Wall clock time and date at job start Tue Mar 31 2020 19:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39818 * 120.09058 * 38.71830 * 3 2 1 5 5 C 1.37630 * 119.94071 * 179.72191 * 4 3 2 6 6 C 1.39213 * 120.10793 * 0.57394 * 5 4 3 7 7 N 1.39362 * 119.91470 * 179.71871 * 6 5 4 8 8 C 1.34783 * 120.00002 * 33.56178 * 7 6 5 9 9 O 1.21365 * 119.99937 * 5.27307 * 8 7 6 10 10 C 1.49353 * 119.99940 * 185.27845 * 8 7 6 11 11 O 1.21360 * 119.99755 * 0.02562 * 10 8 7 12 12 N 1.34770 * 119.99797 * 179.97438 * 10 8 7 13 13 C 1.46506 * 120.00139 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47237 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47017 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47367 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99844 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00220 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99895 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99931 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47266 * 59.99651 * 20 18 16 22 22 H 1.48501 * 109.47287 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47243 * 299.99633 * 20 18 16 24 24 C 1.39074 * 120.16804 * 359.69997 * 6 5 4 25 25 C 1.37863 * 120.06266 * 0.02562 * 24 6 5 26 26 Cl 1.73599 * 120.05130 * 180.02562 * 25 24 6 27 27 H 1.07998 * 120.02661 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.94649 * 180.27435 * 5 4 3 29 29 H 0.96998 * 120.00134 * 213.56220 * 7 6 5 30 30 H 0.97001 * 120.00294 * 0.02562 * 12 10 8 31 31 H 1.09004 * 109.46778 * 300.00561 * 13 12 10 32 32 H 1.09002 * 109.46874 * 60.00118 * 13 12 10 33 33 H 1.09004 * 109.47096 * 299.99634 * 14 13 12 34 34 H 1.08997 * 109.47256 * 60.00032 * 14 13 12 35 35 H 1.09004 * 109.46689 * 299.99639 * 15 14 13 36 36 H 1.09002 * 109.47183 * 59.99331 * 15 14 13 37 37 H 0.97004 * 119.99870 * 180.02562 * 19 18 16 38 38 H 1.08000 * 119.96792 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.9429 -0.7567 5 6 4.6457 -0.9359 -0.7590 6 6 5.3405 0.0016 0.0003 7 7 6.7341 0.0013 -0.0004 8 6 7.4074 -0.3484 -1.1144 9 8 6.8039 -0.5702 -2.1437 10 6 8.8962 -0.4630 -1.0820 11 8 9.4996 -0.2417 -0.0526 12 7 9.5694 -0.8131 -2.1958 13 6 11.0298 -0.9251 -2.1643 14 6 11.5401 -1.3325 -3.5480 15 6 13.0652 -1.4500 -3.5149 16 6 13.5678 -1.8520 -4.8775 17 1 12.8692 -2.0085 -5.6862 18 6 14.9194 -2.0200 -5.0919 19 7 15.7701 -1.8289 -4.1073 20 14 15.5424 -2.5175 -6.7812 21 1 15.1461 -1.4900 -7.7774 22 1 17.0228 -2.6305 -6.7494 23 1 14.9536 -3.8272 -7.1600 24 6 4.6474 0.9386 0.7591 25 6 3.2688 0.9414 0.7621 26 17 2.4039 2.1116 1.7089 27 1 2.7317 -1.6740 -1.3421 28 1 5.1876 -1.6619 -1.3469 29 1 7.2196 0.2528 0.8009 30 1 9.0871 -0.9904 -3.0186 31 1 11.4620 0.0364 -1.8867 32 1 11.3207 -1.6790 -1.4329 33 1 11.1080 -2.2939 -3.8260 34 1 11.2492 -0.5783 -4.2791 35 1 13.4977 -0.4889 -3.2367 36 1 13.3558 -2.2044 -2.7837 37 1 16.7210 -1.9468 -4.2582 38 1 5.1897 1.6646 1.3466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171592294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:53 Heat of formation + Delta-G solvation = -27.812506 kcal Electronic energy + Delta-G solvation = -23780.473308 eV Core-core repulsion = 19841.856508 eV Total energy + Delta-G solvation = -3938.616799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57946 -40.04660 -38.78626 -37.22192 -37.00330 -36.00256 -35.18236 -33.43687 -31.69140 -31.37398 -30.88860 -27.48496 -25.74541 -23.86168 -23.77065 -22.49024 -20.96125 -20.43638 -19.72318 -19.03530 -18.14877 -16.87074 -16.60767 -16.43625 -16.05261 -15.48801 -15.38399 -15.00271 -14.80765 -14.76396 -14.51257 -14.31976 -14.04215 -13.79569 -13.40210 -13.29415 -12.97662 -12.53568 -12.37107 -12.18607 -11.99349 -11.92581 -11.88906 -11.65563 -10.98148 -10.94347 -10.85583 -10.68618 -10.06665 -9.99056 -9.61087 -9.50634 -9.21775 -9.18628 -8.92068 -8.43006 -6.07920 -4.11339 -0.12120 0.45675 1.05250 1.28924 1.91095 2.17400 2.32418 2.88445 3.16735 3.20957 3.28671 3.32577 3.33814 3.35916 4.00431 4.14887 4.34416 4.39703 4.53524 4.55941 4.90794 5.09500 5.28148 5.36811 5.44633 5.47651 5.54247 5.56640 5.95829 5.99136 6.05553 6.39300 6.43068 6.61022 6.85547 6.98100 7.03933 7.32962 7.54564 7.65618 7.76714 7.89787 8.30440 8.94784 9.53378 11.03168 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.032745 B = 0.001600 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.900187 B =17497.589425 C =18127.807704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.253 3.747 3 C -0.038 4.038 4 C -0.033 4.033 5 C -0.120 4.120 6 C 0.195 3.805 7 N -0.648 5.648 8 C 0.513 3.487 9 O -0.490 6.490 10 C 0.503 3.497 11 O -0.519 6.519 12 N -0.686 5.686 13 C 0.113 3.887 14 C -0.123 4.123 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.136 4.136 25 C 0.027 3.973 26 Cl -0.044 7.044 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.430 0.570 30 H 0.412 0.588 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.513 4.640 11.643 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.063 4.063 3 C -0.043 4.043 4 C -0.055 4.055 5 C -0.140 4.140 6 C 0.098 3.902 7 N -0.295 5.295 8 C 0.295 3.705 9 O -0.362 6.362 10 C 0.282 3.718 11 O -0.396 6.396 12 N -0.338 5.338 13 C -0.009 4.009 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.158 4.158 25 C -0.003 4.003 26 Cl -0.015 7.015 27 H 0.167 0.833 28 H 0.172 0.828 29 H 0.269 0.731 30 H 0.249 0.751 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -26.030 4.715 11.735 28.940 hybrid contribution 0.878 -0.048 -0.791 1.183 sum -25.152 4.666 10.944 27.824 Atomic orbital electron populations 1.81262 1.11704 1.07145 1.07504 1.25321 0.92293 0.94360 0.94327 1.15825 0.84933 1.00033 1.03521 1.21067 0.93446 0.95823 0.95132 1.21250 0.93697 0.98581 1.00479 1.17725 0.82671 0.93470 0.96369 1.43181 1.04290 1.66034 1.16041 1.20665 0.89492 0.77090 0.83207 1.90806 1.69820 1.45401 1.30174 1.19623 0.86889 0.80108 0.85201 1.90807 1.69157 1.48921 1.30668 1.46089 1.09610 1.65837 1.12216 1.21922 0.75616 1.02441 1.00915 1.21942 1.01038 1.00594 0.92545 1.19030 0.87062 0.97650 0.97563 1.21150 0.92029 1.47055 0.96120 0.92610 1.25018 0.97047 0.95383 0.96916 1.69947 1.02517 1.49240 1.31496 0.86632 0.77666 0.79128 0.84411 1.20223 1.21253 1.20218 1.20691 0.91680 0.99671 1.03710 1.20574 0.91856 0.92434 0.95430 1.98429 1.76239 1.56579 1.70261 0.83252 0.82806 0.73102 0.75150 0.90828 0.90810 0.92348 0.92344 0.96165 0.96166 0.92822 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.32 18.54 41.84 0.78 -3.55 16 2 C 0.25 2.16 14.38 -22.47 -0.32 1.84 16 3 C -0.04 -0.25 5.74 -106.76 -0.61 -0.87 16 4 C -0.03 -0.18 9.75 -39.21 -0.38 -0.56 16 5 C -0.12 -0.76 8.62 -39.44 -0.34 -1.10 16 6 C 0.19 1.24 6.27 -83.76 -0.53 0.72 16 7 N -0.65 -4.47 5.30 -10.28 -0.05 -4.53 16 8 C 0.51 4.88 7.61 -11.63 -0.09 4.79 16 9 O -0.49 -5.29 14.15 5.48 0.08 -5.22 16 10 C 0.50 5.92 7.89 -11.63 -0.09 5.83 16 11 O -0.52 -7.23 16.48 5.49 0.09 -7.14 16 12 N -0.69 -8.41 5.55 -60.76 -0.34 -8.75 16 13 C 0.11 1.69 5.67 -4.04 -0.02 1.67 16 14 C -0.12 -2.18 5.27 -26.73 -0.14 -2.32 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 16 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 17 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 20 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 C -0.14 -0.73 9.72 -39.41 -0.38 -1.11 16 25 C 0.03 0.17 6.34 -39.10 -0.25 -0.08 16 26 Cl -0.04 -0.31 28.02 -51.86 -1.45 -1.76 16 27 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 28 H 0.15 1.05 6.41 -52.49 -0.34 0.71 16 29 H 0.43 2.29 8.29 -40.82 -0.34 1.95 16 30 H 0.41 4.47 7.94 -40.82 -0.32 4.14 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -31.54 362.66 -7.35 -38.89 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.92 Total: -0.50 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -3.71 Total: -3.63 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.12 Total: -41.96 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.17 Total: -12.36 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.45 Total: -1.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.54 -7.35 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171592294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.082 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds