Wall clock time and date at job start Tue Mar 31 2020 18:57:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13603 * 1
3 3 C 1.47203 * 179.97438 * 2 1
4 4 N 1.46498 * 109.46874 * 315.26334 * 3 2 1
5 5 C 1.37100 * 119.99815 * 263.94461 * 4 3 2
6 6 H 1.08004 * 119.99619 * 201.29851 * 5 4 3
7 7 C 1.38945 * 120.00351 * 21.29684 * 5 4 3
8 8 N 1.31417 * 119.99640 * 17.39317 * 7 5 4
9 9 Si 1.86801 * 120.00335 * 197.39335 * 7 5 4
10 10 H 1.48505 * 109.46983 * 89.99936 * 9 7 5
11 11 H 1.48501 * 109.46982 * 209.99684 * 9 7 5
12 12 H 1.48496 * 109.46788 * 330.00081 * 9 7 5
13 13 C 1.34778 * 120.00433 * 83.94475 * 4 3 2
14 14 O 1.21294 * 120.00268 * 179.97438 * 13 4 3
15 15 C 1.50703 * 119.99722 * 359.97438 * 13 4 3
16 16 N 1.46896 * 109.47093 * 174.65262 * 15 13 4
17 17 C 1.46761 * 111.00034 * 289.20167 * 16 15 13
18 18 C 1.53416 * 108.61564 * 285.45994 * 17 16 15
19 19 O 1.43140 * 107.90054 * 296.77896 * 18 17 16
20 20 C 1.36171 * 116.72141 * 45.17340 * 19 18 17
21 21 C 1.38775 * 118.73086 * 164.85086 * 20 19 18
22 22 C 1.38174 * 120.21968 * 179.69065 * 21 20 19
23 23 C 1.38357 * 120.01302 * 0.31416 * 22 21 20
24 24 Cl 1.73607 * 119.95405 * 180.09066 * 23 22 21
25 25 C 1.38162 * 120.09317 * 0.11131 * 23 22 21
26 26 C 1.38966 * 121.37032 * 345.29963 * 20 19 18
27 27 H 1.08990 * 109.47224 * 195.25962 * 3 2 1
28 28 H 1.08999 * 109.46966 * 75.25548 * 3 2 1
29 29 H 0.96995 * 120.00108 * 180.02562 * 8 7 5
30 30 H 1.09003 * 109.47200 * 54.65274 * 15 13 4
31 31 H 1.08998 * 109.46787 * 294.65139 * 15 13 4
32 32 H 1.09001 * 109.60749 * 45.19541 * 17 16 15
33 33 H 1.08992 * 109.61392 * 165.71151 * 17 16 15
34 34 H 1.08994 * 109.77905 * 56.37853 * 18 17 16
35 35 H 1.08998 * 109.77296 * 177.18097 * 18 17 16
36 36 H 1.08000 * 119.88641 * 359.96953 * 21 20 19
37 37 H 1.07996 * 119.99089 * 180.29150 * 22 21 20
38 38 H 1.07996 * 119.88516 * 179.97438 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6081 0.0007 0.0000
4 7 3.0968 -0.9803 0.9722
5 6 3.4431 -0.5785 2.2364
6 1 4.1067 -1.1866 2.8334
7 6 2.9407 0.6109 2.7495
8 7 1.8918 1.1750 2.1939
9 14 3.7559 1.4082 4.2291
10 1 4.8134 2.3432 3.7676
11 1 2.7393 2.1575 5.0104
12 1 4.3632 0.3579 5.0853
13 6 3.2059 -2.2777 0.6238
14 8 3.6110 -3.0897 1.4286
15 6 2.8246 -2.7194 -0.7656
16 7 3.1520 -4.1414 -0.9345
17 6 4.6044 -4.3428 -0.9983
18 6 5.1041 -3.8723 -2.3704
19 8 4.4994 -4.7026 -3.3673
20 6 3.1663 -4.9466 -3.2346
21 6 2.4720 -5.4656 -4.3183
22 6 1.1199 -5.7308 -4.2156
23 6 0.4520 -5.4730 -3.0316
24 17 -1.2464 -5.8090 -2.9035
25 6 1.1348 -4.9481 -1.9513
26 6 2.4964 -4.6781 -2.0471
27 1 2.9709 0.9922 0.2704
28 1 2.9715 -0.2607 -0.9938
29 1 1.5412 2.0056 2.5518
30 1 3.3760 -2.1301 -1.4984
31 1 1.7546 -2.5730 -0.9125
32 1 5.0890 -3.7619 -0.2136
33 1 4.8332 -5.4004 -0.8684
34 1 4.8162 -2.8335 -2.5315
35 1 6.1889 -3.9670 -2.4201
36 1 2.9913 -5.6670 -5.2436
37 1 0.5842 -6.1390 -5.0598
38 1 0.6101 -4.7477 -1.0288
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000172729432.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:57:39
Heat of formation + Delta-G solvation = 10.395026 kcal
Electronic energy + Delta-G solvation = -26594.359960 eV
Core-core repulsion = 22657.399964 eV
Total energy + Delta-G solvation = -3936.959996 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.082 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.30577 -38.96143 -37.88130 -36.51681 -36.19208 -35.58369 -34.33656 -31.98594
-30.85181 -30.48030 -29.04994 -27.53722 -26.25457 -24.50913 -24.13429 -22.61661
-20.61556 -19.14813 -18.20610 -17.99752 -17.04691 -17.00642 -16.47288 -16.39071
-15.48171 -14.92586 -14.90520 -14.74566 -14.39045 -14.10256 -13.96571 -13.62094
-13.36076 -13.23328 -13.08253 -12.80858 -12.26994 -12.18208 -11.99020 -11.86373
-11.74799 -11.54021 -11.29512 -11.18549 -11.12894 -10.91323 -10.69407 -10.63913
-10.46480 -10.40350 -9.66017 -9.33998 -8.68264 -8.34387 -8.11420 -7.92169
-6.56733 -4.12077 1.06170 1.12826 2.10185 3.04113 3.10105 3.16561
3.20513 3.34822 3.44918 3.61846 3.77864 3.91116 4.06024 4.40549
4.63225 4.76461 4.82218 4.85340 4.91648 5.03431 5.08578 5.14701
5.20850 5.29827 5.35564 5.56688 5.67214 5.75995 5.77242 5.93800
5.97408 6.08299 6.12754 6.31255 6.40140 6.76939 6.97649 7.33025
7.39096 7.81524 8.18718 8.68166 8.90414 9.08798 9.61963 10.49127
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.014755 B = 0.003699 C = 0.003209
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1897.233255 B = 7567.047911 C = 8723.448726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.467 5.467
2 C 0.242 3.758
3 C 0.221 3.779
4 N -0.442 5.442
5 C -0.312 4.312
6 H 0.108 0.892
7 C 0.033 3.967
8 N -0.879 5.879
9 Si 0.931 3.069
10 H -0.275 1.275
11 H -0.285 1.285
12 H -0.269 1.269
13 C 0.457 3.543
14 O -0.550 6.550
15 C 0.041 3.959
16 N -0.463 5.463
17 C 0.021 3.979
18 C 0.017 3.983
19 O -0.308 6.308
20 C 0.091 3.909
21 C -0.122 4.122
22 C -0.094 4.094
23 C -0.051 4.051
24 Cl -0.072 7.072
25 C -0.076 4.076
26 C 0.050 3.950
27 H 0.128 0.872
28 H 0.079 0.921
29 H 0.274 0.726
30 H 0.061 0.939
31 H 0.097 0.903
32 H 0.115 0.885
33 H 0.093 0.907
34 H 0.069 0.931
35 H 0.117 0.883
36 H 0.139 0.861
37 H 0.138 0.862
38 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.348 -7.478 -13.795 16.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.147 5.147
2 C -0.076 4.076
3 C 0.094 3.906
4 N -0.164 5.164
5 C -0.439 4.439
6 H 0.126 0.874
7 C -0.171 4.171
8 N -0.518 5.518
9 Si 0.757 3.243
10 H -0.201 1.201
11 H -0.210 1.210
12 H -0.193 1.193
13 C 0.244 3.756
14 O -0.431 6.431
15 C -0.088 4.088
16 N -0.178 5.178
17 C -0.107 4.107
18 C -0.060 4.060
19 O -0.222 6.222
20 C 0.043 3.957
21 C -0.141 4.141
22 C -0.114 4.114
23 C -0.079 4.079
24 Cl -0.043 7.043
25 C -0.096 4.096
26 C -0.048 4.048
27 H 0.146 0.854
28 H 0.097 0.903
29 H 0.085 0.915
30 H 0.079 0.921
31 H 0.116 0.884
32 H 0.133 0.867
33 H 0.112 0.888
34 H 0.088 0.912
35 H 0.135 0.865
36 H 0.157 0.843
37 H 0.156 0.844
38 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 2.618 -8.017 -12.980 15.479
hybrid contribution 0.613 1.112 0.465 1.352
sum 3.231 -6.904 -12.516 14.654
Atomic orbital electron populations
1.80916 1.13517 1.09334 1.10960 1.29237 0.95327 0.92220 0.90832
1.18712 0.81809 0.98042 0.92060 1.43624 1.56855 1.04046 1.11848
1.19707 1.27031 1.05929 0.91263 0.87403 1.25330 0.94747 0.97866
0.99148 1.69774 1.19584 1.19966 1.42498 0.85842 0.78674 0.79174
0.80597 1.20130 1.21026 1.19296 1.19830 0.84525 0.82470 0.88750
1.90571 1.49111 1.51018 1.52388 1.22296 1.02745 0.86198 0.97566
1.58549 1.09089 1.15693 1.34512 1.23019 0.86500 1.04319 0.96839
1.23711 0.99412 0.93881 0.88966 1.86285 1.18925 1.66484 1.50461
1.19083 0.84420 0.99756 0.92467 1.20326 0.93034 1.03231 0.97551
1.20757 0.93393 1.00554 0.96650 1.20565 0.85585 1.05731 0.95970
1.98366 1.13593 1.94010 1.98308 1.20772 0.92592 0.97895 0.98389
1.18660 0.93532 1.04328 0.88264 0.85396 0.90310 0.91499 0.92105
0.88440 0.86652 0.88823 0.91241 0.86464 0.84338 0.84440 0.84078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.47 -10.85 18.54 42.16 0.78 -10.07 16
2 C 0.24 5.15 12.98 -20.76 -0.27 4.89 16
3 C 0.22 4.12 4.91 -6.83 -0.03 4.08 16
4 N -0.44 -9.65 2.60 -117.94 -0.31 -9.95 16
5 C -0.31 -7.62 9.28 -14.93 -0.14 -7.76 16
6 H 0.11 2.77 7.42 -52.48 -0.39 2.38 16
7 C 0.03 0.78 4.94 -17.47 -0.09 0.69 16
8 N -0.88 -21.49 9.37 55.50 0.52 -20.97 16
9 Si 0.93 19.02 29.59 -169.99 -5.03 13.99 16
10 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16
11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16
12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16
13 C 0.46 9.62 7.02 -10.98 -0.08 9.54 16
14 O -0.55 -13.42 14.84 5.55 0.08 -13.34 16
15 C 0.04 0.67 3.98 -4.98 -0.02 0.65 16
16 N -0.46 -7.45 4.22 -172.19 -0.73 -8.18 16
17 C 0.02 0.29 5.65 -3.68 -0.02 0.26 16
18 C 0.02 0.19 7.07 37.37 0.26 0.45 16
19 O -0.31 -3.90 10.40 -20.29 -0.21 -4.11 16
20 C 0.09 1.21 6.47 -39.11 -0.25 0.95 16
21 C -0.12 -1.36 9.94 -39.41 -0.39 -1.75 16
22 C -0.09 -1.02 9.83 -39.56 -0.39 -1.41 16
23 C -0.05 -0.65 6.31 -39.57 -0.25 -0.90 16
24 Cl -0.07 -0.88 28.95 -51.86 -1.50 -2.38 16
25 C -0.08 -1.10 9.07 -39.27 -0.36 -1.46 16
26 C 0.05 0.73 5.11 -83.60 -0.43 0.31 16
27 H 0.13 2.43 6.58 -51.93 -0.34 2.09 16
28 H 0.08 1.09 6.55 -51.93 -0.34 0.75 16
29 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16
30 H 0.06 0.84 5.43 -51.93 -0.28 0.56 16
31 H 0.10 1.68 7.14 -51.93 -0.37 1.31 16
32 H 0.12 1.74 6.44 -51.93 -0.33 1.40 16
33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16
34 H 0.07 0.74 6.57 -51.93 -0.34 0.40 16
35 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16
36 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16
37 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16
38 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16
LS Contribution 337.27 15.07 5.08 5.08
Total: -1.00 -29.92 337.27 -7.40 -37.32
By element:
Atomic # 1 Polarization: 7.70 SS G_CDS: -3.65 Total: 4.05 kcal
Atomic # 6 Polarization: 10.99 SS G_CDS: -2.45 Total: 8.55 kcal
Atomic # 7 Polarization: -49.43 SS G_CDS: 0.27 Total: -49.16 kcal
Atomic # 8 Polarization: -17.32 SS G_CDS: -0.13 Total: -17.45 kcal
Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal
Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -29.92 -7.40 -37.32 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000172729432.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.716 kcal
(2) G-P(sol) polarization free energy of solvation -29.917 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.799 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.395 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds