Wall clock time and date at job start Tue Mar 31 2020 18:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35859 * 117.00151 * 2 1 4 4 C 1.38880 * 119.91080 * 179.97438 * 3 2 1 5 5 C 1.37830 * 120.09288 * 179.97438 * 4 3 2 6 6 C 1.39648 * 119.91007 * 0.02562 * 5 4 3 7 7 C 1.47720 * 120.09508 * 179.97438 * 6 5 4 8 8 N 1.31087 * 126.30085 * 0.04456 * 7 6 5 9 9 N 1.28653 * 109.41801 * 179.69270 * 8 7 6 10 10 C 1.31268 * 109.44687 * 0.44402 * 9 8 7 11 11 S 1.76195 * 126.28146 * 179.82507 * 10 9 8 12 12 C 1.80996 * 99.99998 * 359.68909 * 11 10 9 13 13 C 1.50706 * 109.47276 * 179.97438 * 12 11 10 14 14 O 1.21297 * 119.99667 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00081 * 179.72626 * 13 12 11 16 16 C 1.37095 * 119.99878 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00160 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00380 * 179.97438 * 16 15 13 19 19 N 1.31404 * 120.00261 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99599 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47644 * 89.99834 * 20 18 16 22 22 H 1.48506 * 109.47143 * 209.99780 * 20 18 16 23 23 H 1.48501 * 109.47120 * 329.99495 * 20 18 16 24 24 O 1.34697 * 107.43479 * 359.56166 * 10 9 8 25 25 C 1.39658 * 119.81277 * 0.27142 * 6 5 4 26 26 C 1.37832 * 119.90552 * 359.44922 * 25 6 5 27 27 H 1.09002 * 109.46650 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47261 * 299.99888 * 1 2 3 29 29 H 1.08993 * 109.47076 * 60.00286 * 1 2 3 30 30 H 1.08002 * 119.94980 * 359.95563 * 4 3 2 31 31 H 1.07999 * 120.04411 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47654 * 60.00189 * 12 11 10 33 33 H 1.08998 * 109.47543 * 300.00143 * 12 11 10 34 34 H 0.96998 * 120.00525 * 359.97438 * 15 13 12 35 35 H 0.97009 * 120.00065 * 180.02562 * 19 18 16 36 36 H 1.07999 * 120.04310 * 179.70260 * 25 6 5 37 37 H 1.07994 * 119.95128 * 180.29468 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 3.4328 1.2810 0.0005 5 6 4.0625 2.5070 0.0000 6 6 3.3038 3.6795 -0.0005 7 6 3.9744 4.9957 -0.0005 8 7 5.2681 5.2076 -0.0009 9 7 5.4940 6.4741 -0.0073 10 6 4.3523 7.1218 -0.0017 11 16 4.1462 8.8716 -0.0025 12 6 5.8796 9.3923 -0.0030 13 6 5.9521 10.8976 -0.0044 14 8 4.9320 11.5538 -0.0054 15 7 7.1503 11.5146 0.0006 16 6 7.2161 12.8839 -0.0002 17 1 6.3078 13.4683 -0.0051 18 6 8.4514 13.5202 0.0055 19 7 8.5145 14.8327 0.0043 20 14 10.0224 12.5095 0.0134 21 1 10.4454 12.2411 -1.3845 22 1 11.0914 13.2618 0.7182 23 1 9.7794 11.2223 0.7129 24 8 3.3672 6.2031 -0.0011 25 6 1.9093 3.6041 0.0052 26 6 1.2876 2.3740 -0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 4.0188 0.3738 0.0017 31 1 5.1411 2.5609 0.0000 32 1 6.3754 9.0043 -0.8929 33 1 6.3756 9.0051 0.8870 34 1 7.9661 10.9899 0.0054 35 1 9.3769 15.2769 0.0079 36 1 1.3190 4.5085 0.0097 37 1 0.2092 2.3149 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162039358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:49 Heat of formation + Delta-G solvation = 6.231746 kcal Electronic energy + Delta-G solvation = -23907.337810 eV Core-core repulsion = 19972.240987 eV Total energy + Delta-G solvation = -3935.096823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.06668 -40.63811 -38.53165 -38.05294 -36.25482 -34.23467 -32.65037 -31.91237 -31.74165 -30.08677 -29.35044 -27.89350 -24.88342 -24.47768 -24.07023 -22.77070 -21.84523 -19.85001 -19.07305 -18.77194 -18.19501 -17.48941 -17.18750 -16.75229 -16.30451 -16.18835 -15.87430 -15.00409 -14.94553 -14.88145 -14.33689 -14.13536 -13.90829 -13.49287 -13.39909 -13.10339 -12.83828 -12.59180 -12.50979 -12.41788 -12.21277 -12.02423 -11.91273 -11.52216 -11.33976 -11.27997 -10.69936 -10.61381 -10.53462 -10.11173 -9.75991 -9.61158 -8.92565 -8.78560 -8.37253 -7.69681 -6.45877 -3.99029 0.16858 0.55206 0.79692 1.31529 1.96091 2.26813 2.51809 2.68584 2.95817 3.01117 3.09873 3.26187 3.43597 3.88687 3.99083 4.21882 4.31990 4.32799 4.52957 4.60432 4.68872 4.79629 4.87983 4.92659 5.02446 5.05262 5.13318 5.14945 5.34639 5.43273 5.46419 5.64679 5.66536 5.76843 5.92505 6.08627 6.75944 7.36677 7.92789 8.06309 8.35997 8.74888 9.22369 9.53521 10.65787 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.001848 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.571994 B =15144.346865 C =15870.457417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.149 3.851 4 C -0.152 4.152 5 C -0.028 4.028 6 C -0.057 4.057 7 C 0.202 3.798 8 N -0.266 5.266 9 N -0.294 5.294 10 C 0.126 3.874 11 S 0.156 5.844 12 C -0.148 4.148 13 C 0.459 3.541 14 O -0.567 6.567 15 N -0.568 5.568 16 C -0.312 4.312 17 H 0.124 0.876 18 C 0.048 3.952 19 N -0.870 5.870 20 Si 0.878 3.122 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.267 1.267 24 O -0.204 6.204 25 C -0.042 4.042 26 C -0.210 4.210 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.376 0.624 35 H 0.277 0.723 36 H 0.137 0.863 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 -29.492 0.001 32.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.103 3.897 4 C -0.170 4.170 5 C -0.047 4.047 6 C -0.059 4.059 7 C -0.011 4.011 8 N -0.114 5.114 9 N -0.146 5.146 10 C -0.189 4.189 11 S 0.385 5.615 12 C -0.300 4.300 13 C 0.243 3.757 14 O -0.451 6.451 15 N -0.205 5.205 16 C -0.440 4.440 17 H 0.141 0.859 18 C -0.157 4.157 19 N -0.508 5.508 20 Si 0.704 3.296 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.192 1.192 24 O -0.085 6.085 25 C -0.062 4.062 26 C -0.228 4.228 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.209 0.791 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.055 -28.511 -0.005 31.358 hybrid contribution 1.065 -1.009 0.026 1.467 sum -11.990 -29.520 0.021 31.862 Atomic orbital electron populations 1.23151 0.77823 1.04389 1.01754 1.86092 1.21885 1.26679 1.87921 1.19282 0.92453 0.84310 0.93688 1.20368 0.91281 0.98519 1.06874 1.21009 1.00845 0.89359 0.93506 1.17096 0.92550 0.85717 1.10539 1.25329 0.88020 0.85778 1.01928 1.74389 1.12183 1.08474 1.16363 1.74930 1.21760 0.97849 1.20105 1.30862 0.84150 1.01407 1.02506 1.86834 1.07961 0.77353 1.89334 1.23898 0.96978 1.00578 1.08586 1.18605 0.85021 0.85928 0.86123 1.90615 1.33506 1.65486 1.55533 1.42050 1.05677 1.07862 1.64945 1.19465 0.96617 0.79002 1.48920 0.85857 1.25056 0.98015 0.95674 0.96934 1.69612 1.26369 1.07291 1.47541 0.86689 0.83514 0.80195 0.79236 1.19287 1.19846 1.19192 1.84994 1.37538 1.14875 1.71116 1.21074 0.92692 0.98205 0.94235 1.21157 1.00587 0.91585 1.09495 0.87900 0.92254 0.92246 0.83934 0.83433 0.86516 0.86533 0.79106 0.91251 0.84536 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.17 10.49 -19.30 -0.20 -2.38 16 3 C 0.15 1.13 6.69 -39.11 -0.26 0.87 16 4 C -0.15 -1.16 9.97 -39.49 -0.39 -1.55 16 5 C -0.03 -0.25 9.69 -39.20 -0.38 -0.63 16 6 C -0.06 -0.59 5.87 -104.97 -0.62 -1.21 16 7 C 0.20 2.74 7.98 -14.00 -0.11 2.63 16 8 N -0.27 -4.13 11.89 32.08 0.38 -3.75 16 9 N -0.29 -4.84 11.62 30.32 0.35 -4.49 16 10 C 0.13 1.96 8.53 52.52 0.45 2.41 16 11 S 0.16 2.47 21.45 -107.50 -2.31 0.16 16 12 C -0.15 -2.45 5.71 36.01 0.21 -2.25 16 13 C 0.46 9.99 7.80 -10.98 -0.09 9.91 16 14 O -0.57 -14.42 15.44 5.54 0.09 -14.33 16 15 N -0.57 -13.02 5.09 -10.96 -0.06 -13.07 16 16 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 17 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 18 C 0.05 1.27 5.50 -17.47 -0.10 1.18 16 19 N -0.87 -24.51 13.96 55.50 0.77 -23.73 16 20 Si 0.88 18.73 27.74 -169.99 -4.71 14.01 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 24 O -0.20 -2.94 10.69 2.22 0.02 -2.91 16 25 C -0.04 -0.36 9.72 -39.20 -0.38 -0.74 16 26 C -0.21 -1.46 9.02 -39.49 -0.36 -1.81 16 27 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 0.15 7.65 -51.93 -0.40 -0.25 16 29 H 0.06 0.15 7.65 -51.93 -0.40 -0.25 16 30 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.15 1.23 7.86 -52.49 -0.41 0.82 16 32 H 0.12 1.73 8.14 -51.92 -0.42 1.30 16 33 H 0.12 1.74 8.14 -51.92 -0.42 1.31 16 34 H 0.38 7.55 5.76 -40.82 -0.24 7.32 16 35 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.14 1.03 7.93 -52.49 -0.42 0.61 16 37 H 0.14 0.61 6.28 -52.49 -0.33 0.29 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -32.88 346.83 -5.06 -37.94 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -3.43 Total: 6.08 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.19 Total: 1.25 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 1.45 Total: -45.05 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.09 Total: -19.62 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.71 Total: 14.01 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.31 Total: 0.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.88 -5.06 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162039358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.168 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds