.7982 16 8 5.6232 -6.8453 -0.1919 17 6 4.8580 -8.2733 1.5242 18 6 5.7302 -9.2823 0.8224 19 6 5.1778 -10.1446 -0.1065 20 6 5.9759 -11.0666 -0.7553 21 6 7.3313 -11.1351 -0.4664 22 8 8.1170 -12.0456 -1.0993 23 6 7.8831 -10.2733 0.4698 24 6 7.0813 -9.3485 1.1131 25 17 7.7703 -8.2695 2.2857 26 7 3.6647 -3.5705 0.9089 27 1 -0.4850 0.8400 0.0004 28 1 3.8711 -0.6780 -0.9023 29 1 3.8785 -0.6824 0.8776 30 1 5.2843 -2.6013 -1.7656 31 1 5.6844 -5.1081 -1.1009 32 1 3.6744 -5.9849 2.0409 33 1 5.2056 -8.1436 2.5490 34 1 3.8270 -8.6269 1.5322 35 1 4.1219 -10.0947 -0.3281 36 1 5.5443 -11.7371 -1.4838 37 1 8.1783 -12.8965 -0.6439 38 1 8.9379 -10.3244 0.6961 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152343625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:53 Heat of formation + Delta-G solvation = 3.204917 kcal Electronic energy + Delta-G solvation = -24817.673542 eV Core-core repulsion = 20880.401759 eV Total energy + Delta-G solvation = -3937.271783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.24017 -41.16210 -40.23279 -38.18483 -37.17350 -36.19177 -35.18899 -33.52994 -32.79238 -31.82909 -30.98532 -29.25017 -27.98203 -24.71581 -23.95816 -23.50340 -22.48870 -21.63053 -20.91858 -19.50916 -19.10572 -18.34601 -17.91235 -17.43769 -17.29692 -16.76628 -16.47932 -16.29297 -16.01560 -15.39387 -15.27749 -15.15231 -14.79865 -14.66768 -14.43306 -13.92997 -13.87191 -13.80733 -13.61788 -13.00393 -12.98476 -12.72081 -12.62057 -12.31193 -12.16931 -11.92888 -11.82583 -11.63398 -11.59717 -11.44048 -10.90426 -10.87468 -9.89702 -9.76265 -9.54523 -9.10115 -8.37640 -6.47762 0.00572 0.17368 0.94663 1.07877 1.33092 1.38791 1.41555 1.46895 1.50266 2.24279 2.28320 2.29265 2.58448 2.94877 3.20402 3.53909 3.72613 3.76087 4.00432 4.04053 4.21929 4.24670 4.41144 4.52158 4.59815 4.67652 4.79632 4.84522 4.87201 4.90987 5.03543 5.16914 5.24582 5.29910 5.32488 5.65670 5.90061 6.00951 6.25096 6.40849 6.58022 6.81838 6.99635 7.13883 7.15370 8.79264 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.002196 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.828837 B =12749.737178 C =12972.124350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.231 1.231 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.027 0.973 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.058 3.942 12 C -0.294 4.294 13 C 0.268 3.732 14 N -0.627 5.627 15 C 0.524 3.476 16 O -0.539 6.539 17 C -0.094 4.094 18 C -0.080 4.080 19 C -0.078 4.078 20 C -0.143 4.143 21 C 0.119 3.881 22 O -0.505 6.505 23 C -0.151 4.151 24 C -0.016 4.016 25 Cl -0.070 7.070 26 N -0.348 5.348 27 H 0.272 0.728 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.208 0.792 31 H 0.166 0.834 32 H 0.425 0.575 33 H 0.127 0.873 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.415 0.585 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.699 -24.435 2.806 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.154 1.154 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.046 0.954 9 C 0.119 3.881 10 N -0.127 5.127 11 C -0.090 4.090 12 C -0.325 4.325 13 C 0.013 3.987 14 N -0.277 5.277 15 C 0.311 3.689 16 O -0.413 6.413 17 C -0.133 4.133 18 C -0.082 4.082 19 C -0.096 4.096 20 C -0.161 4.161 21 C 0.074 3.926 22 O -0.318 6.318 23 C -0.170 4.170 24 C -0.043 4.043 25 Cl -0.041 7.041 26 N -0.178 5.178 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.224 0.776 31 H 0.184 0.816 32 H 0.263 0.737 33 H 0.145 0.855 34 H 0.167 0.833 35 H 0.176 0.824 36 H 0.173 0.827 37 H 0.275 0.725 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.357 -23.094 2.633 27.859 hybrid contribution 0.053 0.214 0.337 0.403 sum 15.410 -22.880 2.971 27.745 Atomic orbital electron populations 1.70045 1.08511 1.28785 1.50663 1.25912 0.95789 1.03493 0.93277 0.85628 0.79866 0.77335 0.79614 1.19042 1.15372 1.20314 1.21219 0.90435 0.93739 1.52965 0.95448 1.19890 0.94215 0.74400 0.99568 1.48502 1.34393 1.10026 1.19756 1.23222 0.94512 0.94797 0.96431 1.21736 1.11850 0.97109 1.01765 1.19506 0.97277 0.87392 0.94555 1.42671 1.48229 1.06157 1.30654 1.21196 0.77898 0.85167 0.84591 1.90647 1.39891 1.83967 1.26811 1.20737 1.04140 0.88002 1.00450 1.19283 0.91872 0.97836 0.99171 1.21181 1.01622 0.93345 0.93427 1.21748 0.92546 1.00799 1.01001 1.18359 0.89454 0.92589 0.92239 1.84799 1.68728 1.27261 1.51054 1.21383 1.01106 0.97154 0.97338 1.20726 0.93213 0.94634 0.95698 1.98381 1.84724 1.64001 1.56956 1.77309 1.25966 0.96775 1.17782 0.91880 0.90068 0.93823 0.77575 0.81644 0.73749 0.85511 0.83336 0.82361 0.82681 0.72546 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.95 40.82 27.47 68.60 1.88 42.71 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.23 -8.56 6.54 99.48 0.65 -7.91 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.52 9.79 25.60 0.25 -31.27 16 8 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 9 C 0.24 11.13 5.33 85.63 0.46 11.59 16 10 N -0.34 -15.58 3.67 -351.85 -1.29 -16.87 16 11 C 0.06 2.19 11.43 83.52 0.96 3.15 16 12 C -0.29 -11.27 9.61 22.11 0.21 -11.06 16 13 C 0.27 10.55 8.11 133.33 1.08 11.63 16 14 N -0.63 -18.25 5.45 -307.52 -1.68 -19.93 16 15 C 0.52 13.57 7.79 87.66 0.68 14.26 16 16 O -0.54 -17.77 13.16 -3.04 -0.04 -17.81 16 17 C -0.09 -1.48 5.34 29.11 0.16 -1.32 16 18 C -0.08 -1.43 4.38 -19.83 -0.09 -1.52 16 19 C -0.08 -1.15 9.67 22.25 0.22 -0.93 16 20 C -0.14 -2.01 9.99 22.37 0.22 -1.79 16 21 C 0.12 1.87 6.70 22.50 0.15 2.02 16 22 O -0.50 -6.47 13.50 -92.46 -1.25 -7.72 16 23 C -0.15 -2.67 9.77 22.39 0.22 -2.46 16 24 C -0.02 -0.31 6.31 22.31 0.14 -0.17 16 25 Cl -0.07 -1.43 27.39 -2.72 -0.07 -1.50 16 26 N -0.35 -16.12 12.42 -54.45 -0.68 -16.80 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.08 3.30 7.12 -2.39 -0.02 3.29 16 29 H 0.04 1.97 7.57 -2.39 -0.02 1.95 16 30 H 0.21 5.80 8.06 -2.91 -0.02 5.78 16 31 H 0.17 6.20 5.92 -2.91 -0.02 6.19 16 32 H 0.42 9.77 8.82 -92.71 -0.82 8.95 16 33 H 0.13 1.64 7.11 -2.39 -0.02 1.62 16 34 H 0.15 1.28 8.05 -2.39 -0.02 1.26 16 35 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.41 0.84 9.06 -74.05 -0.67 0.17 16 38 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -82.33 349.72 1.90 -80.43 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.40 Total: 21.73 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 5.12 Total: -6.61 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -3.34 Total: -111.23 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -1.29 Total: -25.53 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.71 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.07 Total: -1.50 kcal Total: -82.33 1.90 -80.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152343625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.639 kcal (2) G-P(sol) polarization free energy of solvation -82.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds