Wall clock time and date at job start Tue Mar 31 2020 19:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39818 * 120.09058 * 38.71830 * 3 2 1 5 5 C 1.37630 * 119.94071 * 179.72191 * 4 3 2 6 6 C 1.39213 * 120.10793 * 0.57394 * 5 4 3 7 7 N 1.39362 * 119.91470 * 179.71871 * 6 5 4 8 8 C 1.34783 * 120.00002 * 33.56178 * 7 6 5 9 9 O 1.21365 * 119.99937 * 5.27307 * 8 7 6 10 10 C 1.49353 * 119.99940 * 185.27845 * 8 7 6 11 11 O 1.21360 * 119.99755 * 0.02562 * 10 8 7 12 12 N 1.34770 * 119.99797 * 179.97438 * 10 8 7 13 13 C 1.46506 * 120.00139 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47237 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47017 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47367 * 179.97438 * 15 14 13 17 17 H 1.08008 * 119.99844 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00220 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99895 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99931 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47266 * 59.99651 * 20 18 16 22 22 H 1.48501 * 109.47287 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47243 * 299.99633 * 20 18 16 24 24 C 1.39074 * 120.16804 * 359.69997 * 6 5 4 25 25 C 1.37863 * 120.06266 * 0.02562 * 24 6 5 26 26 Cl 1.73599 * 120.05130 * 180.02562 * 25 24 6 27 27 H 1.07998 * 120.02661 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.94649 * 180.27435 * 5 4 3 29 29 H 0.96998 * 120.00134 * 213.56220 * 7 6 5 30 30 H 0.97001 * 120.00294 * 0.02562 * 12 10 8 31 31 H 1.09004 * 109.46778 * 300.00561 * 13 12 10 32 32 H 1.09002 * 109.46874 * 60.00118 * 13 12 10 33 33 H 1.09004 * 109.47096 * 299.99634 * 14 13 12 34 34 H 1.08997 * 109.47256 * 60.00032 * 14 13 12 35 35 H 1.09004 * 109.46689 * 299.99639 * 15 14 13 36 36 H 1.09002 * 109.47183 * 59.99331 * 15 14 13 37 37 H 0.97004 * 119.99870 * 180.02562 * 19 18 16 38 38 H 1.08000 * 119.96792 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.9429 -0.7567 5 6 4.6457 -0.9359 -0.7590 6 6 5.3405 0.0016 0.0003 7 7 6.7341 0.0013 -0.0004 8 6 7.4074 -0.3484 -1.1144 9 8 6.8039 -0.5702 -2.1437 10 6 8.8962 -0.4630 -1.0820 11 8 9.4996 -0.2417 -0.0526 12 7 9.5694 -0.8131 -2.1958 13 6 11.0298 -0.9251 -2.1643 14 6 11.5401 -1.3325 -3.5480 15 6 13.0652 -1.4500 -3.5149 16 6 13.5678 -1.8520 -4.8775 17 1 12.8692 -2.0085 -5.6862 18 6 14.9194 -2.0200 -5.0919 19 7 15.7701 -1.8289 -4.1073 20 14 15.5424 -2.5175 -6.7812 21 1 15.1461 -1.4900 -7.7774 22 1 17.0228 -2.6305 -6.7494 23 1 14.9536 -3.8272 -7.1600 24 6 4.6474 0.9386 0.7591 25 6 3.2688 0.9414 0.7621 26 17 2.4039 2.1116 1.7089 27 1 2.7317 -1.6740 -1.3421 28 1 5.1876 -1.6619 -1.3469 29 1 7.2196 0.2528 0.8009 30 1 9.0871 -0.9904 -3.0186 31 1 11.4620 0.0364 -1.8867 32 1 11.3207 -1.6790 -1.4329 33 1 11.1080 -2.2939 -3.8260 34 1 11.2492 -0.5783 -4.2791 35 1 13.4977 -0.4889 -3.2367 36 1 13.3558 -2.2044 -2.7837 37 1 16.7210 -1.9468 -4.2582 38 1 5.1897 1.6646 1.3466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171592294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:52 Heat of formation + Delta-G solvation = -48.078990 kcal Electronic energy + Delta-G solvation = -23781.352128 eV Core-core repulsion = 19841.856508 eV Total energy + Delta-G solvation = -3939.495620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.30106 -40.77575 -39.60447 -37.82288 -37.66087 -37.16386 -36.01761 -35.14650 -33.03493 -32.16415 -31.48522 -28.99293 -26.81265 -25.07681 -24.29431 -23.57106 -22.33967 -21.40467 -20.27414 -19.89713 -18.89099 -18.41200 -17.67593 -17.38445 -16.88525 -16.53451 -16.29244 -16.19686 -15.83127 -15.47680 -15.40014 -15.12435 -14.91874 -14.71683 -14.24437 -14.10043 -13.95953 -13.75871 -13.60088 -13.48720 -13.11624 -12.87729 -12.71159 -12.59239 -12.50605 -12.41337 -12.17069 -11.65672 -11.59910 -11.50540 -11.22359 -10.80152 -10.51546 -10.29037 -10.07059 -9.48609 -8.17079 -6.27586 -0.69152 -0.00525 0.25904 0.74873 1.14769 1.44424 1.46192 1.51141 1.54067 1.69665 2.05286 2.40507 2.46922 2.61111 2.71069 3.17131 3.25579 3.59123 3.86344 4.01241 4.06025 4.11716 4.23129 4.46085 4.56921 4.63227 4.86556 4.89307 4.96164 5.01154 5.02782 5.19252 5.24590 5.47342 5.54937 5.74884 5.76012 5.87766 6.20581 6.27014 6.32993 6.54020 6.82909 6.89690 7.41813 8.94283 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.032745 B = 0.001600 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.900187 B =17497.589425 C =18127.807704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.273 3.727 3 C -0.044 4.044 4 C -0.022 4.022 5 C -0.124 4.124 6 C 0.187 3.813 7 N -0.634 5.634 8 C 0.524 3.476 9 O -0.502 6.502 10 C 0.506 3.494 11 O -0.541 6.541 12 N -0.682 5.682 13 C 0.127 3.873 14 C -0.107 4.107 15 C 0.024 3.976 16 C -0.543 4.543 17 H 0.064 0.936 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.287 1.287 23 H -0.267 1.267 24 C -0.124 4.124 25 C 0.024 3.976 26 Cl -0.050 7.050 27 H 0.170 0.830 28 H 0.152 0.848 29 H 0.438 0.562 30 H 0.421 0.579 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.067 0.933 35 H -0.004 1.004 36 H -0.003 1.003 37 H 0.263 0.737 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.542 4.539 10.967 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.042 4.042 3 C -0.049 4.049 4 C -0.043 4.043 5 C -0.144 4.144 6 C 0.091 3.909 7 N -0.281 5.281 8 C 0.306 3.694 9 O -0.375 6.375 10 C 0.286 3.714 11 O -0.419 6.419 12 N -0.335 5.335 13 C 0.004 3.996 14 C -0.145 4.145 15 C -0.014 4.014 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.145 4.145 25 C -0.006 4.006 26 Cl -0.021 7.021 27 H 0.188 0.812 28 H 0.170 0.830 29 H 0.279 0.721 30 H 0.259 0.741 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.071 0.929 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -27.103 4.620 11.069 29.639 hybrid contribution 1.191 -0.003 -0.518 1.298 sum -25.913 4.617 10.552 28.357 Atomic orbital electron populations 1.81280 1.12977 1.08658 1.09082 1.25548 0.92510 0.93086 0.93053 1.15901 0.83939 1.00790 1.04312 1.21221 0.93099 0.95508 0.94429 1.21307 0.94012 0.98615 1.00454 1.17807 0.82170 0.94012 0.96926 1.43021 1.04596 1.64976 1.15552 1.20057 0.88141 0.77492 0.83726 1.90815 1.69549 1.46426 1.30753 1.19946 0.87979 0.79059 0.84404 1.90801 1.69991 1.49698 1.31401 1.45854 1.08393 1.66151 1.13075 1.21495 0.77392 1.01770 0.98933 1.21640 0.96766 1.01588 0.94462 1.18942 0.91267 0.95436 0.95772 1.21670 0.92518 1.46409 0.97490 0.91738 1.25945 0.97511 0.95489 1.00873 1.70085 1.02759 1.50611 1.33760 0.85540 0.76892 0.79185 0.79649 1.19244 1.21237 1.19190 1.20803 0.91213 0.99438 1.03033 1.20626 0.92187 0.92324 0.95461 1.98433 1.76424 1.56828 1.70433 0.81219 0.83019 0.72096 0.74082 0.91542 0.91464 0.91332 0.91413 0.98517 0.98476 0.92867 0.80963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.41 18.54 19.00 0.35 -9.05 16 2 C 0.27 4.40 14.38 88.33 1.27 5.67 16 3 C -0.04 -0.51 5.74 -21.25 -0.12 -0.63 16 4 C -0.02 -0.19 9.75 22.51 0.22 0.03 16 5 C -0.12 -1.30 8.62 22.36 0.19 -1.10 16 6 C 0.19 1.95 6.27 38.38 0.24 2.19 16 7 N -0.63 -7.34 5.30 -304.79 -1.62 -8.96 16 8 C 0.52 8.94 7.61 87.24 0.66 9.60 16 9 O -0.50 -9.80 14.15 -3.29 -0.05 -9.84 16 10 C 0.51 11.18 7.89 87.24 0.69 11.87 16 11 O -0.54 -14.48 16.48 -3.28 -0.05 -14.54 16 12 N -0.68 -15.79 5.55 -464.50 -2.58 -18.37 16 13 C 0.13 3.75 5.67 86.38 0.49 4.24 16 14 C -0.11 -3.70 5.27 30.59 0.16 -3.54 16 15 C 0.02 1.14 4.97 29.85 0.15 1.29 16 16 C -0.54 -29.07 9.11 25.60 0.23 -28.84 16 17 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 19 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 20 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 C -0.12 -1.03 9.72 22.38 0.22 -0.81 16 25 C 0.02 0.26 6.34 22.58 0.14 0.40 16 26 Cl -0.05 -0.63 28.02 -2.72 -0.08 -0.71 16 27 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 28 H 0.15 1.74 6.41 -2.91 -0.02 1.73 16 29 H 0.44 3.69 8.29 -92.71 -0.77 2.92 16 30 H 0.42 8.34 7.94 -92.71 -0.74 7.60 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -67.86 362.66 2.94 -64.92 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -0.36 Total: 5.77 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 5.01 Total: 0.82 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -3.56 Total: -91.01 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.10 Total: -24.38 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -67.86 2.94 -64.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171592294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.838 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds