Wall clock time and date at job start Tue Mar 31 2020 19:18:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86804 * 120.00098 * 2 1
4 4 H 1.48499 * 109.47105 * 269.99669 * 3 2 1
5 5 H 1.48495 * 109.46996 * 30.00195 * 3 2 1
6 6 H 1.48503 * 109.46933 * 149.99891 * 3 2 1
7 7 C 1.37879 * 119.99965 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00186 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99978 * 0.02562 * 7 2 1
10 10 N 1.46503 * 109.47254 * 180.02562 * 9 7 2
11 11 C 1.46506 * 119.99533 * 269.99989 * 10 9 7
12 12 C 1.50697 * 109.46981 * 282.17908 * 11 10 9
13 13 C 1.34517 * 125.79142 * 83.53699 * 12 11 10
14 14 C 1.41384 * 106.84362 * 180.02562 * 13 12 11
15 15 C 1.34521 * 106.83804 * 0.02562 * 14 13 12
16 16 O 1.34300 * 108.42062 * 359.73494 * 15 14 13
17 17 C 1.34771 * 120.00275 * 89.99182 * 10 9 7
18 18 O 1.21511 * 120.00306 * 6.92532 * 17 10 9
19 19 C 1.48163 * 120.00102 * 186.91554 * 17 10 9
20 20 C 1.39578 * 120.87667 * 312.83739 * 19 17 10
21 21 C 1.39037 * 118.96350 * 180.32011 * 20 19 17
22 22 N 1.39026 * 119.63694 * 179.67804 * 21 20 19
23 23 N 1.32373 * 120.73225 * 359.69747 * 21 20 19
24 24 C 1.31972 * 121.92551 * 0.02562 * 23 21 20
25 25 Cl 1.73609 * 119.51333 * 180.02562 * 24 23 21
26 26 C 1.38170 * 120.96923 * 0.02562 * 24 23 21
27 27 H 0.96996 * 119.99855 * 0.02562 * 1 2 3
28 28 H 1.08995 * 109.47001 * 59.99764 * 9 7 2
29 29 H 1.08997 * 109.46696 * 299.99953 * 9 7 2
30 30 H 1.08997 * 109.47246 * 42.18351 * 11 10 9
31 31 H 1.08996 * 109.46919 * 162.18102 * 11 10 9
32 32 H 1.07999 * 126.57344 * 359.96884 * 13 12 11
33 33 H 1.07996 * 126.58082 * 179.97438 * 14 13 12
34 34 H 1.07999 * 125.78404 * 180.02562 * 15 14 13
35 35 H 1.08000 * 120.51984 * 359.97438 * 20 19 17
36 36 H 0.97003 * 120.00237 * 180.02562 * 22 21 20
37 37 H 0.96996 * 119.99642 * 0.02562 * 22 21 20
38 38 H 1.07995 * 120.42325 * 179.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0017
10 7 2.2030 -3.6127 -0.0015
11 6 2.6799 -4.1689 -1.2702
12 6 1.6192 -5.0647 -1.8563
13 6 0.5703 -4.6621 -2.5961
14 6 -0.1629 -5.8230 -2.9331
15 6 0.4814 -6.8655 -2.3786
16 8 1.5631 -6.4008 -1.7322
17 6 2.6401 -4.1254 1.1658
18 8 2.1525 -3.7516 2.2141
19 6 3.7150 -5.1451 1.1707
20 6 3.6676 -6.2402 0.3066
21 6 4.6943 -7.1767 0.3496
22 7 4.6577 -8.2764 -0.5002
23 7 5.7062 -7.0331 1.1909
24 6 5.7861 -6.0076 2.0178
25 17 7.1419 -5.8811 3.0947
26 6 4.8066 -5.0333 2.0389
27 1 -0.4850 0.8400 -0.0004
28 1 0.6247 -2.5563 -0.8919
29 1 0.6240 -2.5574 0.8880
30 1 2.8944 -3.3570 -1.9650
31 1 3.5874 -4.7467 -1.0953
32 1 0.3333 -3.6468 -2.8777
33 1 -1.0673 -5.8647 -3.5220
34 1 0.1824 -7.9011 -2.4461
35 1 2.8433 -6.3612 -0.3807
36 1 5.3710 -8.9333 -0.4744
37 1 3.9188 -8.3868 -1.1188
38 1 4.8807 -4.1981 2.7195
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000171209368.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:18:52
Heat of formation + Delta-G solvation = 31.335240 kcal
Electronic energy + Delta-G solvation = -26505.497576 eV
Core-core repulsion = 22569.445616 eV
Total energy + Delta-G solvation = -3936.051961 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.082 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.50810 -40.60448 -38.81095 -36.77651 -35.49031 -34.64903 -33.15536 -32.90209
-32.18116 -30.30511 -29.27664 -27.66254 -25.76717 -24.50421 -23.47539 -22.35540
-21.59225 -20.59056 -19.46682 -17.87433 -17.70765 -17.29161 -16.43979 -16.24445
-15.95476 -15.72360 -15.52418 -14.99506 -14.91093 -14.64401 -14.49932 -14.17127
-13.72953 -12.94877 -12.84327 -12.77439 -12.57616 -12.27534 -12.22209 -11.95788
-11.50960 -11.36209 -11.29322 -10.99463 -10.71473 -10.56418 -10.27521 -10.02156
-9.84802 -9.74154 -9.66918 -9.18193 -8.51045 -8.39698 -8.02582 -7.96325
-6.12571 -4.18356 0.82161 1.14270 1.69178 1.78699 2.74941 2.89541
3.18098 3.26397 3.33933 3.37509 3.41008 3.59052 3.82619 4.37256
4.55566 4.81846 4.88190 5.00550 5.02913 5.12827 5.22240 5.24885
5.37424 5.41731 5.56166 5.80922 5.92911 6.06671 6.13207 6.22133
6.35640 6.64432 6.86444 6.98756 7.17076 7.18983 7.30907 7.36084
7.82676 7.92717 8.07955 8.11468 8.65088 8.87492 9.47281 10.95576
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.008872 B = 0.004924 C = 0.003367
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3155.232126 B = 5685.208434 C = 8314.659570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.065 3.935
3 Si 0.898 3.102
4 H -0.280 1.280
5 H -0.285 1.285
6 H -0.273 1.273
7 C -0.534 4.534
8 H 0.060 0.940
9 C 0.244 3.756
10 N -0.580 5.580
11 C 0.176 3.824
12 C -0.031 4.031
13 C -0.182 4.182
14 C -0.209 4.209
15 C -0.051 4.051
16 O -0.183 6.183
17 C 0.554 3.446
18 O -0.515 6.515
19 C -0.019 4.019
20 C -0.218 4.218
21 C 0.421 3.579
22 N -0.847 5.847
23 N -0.536 5.536
24 C 0.222 3.778
25 Cl -0.031 7.031
26 C -0.165 4.165
27 H 0.265 0.735
28 H 0.040 0.960
29 H 0.048 0.952
30 H 0.114 0.886
31 H 0.095 0.905
32 H 0.154 0.846
33 H 0.146 0.854
34 H 0.199 0.801
35 H 0.160 0.840
36 H 0.404 0.596
37 H 0.412 0.588
38 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.930 -16.430 -5.503 18.662
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.138 4.138
3 Si 0.726 3.274
4 H -0.206 1.206
5 H -0.210 1.210
6 H -0.198 1.198
7 C -0.572 4.572
8 H 0.078 0.922
9 C 0.126 3.874
10 N -0.311 5.311
11 C 0.052 3.948
12 C -0.081 4.081
13 C -0.202 4.202
14 C -0.228 4.228
15 C -0.118 4.118
16 O -0.081 6.081
17 C 0.339 3.661
18 O -0.390 6.390
19 C -0.030 4.030
20 C -0.243 4.243
21 C 0.183 3.817
22 N -0.391 5.391
23 N -0.258 5.258
24 C 0.058 3.942
25 Cl -0.003 7.003
26 C -0.190 4.190
27 H 0.074 0.926
28 H 0.058 0.942
29 H 0.066 0.934
30 H 0.132 0.868
31 H 0.113 0.887
32 H 0.171 0.829
33 H 0.164 0.836
34 H 0.216 0.784
35 H 0.177 0.823
36 H 0.234 0.766
37 H 0.243 0.757
38 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 7.449 -16.799 -4.647 18.955
hybrid contribution -0.389 1.204 -0.390 1.324
sum 7.060 -15.595 -5.038 17.845
Atomic orbital electron populations
1.69929 1.06011 1.27203 1.49818 1.24913 0.94865 0.99220 0.94808
0.86491 0.79918 0.82939 0.78085 1.20565 1.21047 1.19752 1.21405
0.93468 0.90393 1.51963 0.92160 1.19446 0.87328 0.81390 0.99231
1.48217 1.45602 1.34370 1.02923 1.20197 0.92276 0.94759 0.87570
1.23072 1.01635 0.80624 1.02814 1.21779 0.95741 1.00422 1.02275
1.21859 1.02782 0.92489 1.05684 1.23967 0.88480 0.99766 0.99578
1.83825 1.41661 1.22334 1.60232 1.18032 0.82237 0.81077 0.84728
1.90795 1.57307 1.59961 1.30967 1.20334 0.94463 0.94822 0.93396
1.22176 1.01995 0.96092 1.04080 1.17817 0.88388 0.87476 0.88009
1.42152 1.29879 1.24895 1.42181 1.66115 1.26206 1.24838 1.08594
1.20945 0.89831 0.91116 0.92343 1.98401 1.43749 1.97134 1.60968
1.21546 0.93678 1.01328 1.02425 0.92582 0.94214 0.93352 0.86830
0.88670 0.82865 0.83619 0.78405 0.82280 0.76606 0.75728 0.83091
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16
2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16
4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
7 C -0.53 -14.33 9.39 -34.44 -0.32 -14.65 16
8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16
9 C 0.24 6.06 5.18 -5.19 -0.03 6.03 16
10 N -0.58 -11.84 2.47 -177.43 -0.44 -12.28 16
11 C 0.18 2.80 5.46 -5.19 -0.03 2.78 16
12 C -0.03 -0.46 6.41 -35.63 -0.23 -0.69 16
13 C -0.18 -2.72 10.08 -39.70 -0.40 -3.12 16
14 C -0.21 -2.58 10.91 -39.70 -0.43 -3.01 16
15 C -0.05 -0.55 12.09 29.42 0.36 -0.19 16
16 O -0.18 -2.34 7.97 5.70 0.05 -2.30 16
17 C 0.55 11.59 7.30 -12.19 -0.09 11.50 16
18 O -0.51 -12.82 16.58 5.36 0.09 -12.73 16
19 C -0.02 -0.32 5.10 -104.69 -0.53 -0.85 16
20 C -0.22 -3.10 7.30 -38.79 -0.28 -3.38 16
21 C 0.42 5.39 7.74 -155.06 -1.20 4.19 16
22 N -0.85 -7.35 9.07 31.11 0.28 -7.07 16
23 N -0.54 -7.60 10.34 -9.59 -0.10 -7.70 16
24 C 0.22 3.25 7.27 -17.52 -0.13 3.12 16
25 Cl -0.03 -0.40 29.10 -51.86 -1.51 -1.91 16
26 C -0.17 -2.63 9.59 -38.98 -0.37 -3.01 16
27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16
28 H 0.04 0.98 6.97 -51.93 -0.36 0.62 16
29 H 0.05 1.38 7.34 -51.93 -0.38 1.00 16
30 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16
31 H 0.10 1.34 4.74 -51.93 -0.25 1.10 16
32 H 0.15 2.38 7.77 -52.49 -0.41 1.97 16
33 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16
34 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16
35 H 0.16 2.15 3.32 -52.49 -0.17 1.98 16
36 H 0.40 2.90 8.95 -40.82 -0.37 2.54 16
37 H 0.41 2.76 8.82 -40.82 -0.36 2.40 16
38 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16
LS Contribution 345.30 15.07 5.20 5.20
Total: -1.00 -32.45 345.30 -8.03 -40.48
By element:
Atomic # 1 Polarization: 10.11 SS G_CDS: -3.53 Total: 6.57 kcal
Atomic # 6 Polarization: 4.18 SS G_CDS: -3.79 Total: 0.39 kcal
Atomic # 7 Polarization: -52.25 SS G_CDS: 0.48 Total: -51.77 kcal
Atomic # 8 Polarization: -15.16 SS G_CDS: 0.13 Total: -15.02 kcal
Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal
Atomic # 17 Polarization: -0.40 SS G_CDS: -1.51 Total: -1.91 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -32.45 -8.03 -40.48 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171209368.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.820 kcal
(2) G-P(sol) polarization free energy of solvation -32.452 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.368 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.335 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds