Wall clock time and date at job start Tue Mar 31 2020 19:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39567 * 120.12267 * 5.92536 * 3 2 1 5 5 C 1.38595 * 119.77750 * 180.29943 * 4 3 2 6 6 N 1.39791 * 119.98387 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00132 * 324.86644 * 6 5 4 8 8 O 1.21377 * 120.00042 * 4.60754 * 7 6 5 9 9 C 1.49356 * 119.99878 * 184.60275 * 7 6 5 10 10 O 1.21357 * 120.00036 * 359.97438 * 9 7 6 11 11 N 1.34770 * 119.99669 * 179.97438 * 9 7 6 12 12 C 1.46497 * 120.00109 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47637 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47495 * 179.97438 * 13 12 11 15 15 C 1.50708 * 109.47386 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99484 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99869 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99536 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00194 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47671 * 90.00044 * 19 17 15 21 21 H 1.48507 * 109.46859 * 209.99819 * 19 17 15 22 22 H 1.48502 * 109.47120 * 329.99498 * 19 17 15 23 23 C 1.39072 * 120.03602 * 359.97402 * 5 4 3 24 24 C 1.38159 * 120.24780 * 0.02562 * 23 5 4 25 25 C 1.38168 * 120.21859 * 0.02562 * 24 23 5 26 26 Cl 1.73605 * 120.01391 * 179.97438 * 25 24 23 27 27 H 1.08006 * 120.11043 * 0.27138 * 4 3 2 28 28 H 0.97001 * 119.99851 * 144.85961 * 6 5 4 29 29 H 0.97005 * 120.00227 * 359.97438 * 11 9 7 30 30 H 1.09005 * 109.46997 * 300.00039 * 12 11 9 31 31 H 1.08993 * 109.47648 * 59.99616 * 12 11 9 32 32 H 1.09005 * 109.46751 * 299.99934 * 13 12 11 33 33 H 1.09001 * 109.47363 * 59.99622 * 13 12 11 34 34 H 1.09005 * 109.47201 * 299.99822 * 14 13 12 35 35 H 1.09001 * 109.47472 * 59.99780 * 14 13 12 36 36 H 0.96996 * 119.99786 * 180.02562 * 18 17 15 37 37 H 1.07997 * 119.87874 * 179.97438 * 23 5 4 38 38 H 1.08003 * 119.88678 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2690 -1.1998 -0.1246 5 6 4.6549 -1.1915 -0.1175 6 7 5.3613 -2.3914 -0.2415 7 6 4.8752 -3.5200 0.3122 8 8 3.7851 -3.5133 0.8459 9 6 5.6779 -4.7788 0.2689 10 8 6.7676 -4.7855 -0.2652 11 7 5.1920 -5.9071 0.8230 12 6 5.9794 -7.1417 0.7811 13 6 5.2052 -8.2644 1.4746 14 6 6.0273 -9.5539 1.4302 15 6 5.2649 -10.6596 2.1139 16 1 4.2915 -10.4621 2.5379 17 6 5.8101 -11.9232 2.1979 18 7 5.1449 -12.8879 2.7950 19 14 7.4940 -12.2645 1.4650 20 1 8.5397 -12.0154 2.4896 21 1 7.5631 -13.6801 1.0214 22 1 7.7180 -11.3696 0.3013 23 6 5.3432 0.0099 0.0129 24 6 4.6506 1.1989 0.1364 25 6 3.2689 1.2026 0.1316 26 17 2.4040 2.6997 0.2877 27 1 2.7332 -2.1321 -0.2258 28 1 6.2014 -2.4118 -0.7261 29 1 4.3211 -5.9016 1.2502 30 1 6.1675 -7.4177 -0.2565 31 1 6.9288 -6.9848 1.2929 32 1 5.0168 -7.9886 2.5122 33 1 4.2559 -8.4214 0.9623 34 1 6.2153 -9.8295 0.3925 35 1 6.9768 -9.3973 1.9423 36 1 5.5286 -13.7768 2.8544 37 1 6.4232 0.0133 0.0186 38 1 5.1910 2.1285 0.2377 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171474678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:55 Heat of formation + Delta-G solvation = -45.938474 kcal Electronic energy + Delta-G solvation = -23950.443757 eV Core-core repulsion = 20011.040957 eV Total energy + Delta-G solvation = -3939.402800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.27900 -40.77819 -39.57740 -37.84762 -37.64828 -37.20123 -35.96101 -35.10530 -33.30485 -32.62753 -31.01492 -29.30280 -26.49903 -25.39748 -24.54465 -23.23468 -22.27446 -21.35901 -20.67055 -19.52667 -18.84193 -18.19682 -17.71683 -17.39146 -17.07048 -16.91204 -16.52679 -16.19289 -15.94959 -15.50855 -15.25839 -15.01242 -14.85892 -14.76444 -14.38390 -14.20568 -13.99149 -13.80477 -13.62409 -13.48473 -13.23530 -12.92386 -12.76734 -12.71207 -12.65052 -12.06129 -11.88863 -11.77136 -11.58920 -11.40840 -11.32164 -10.81405 -10.74425 -10.29322 -10.22154 -9.40374 -8.27396 -6.32053 -0.59993 -0.17722 0.32928 0.88844 1.10248 1.39717 1.41490 1.44824 1.53040 1.69807 2.02394 2.38567 2.40914 2.57984 2.67021 3.08553 3.27371 3.60590 3.89107 4.00450 4.03061 4.10745 4.19973 4.47145 4.49870 4.68913 4.82735 4.88751 4.90459 4.98178 5.03030 5.05891 5.17345 5.47923 5.50944 5.57356 5.66229 5.78166 6.22109 6.25282 6.28968 6.56801 6.76773 6.81140 7.32829 8.89186 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.027693 B = 0.001736 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.830854 B =16122.469287 C =16947.930979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.267 3.733 3 C -0.015 4.015 4 C -0.072 4.072 5 C 0.138 3.862 6 N -0.629 5.629 7 C 0.517 3.483 8 O -0.516 6.516 9 C 0.509 3.491 10 O -0.537 6.537 11 N -0.687 5.687 12 C 0.125 3.875 13 C -0.106 4.106 14 C -0.011 4.011 15 C -0.533 4.533 16 H 0.033 0.967 17 C 0.001 3.999 18 N -0.953 5.953 19 Si 0.951 3.049 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.241 1.241 23 C -0.070 4.070 24 C -0.076 4.076 25 C -0.010 4.010 26 Cl -0.057 7.057 27 H 0.142 0.858 28 H 0.440 0.560 29 H 0.419 0.581 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.188 0.812 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.350 34.555 -8.890 36.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.048 4.048 3 C -0.020 4.020 4 C -0.094 4.094 5 C 0.044 3.956 6 N -0.278 5.278 7 C 0.299 3.701 8 O -0.390 6.390 9 C 0.289 3.711 10 O -0.414 6.414 11 N -0.339 5.339 12 C 0.002 3.998 13 C -0.144 4.144 14 C -0.049 4.049 15 C -0.571 4.571 16 H 0.051 0.949 17 C -0.196 4.196 18 N -0.594 5.594 19 Si 0.775 3.225 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.164 1.164 23 C -0.091 4.091 24 C -0.094 4.094 25 C -0.040 4.040 26 Cl -0.028 7.028 27 H 0.160 0.840 28 H 0.282 0.718 29 H 0.256 0.744 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.205 0.795 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.542 34.429 -8.820 35.717 hybrid contribution 0.197 -0.928 0.103 0.954 sum 3.740 33.501 -8.717 34.818 Atomic orbital electron populations 1.81256 1.13038 1.07950 1.09392 1.25700 0.92806 0.93074 0.93242 1.15590 0.83732 0.93548 1.09090 1.21202 0.93673 0.96974 0.97601 1.17663 0.90145 0.86235 1.01561 1.42984 1.26595 1.05230 1.52950 1.20201 0.86014 0.85125 0.78742 1.90818 1.20574 1.84795 1.42856 1.19860 0.86237 0.84799 0.80168 1.90785 1.21129 1.85329 1.44181 1.45897 1.23106 1.08990 1.55940 1.21565 0.94698 0.81721 1.01831 1.21529 0.99026 0.93475 1.00393 1.19464 0.95936 0.92734 0.96777 1.21501 1.04273 0.94942 1.36418 0.94873 1.26062 1.02236 0.95960 0.95344 1.70078 1.40741 1.02880 1.45662 0.85639 0.79120 0.77590 0.80193 1.19168 1.21416 1.16439 1.21562 1.02878 0.88586 0.96071 1.21214 0.89724 1.00705 0.97801 1.21148 0.93699 0.85640 1.03477 1.98424 1.77040 1.31463 1.95862 0.84026 0.71801 0.74393 0.90649 0.90493 0.91860 0.91952 0.95569 0.95635 0.92590 0.79514 0.79766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.34 18.54 19.00 0.35 -10.99 16 2 C 0.27 5.54 14.37 88.33 1.27 6.81 16 3 C -0.01 -0.22 5.73 -21.34 -0.12 -0.34 16 4 C -0.07 -1.03 8.40 22.68 0.19 -0.84 16 5 C 0.14 1.33 6.29 38.16 0.24 1.57 16 6 N -0.63 -6.70 5.32 -304.92 -1.62 -8.32 16 7 C 0.52 9.10 7.73 87.24 0.67 9.77 16 8 O -0.52 -11.36 13.91 -3.33 -0.05 -11.41 16 9 C 0.51 10.82 7.89 87.24 0.69 11.51 16 10 O -0.54 -13.09 16.48 -3.27 -0.05 -13.15 16 11 N -0.69 -15.60 5.55 -464.53 -2.58 -18.18 16 12 C 0.12 3.31 5.67 86.38 0.49 3.80 16 13 C -0.11 -3.56 5.27 30.59 0.16 -3.40 16 14 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 15 C -0.53 -29.62 9.66 25.60 0.25 -29.37 16 16 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 17 C 0.00 0.03 5.47 84.65 0.46 0.49 16 18 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 19 Si 0.95 42.83 27.47 68.60 1.88 44.71 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 22 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 23 C -0.07 -0.20 9.96 22.45 0.22 0.03 16 24 C -0.08 -0.27 9.81 22.23 0.22 -0.05 16 25 C -0.01 -0.10 6.35 22.62 0.14 0.04 16 26 Cl -0.06 -0.70 28.01 -2.72 -0.08 -0.78 16 27 H 0.14 2.58 6.22 -2.91 -0.02 2.56 16 28 H 0.44 2.72 8.30 -92.71 -0.77 1.95 16 29 H 0.42 8.81 7.94 -92.70 -0.74 8.07 16 30 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.03 1.09 7.20 -2.38 -0.02 1.07 16 35 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.19 -0.79 8.06 -2.91 -0.02 -0.82 16 38 H 0.19 -0.46 8.06 -2.91 -0.02 -0.48 16 Total: -1.00 -74.06 358.83 2.75 -71.31 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -0.41 Total: 5.94 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 5.01 Total: -0.34 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -3.55 Total: -96.29 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.10 Total: -24.56 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -74.06 2.75 -71.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171474678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.372 kcal (2) G-P(sol) polarization free energy of solvation -74.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds