Wall clock time and date at job start Tue Mar 31 2020 18:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35859 * 117.00151 * 2 1 4 4 C 1.38880 * 119.91080 * 179.97438 * 3 2 1 5 5 C 1.37830 * 120.09288 * 179.97438 * 4 3 2 6 6 C 1.39648 * 119.91007 * 0.02562 * 5 4 3 7 7 C 1.47720 * 120.09508 * 179.97438 * 6 5 4 8 8 N 1.31087 * 126.30085 * 0.04456 * 7 6 5 9 9 N 1.28653 * 109.41801 * 179.69270 * 8 7 6 10 10 C 1.31268 * 109.44687 * 0.44402 * 9 8 7 11 11 S 1.76195 * 126.28146 * 179.82507 * 10 9 8 12 12 C 1.80996 * 99.99998 * 359.68909 * 11 10 9 13 13 C 1.50706 * 109.47276 * 179.97438 * 12 11 10 14 14 O 1.21297 * 119.99667 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00081 * 179.72626 * 13 12 11 16 16 C 1.37095 * 119.99878 * 180.02562 * 15 13 12 17 17 H 1.08004 * 120.00160 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00380 * 179.97438 * 16 15 13 19 19 N 1.31404 * 120.00261 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99599 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47644 * 89.99834 * 20 18 16 22 22 H 1.48506 * 109.47143 * 209.99780 * 20 18 16 23 23 H 1.48501 * 109.47120 * 329.99495 * 20 18 16 24 24 O 1.34697 * 107.43479 * 359.56166 * 10 9 8 25 25 C 1.39658 * 119.81277 * 0.27142 * 6 5 4 26 26 C 1.37832 * 119.90552 * 359.44922 * 25 6 5 27 27 H 1.09002 * 109.46650 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47261 * 299.99888 * 1 2 3 29 29 H 1.08993 * 109.47076 * 60.00286 * 1 2 3 30 30 H 1.08002 * 119.94980 * 359.95563 * 4 3 2 31 31 H 1.07999 * 120.04411 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47654 * 60.00189 * 12 11 10 33 33 H 1.08998 * 109.47543 * 300.00143 * 12 11 10 34 34 H 0.96998 * 120.00525 * 359.97438 * 15 13 12 35 35 H 0.97009 * 120.00065 * 180.02562 * 19 18 16 36 36 H 1.07999 * 120.04310 * 179.70260 * 25 6 5 37 37 H 1.07994 * 119.95128 * 180.29468 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 3.4328 1.2810 0.0005 5 6 4.0625 2.5070 0.0000 6 6 3.3038 3.6795 -0.0005 7 6 3.9744 4.9957 -0.0005 8 7 5.2681 5.2076 -0.0009 9 7 5.4940 6.4741 -0.0073 10 6 4.3523 7.1218 -0.0017 11 16 4.1462 8.8716 -0.0025 12 6 5.8796 9.3923 -0.0030 13 6 5.9521 10.8976 -0.0044 14 8 4.9320 11.5538 -0.0054 15 7 7.1503 11.5146 0.0006 16 6 7.2161 12.8839 -0.0002 17 1 6.3078 13.4683 -0.0051 18 6 8.4514 13.5202 0.0055 19 7 8.5145 14.8327 0.0043 20 14 10.0224 12.5095 0.0134 21 1 10.4454 12.2411 -1.3845 22 1 11.0914 13.2618 0.7182 23 1 9.7794 11.2223 0.7129 24 8 3.3672 6.2031 -0.0011 25 6 1.9093 3.6041 0.0052 26 6 1.2876 2.3740 -0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 4.0188 0.3738 0.0017 31 1 5.1411 2.5609 0.0000 32 1 6.3754 9.0043 -0.8929 33 1 6.3756 9.0051 0.8870 34 1 7.9661 10.9899 0.0054 35 1 9.3769 15.2769 0.0079 36 1 1.3190 4.5085 0.0097 37 1 0.2092 2.3149 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162039358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:48 Heat of formation + Delta-G solvation = -20.354838 kcal Electronic energy + Delta-G solvation = -23908.490691 eV Core-core repulsion = 19972.240987 eV Total energy + Delta-G solvation = -3936.249704 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.18514 -41.18535 -40.38177 -38.62672 -37.38673 -36.18712 -33.91593 -33.52657 -32.34436 -31.40255 -30.38261 -28.29892 -26.64390 -25.62765 -25.03365 -23.46654 -22.62142 -21.63680 -20.71844 -19.73814 -19.22556 -18.61839 -18.14509 -17.90689 -17.42342 -16.78943 -16.77614 -16.71270 -16.45827 -15.69517 -15.54893 -15.17936 -14.79021 -14.67603 -14.51360 -14.10952 -14.09065 -13.92552 -13.73780 -13.66430 -13.19423 -12.99463 -12.90094 -12.58201 -12.46650 -12.45702 -12.01977 -11.91259 -11.75964 -11.61206 -11.54914 -10.79405 -10.36053 -10.20902 -9.55810 -8.80795 -8.47229 -6.10062 -0.70040 -0.67597 0.20979 0.35708 0.67955 1.23797 1.30001 1.33164 1.43411 1.48834 1.71613 2.19132 2.24417 2.60474 2.65491 2.96101 3.07836 3.61761 3.68656 3.75496 3.88015 3.89661 3.97678 4.07080 4.16085 4.26155 4.31685 4.42314 4.42643 4.51904 4.77660 4.89803 5.02776 5.14855 5.26760 5.43983 5.49306 5.84575 6.27705 6.43270 6.73995 6.93747 7.22991 7.71340 8.68817 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.001848 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.571994 B =15144.346865 C =15870.457417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.154 3.846 4 C -0.156 4.156 5 C -0.026 4.026 6 C -0.088 4.088 7 C 0.220 3.780 8 N -0.295 5.295 9 N -0.305 5.305 10 C 0.121 3.879 11 S 0.152 5.848 12 C -0.138 4.138 13 C 0.466 3.534 14 O -0.608 6.608 15 N -0.569 5.569 16 C -0.333 4.333 17 H 0.066 0.934 18 C -0.004 4.004 19 N -0.922 5.922 20 Si 0.956 3.044 21 H -0.256 1.256 22 H -0.272 1.272 23 H -0.232 1.232 24 O -0.206 6.206 25 C -0.040 4.040 26 C -0.205 4.205 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.393 0.607 35 H 0.282 0.718 36 H 0.144 0.856 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 -33.455 0.046 35.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.237 6.237 3 C 0.107 3.893 4 C -0.174 4.174 5 C -0.046 4.046 6 C -0.090 4.090 7 C 0.008 3.992 8 N -0.142 5.142 9 N -0.157 5.157 10 C -0.196 4.196 11 S 0.380 5.620 12 C -0.290 4.290 13 C 0.252 3.748 14 O -0.494 6.494 15 N -0.209 5.209 16 C -0.462 4.462 17 H 0.084 0.916 18 C -0.204 4.204 19 N -0.561 5.561 20 Si 0.776 3.224 21 H -0.180 1.180 22 H -0.197 1.197 23 H -0.156 1.156 24 O -0.087 6.087 25 C -0.060 4.060 26 C -0.224 4.224 27 H 0.139 0.861 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.162 0.838 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.972 -32.521 0.042 35.013 hybrid contribution 0.748 0.023 0.007 0.748 sum -12.224 -32.498 0.049 34.721 Atomic orbital electron populations 1.23471 0.75871 1.06043 1.02793 1.86093 1.23937 1.26262 1.87434 1.19463 0.92634 0.84905 0.92344 1.20560 0.91800 0.98575 1.06475 1.21060 1.00936 0.89380 0.93214 1.17288 0.93529 0.84604 1.13608 1.25958 0.87722 0.86328 0.99161 1.74353 1.13159 1.08041 1.18629 1.74848 1.22251 0.98455 1.20190 1.30599 0.84299 1.01135 1.03554 1.86898 1.07135 0.77901 1.90022 1.23711 0.98292 0.96005 1.10979 1.19441 0.83948 0.88144 0.83264 1.90604 1.35014 1.67412 1.56353 1.41843 1.06948 1.06362 1.65770 1.19049 0.95256 0.80884 1.51057 0.91639 1.26037 1.02005 0.96880 0.95502 1.69771 1.27862 1.09721 1.48749 0.85479 0.77241 0.79503 0.80144 1.18018 1.19731 1.15558 1.84994 1.37398 1.15110 1.71247 1.21222 0.91948 0.99274 0.93587 1.21411 1.01960 0.90632 1.08383 0.86149 0.91175 0.91170 0.82289 0.83418 0.84046 0.84128 0.77031 0.90798 0.83806 0.81732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -3.58 10.49 -91.96 -0.96 -4.54 16 3 C 0.15 1.94 6.69 22.58 0.15 2.09 16 4 C -0.16 -2.05 9.97 22.33 0.22 -1.83 16 5 C -0.03 -0.43 9.69 22.51 0.22 -0.22 16 6 C -0.09 -1.73 5.87 -20.09 -0.12 -1.85 16 7 C 0.22 5.78 7.98 87.31 0.70 6.48 16 8 N -0.30 -8.90 11.89 -166.15 -1.97 -10.87 16 9 N -0.31 -9.69 11.62 -171.88 -2.00 -11.68 16 10 C 0.12 3.63 8.53 130.33 1.11 4.74 16 11 S 0.15 4.70 21.45 -56.49 -1.21 3.49 16 12 C -0.14 -4.35 5.71 71.24 0.41 -3.94 16 13 C 0.47 20.25 7.80 87.66 0.68 20.94 16 14 O -0.61 -31.80 15.44 -3.08 -0.05 -31.85 16 15 N -0.57 -25.94 5.09 -306.98 -1.56 -27.50 16 16 C -0.33 -18.80 10.16 84.04 0.85 -17.95 16 17 H 0.07 4.37 7.39 -2.91 -0.02 4.35 16 18 C 0.00 -0.19 5.50 84.93 0.47 0.28 16 19 N -0.92 -53.71 13.96 21.66 0.30 -53.41 16 20 Si 0.96 37.66 27.74 68.60 1.90 39.56 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 22 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.23 -7.79 6.52 99.48 0.65 -7.14 16 24 O -0.21 -5.76 10.69 -14.97 -0.16 -5.92 16 25 C -0.04 -0.61 9.72 22.52 0.22 -0.39 16 26 C -0.21 -2.28 9.02 22.33 0.20 -2.08 16 27 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.07 0.11 7.65 -2.39 -0.02 0.09 16 29 H 0.07 0.11 7.65 -2.39 -0.02 0.09 16 30 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.15 2.34 7.86 -2.91 -0.02 2.32 16 32 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 33 H 0.14 3.82 8.14 -2.40 -0.02 3.80 16 34 H 0.39 14.91 5.76 -92.71 -0.53 14.38 16 35 H 0.28 15.02 8.31 -92.70 -0.77 14.25 16 36 H 0.14 1.90 7.93 -2.91 -0.02 1.88 16 37 H 0.17 0.86 6.28 -2.91 -0.02 0.85 16 Total: -1.00 -75.11 346.83 1.07 -74.05 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.55 Total: 21.27 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 6.23 Total: 7.42 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -5.23 Total: -103.47 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.17 Total: -42.31 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.56 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -1.21 Total: 3.49 kcal Total: -75.11 1.07 -74.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162039358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.693 kcal (2) G-P(sol) polarization free energy of solvation -75.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds