Wall clock time and date at job start Tue Mar 31 2020 19:18:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86804 * 120.00098 * 2 1
4 4 H 1.48499 * 109.47105 * 269.99669 * 3 2 1
5 5 H 1.48495 * 109.46996 * 30.00195 * 3 2 1
6 6 H 1.48503 * 109.46933 * 149.99891 * 3 2 1
7 7 C 1.37879 * 119.99965 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00186 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99978 * 0.02562 * 7 2 1
10 10 N 1.46503 * 109.47254 * 180.02562 * 9 7 2
11 11 C 1.46506 * 119.99533 * 269.99989 * 10 9 7
12 12 C 1.50697 * 109.46981 * 282.17908 * 11 10 9
13 13 C 1.34517 * 125.79142 * 83.53699 * 12 11 10
14 14 C 1.41384 * 106.84362 * 180.02562 * 13 12 11
15 15 C 1.34521 * 106.83804 * 0.02562 * 14 13 12
16 16 O 1.34300 * 108.42062 * 359.73494 * 15 14 13
17 17 C 1.34771 * 120.00275 * 89.99182 * 10 9 7
18 18 O 1.21511 * 120.00306 * 6.92532 * 17 10 9
19 19 C 1.48163 * 120.00102 * 186.91554 * 17 10 9
20 20 C 1.39578 * 120.87667 * 312.83739 * 19 17 10
21 21 C 1.39037 * 118.96350 * 180.32011 * 20 19 17
22 22 N 1.39026 * 119.63694 * 179.67804 * 21 20 19
23 23 N 1.32373 * 120.73225 * 359.69747 * 21 20 19
24 24 C 1.31972 * 121.92551 * 0.02562 * 23 21 20
25 25 Cl 1.73609 * 119.51333 * 180.02562 * 24 23 21
26 26 C 1.38170 * 120.96923 * 0.02562 * 24 23 21
27 27 H 0.96996 * 119.99855 * 0.02562 * 1 2 3
28 28 H 1.08995 * 109.47001 * 59.99764 * 9 7 2
29 29 H 1.08997 * 109.46696 * 299.99953 * 9 7 2
30 30 H 1.08997 * 109.47246 * 42.18351 * 11 10 9
31 31 H 1.08996 * 109.46919 * 162.18102 * 11 10 9
32 32 H 1.07999 * 126.57344 * 359.96884 * 13 12 11
33 33 H 1.07996 * 126.58082 * 179.97438 * 14 13 12
34 34 H 1.07999 * 125.78404 * 180.02562 * 15 14 13
35 35 H 1.08000 * 120.51984 * 359.97438 * 20 19 17
36 36 H 0.97003 * 120.00237 * 180.02562 * 22 21 20
37 37 H 0.96996 * 119.99642 * 0.02562 * 22 21 20
38 38 H 1.07995 * 120.42325 * 179.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0017
10 7 2.2030 -3.6127 -0.0015
11 6 2.6799 -4.1689 -1.2702
12 6 1.6192 -5.0647 -1.8563
13 6 0.5703 -4.6621 -2.5961
14 6 -0.1629 -5.8230 -2.9331
15 6 0.4814 -6.8655 -2.3786
16 8 1.5631 -6.4008 -1.7322
17 6 2.6401 -4.1254 1.1658
18 8 2.1525 -3.7516 2.2141
19 6 3.7150 -5.1451 1.1707
20 6 3.6676 -6.2402 0.3066
21 6 4.6943 -7.1767 0.3496
22 7 4.6577 -8.2764 -0.5002
23 7 5.7062 -7.0331 1.1909
24 6 5.7861 -6.0076 2.0178
25 17 7.1419 -5.8811 3.0947
26 6 4.8066 -5.0333 2.0389
27 1 -0.4850 0.8400 -0.0004
28 1 0.6247 -2.5563 -0.8919
29 1 0.6240 -2.5574 0.8880
30 1 2.8944 -3.3570 -1.9650
31 1 3.5874 -4.7467 -1.0953
32 1 0.3333 -3.6468 -2.8777
33 1 -1.0673 -5.8647 -3.5220
34 1 0.1824 -7.9011 -2.4461
35 1 2.8433 -6.3612 -0.3807
36 1 5.3710 -8.9333 -0.4744
37 1 3.9188 -8.3868 -1.1188
38 1 4.8807 -4.1981 2.7195
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000171209368.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:18:51
Heat of formation + Delta-G solvation = 9.903039 kcal
Electronic energy + Delta-G solvation = -26506.426946 eV
Core-core repulsion = 22569.445616 eV
Total energy + Delta-G solvation = -3936.981330 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.082 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-43.54687 -41.85487 -40.31655 -37.85073 -37.13725 -35.66813 -34.98030 -34.05609
-33.53181 -31.62374 -30.35313 -29.48423 -27.03447 -26.14400 -24.71219 -23.89175
-22.66238 -21.71511 -20.84951 -19.11317 -18.85402 -18.77758 -18.07981 -17.46539
-17.36590 -16.98750 -16.71107 -16.40013 -16.17469 -15.95349 -15.67203 -15.62230
-15.08991 -14.50525 -14.34476 -14.09597 -13.89389 -13.59436 -13.32681 -13.25895
-13.14052 -13.00322 -12.65026 -12.55782 -12.37820 -12.25196 -11.82125 -11.68279
-11.37966 -10.89243 -10.81451 -10.64299 -10.61139 -9.79866 -9.41649 -8.98928
-8.23380 -6.37605 -0.40052 -0.01736 0.58610 0.72337 1.39021 1.41741
1.50128 1.54922 1.69460 1.98860 2.17328 2.40403 2.44572 2.58310
3.07519 3.21498 3.68666 3.75918 3.83803 3.98171 4.01646 4.17191
4.23206 4.34628 4.40117 4.53268 4.86819 4.90077 5.03798 5.06516
5.09477 5.19445 5.29572 5.42503 5.62889 5.73871 6.01699 6.09827
6.19394 6.29752 6.41976 6.69822 7.03813 7.06915 7.33568 8.84562
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.008872 B = 0.004924 C = 0.003367
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3155.232126 B = 5685.208434 C = 8314.659570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.014 3.986
3 Si 0.965 3.035
4 H -0.263 1.263
5 H -0.283 1.283
6 H -0.272 1.272
7 C -0.547 4.547
8 H 0.058 0.942
9 C 0.263 3.737
10 N -0.582 5.582
11 C 0.177 3.823
12 C -0.050 4.050
13 C -0.199 4.199
14 C -0.230 4.230
15 C -0.025 4.025
16 O -0.180 6.180
17 C 0.549 3.451
18 O -0.570 6.570
19 C -0.031 4.031
20 C -0.211 4.211
21 C 0.430 3.570
22 N -0.821 5.821
23 N -0.539 5.539
24 C 0.226 3.774
25 Cl -0.014 7.014
26 C -0.181 4.181
27 H 0.268 0.732
28 H 0.035 0.965
29 H 0.002 0.998
30 H 0.114 0.886
31 H 0.117 0.883
32 H 0.136 0.864
33 H 0.166 0.834
34 H 0.250 0.750
35 H 0.168 0.832
36 H 0.417 0.583
37 H 0.425 0.575
38 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.308 -18.795 -7.059 21.728
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.185 4.185
3 Si 0.789 3.211
4 H -0.188 1.188
5 H -0.208 1.208
6 H -0.196 1.196
7 C -0.585 4.585
8 H 0.077 0.923
9 C 0.142 3.858
10 N -0.311 5.311
11 C 0.054 3.946
12 C -0.101 4.101
13 C -0.219 4.219
14 C -0.249 4.249
15 C -0.091 4.091
16 O -0.077 6.077
17 C 0.337 3.663
18 O -0.449 6.449
19 C -0.042 4.042
20 C -0.236 4.236
21 C 0.190 3.810
22 N -0.366 5.366
23 N -0.261 5.261
24 C 0.061 3.939
25 Cl 0.014 6.986
26 C -0.206 4.206
27 H 0.076 0.924
28 H 0.053 0.947
29 H 0.020 0.980
30 H 0.132 0.868
31 H 0.135 0.865
32 H 0.154 0.846
33 H 0.184 0.816
34 H 0.266 0.734
35 H 0.185 0.815
36 H 0.248 0.752
37 H 0.259 0.741
38 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 8.851 -19.224 -6.276 22.075
hybrid contribution -0.853 1.778 0.033 1.973
sum 7.998 -17.446 -6.243 20.182
Atomic orbital electron populations
1.70046 1.07524 1.28218 1.50590 1.25781 0.95702 1.02807 0.94247
0.85449 0.78368 0.78434 0.78804 1.18825 1.20828 1.19636 1.21675
0.93497 0.91508 1.51863 0.92340 1.18883 0.87606 0.82652 0.96621
1.48138 1.44707 1.33418 1.04857 1.20307 0.93484 0.95335 0.85425
1.22633 1.01791 0.81624 1.04031 1.21894 0.96539 1.00778 1.02676
1.22140 1.03889 0.91819 1.07044 1.24932 0.86341 1.01420 0.96426
1.83802 1.42528 1.20993 1.60413 1.18651 0.82479 0.81290 0.83878
1.90747 1.59230 1.62175 1.32763 1.19922 0.93782 0.94947 0.95520
1.22165 1.02615 0.95430 1.03405 1.17922 0.87361 0.87915 0.87829
1.42132 1.30484 1.23326 1.40684 1.66269 1.26522 1.24488 1.08843
1.20944 0.89846 0.90675 0.92396 1.98404 1.42650 1.97098 1.60414
1.21464 0.94319 1.02042 1.02805 0.92353 0.94672 0.98034 0.86839
0.86549 0.84645 0.81644 0.73399 0.81484 0.75153 0.74149 0.83953
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.56 13.29 21.45 0.28 -54.27 16
2 C 0.01 0.80 5.46 84.66 0.46 1.26 16
3 Si 0.97 43.86 29.54 68.60 2.03 45.88 16
4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16
5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
7 C -0.55 -30.54 9.39 25.60 0.24 -30.30 16
8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16
9 C 0.26 13.83 5.18 85.63 0.44 14.28 16
10 N -0.58 -24.84 2.47 -833.57 -2.06 -26.89 16
11 C 0.18 5.69 5.46 85.63 0.47 6.16 16
12 C -0.05 -1.47 6.41 24.83 0.16 -1.31 16
13 C -0.20 -5.96 10.08 22.19 0.22 -5.73 16
14 C -0.23 -5.23 10.91 22.19 0.24 -4.99 16
15 C -0.02 -0.44 12.09 66.97 0.81 0.37 16
16 O -0.18 -4.15 7.97 -2.50 -0.02 -4.17 16
17 C 0.55 24.08 7.30 86.88 0.63 24.71 16
18 O -0.57 -30.29 16.58 -3.75 -0.06 -30.35 16
19 C -0.03 -1.04 5.10 -19.91 -0.10 -1.15 16
20 C -0.21 -5.65 7.30 22.79 0.17 -5.48 16
21 C 0.43 9.81 7.74 133.04 1.03 10.84 16
22 N -0.82 -10.95 9.07 -55.49 -0.50 -11.45 16
23 N -0.54 -14.02 10.34 -184.27 -1.91 -15.92 16
24 C 0.23 6.35 7.27 84.66 0.62 6.96 16
25 Cl -0.01 -0.35 29.10 -2.72 -0.08 -0.43 16
26 C -0.18 -5.84 9.59 22.66 0.22 -5.62 16
27 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16
28 H 0.04 1.86 6.97 -2.39 -0.02 1.84 16
29 H 0.00 0.09 7.34 -2.39 -0.02 0.08 16
30 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16
31 H 0.12 3.20 4.74 -2.39 -0.01 3.19 16
32 H 0.14 4.45 7.77 -2.91 -0.02 4.43 16
33 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16
34 H 0.25 1.75 8.06 -2.91 -0.02 1.72 16
35 H 0.17 4.18 3.32 -2.91 -0.01 4.17 16
36 H 0.42 4.18 8.95 -92.71 -0.83 3.35 16
37 H 0.43 3.75 8.82 -92.71 -0.82 2.94 16
38 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16
Total: -1.00 -74.20 345.30 2.81 -71.39
By element:
Atomic # 1 Polarization: 16.70 SS G_CDS: -0.49 Total: 16.21 kcal
Atomic # 6 Polarization: 4.39 SS G_CDS: 5.61 Total: 10.00 kcal
Atomic # 7 Polarization: -104.36 SS G_CDS: -4.18 Total: -108.54 kcal
Atomic # 8 Polarization: -34.44 SS G_CDS: -0.08 Total: -34.52 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal
Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal
Total: -74.20 2.81 -71.39 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171209368.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.294 kcal
(2) G-P(sol) polarization free energy of solvation -74.197 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.097 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.391 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.903 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds