Wall clock time and date at job start Tue Mar 31 2020 18:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46874 * 315.26334 * 3 2 1 5 5 C 1.37100 * 119.99815 * 263.94461 * 4 3 2 6 6 H 1.08004 * 119.99619 * 201.29851 * 5 4 3 7 7 C 1.38945 * 120.00351 * 21.29684 * 5 4 3 8 8 N 1.31417 * 119.99640 * 17.39317 * 7 5 4 9 9 Si 1.86801 * 120.00335 * 197.39335 * 7 5 4 10 10 H 1.48505 * 109.46983 * 89.99936 * 9 7 5 11 11 H 1.48501 * 109.46982 * 209.99684 * 9 7 5 12 12 H 1.48496 * 109.46788 * 330.00081 * 9 7 5 13 13 C 1.34778 * 120.00433 * 83.94475 * 4 3 2 14 14 O 1.21294 * 120.00268 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99722 * 359.97438 * 13 4 3 16 16 N 1.46896 * 109.47093 * 174.65262 * 15 13 4 17 17 C 1.46761 * 111.00034 * 289.20167 * 16 15 13 18 18 C 1.53416 * 108.61564 * 285.45994 * 17 16 15 19 19 O 1.43140 * 107.90054 * 296.77896 * 18 17 16 20 20 C 1.36171 * 116.72141 * 45.17340 * 19 18 17 21 21 C 1.38775 * 118.73086 * 164.85086 * 20 19 18 22 22 C 1.38174 * 120.21968 * 179.69065 * 21 20 19 23 23 C 1.38357 * 120.01302 * 0.31416 * 22 21 20 24 24 Cl 1.73607 * 119.95405 * 180.09066 * 23 22 21 25 25 C 1.38162 * 120.09317 * 0.11131 * 23 22 21 26 26 C 1.38966 * 121.37032 * 345.29963 * 20 19 18 27 27 H 1.08990 * 109.47224 * 195.25962 * 3 2 1 28 28 H 1.08999 * 109.46966 * 75.25548 * 3 2 1 29 29 H 0.96995 * 120.00108 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.47200 * 54.65274 * 15 13 4 31 31 H 1.08998 * 109.46787 * 294.65139 * 15 13 4 32 32 H 1.09001 * 109.60749 * 45.19541 * 17 16 15 33 33 H 1.08992 * 109.61392 * 165.71151 * 17 16 15 34 34 H 1.08994 * 109.77905 * 56.37853 * 18 17 16 35 35 H 1.08998 * 109.77296 * 177.18097 * 18 17 16 36 36 H 1.08000 * 119.88641 * 359.96953 * 21 20 19 37 37 H 1.07996 * 119.99089 * 180.29150 * 22 21 20 38 38 H 1.07996 * 119.88516 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0968 -0.9803 0.9722 5 6 3.4431 -0.5785 2.2364 6 1 4.1067 -1.1866 2.8334 7 6 2.9407 0.6109 2.7495 8 7 1.8918 1.1750 2.1939 9 14 3.7559 1.4082 4.2291 10 1 4.8134 2.3432 3.7676 11 1 2.7393 2.1575 5.0104 12 1 4.3632 0.3579 5.0853 13 6 3.2059 -2.2777 0.6238 14 8 3.6110 -3.0897 1.4286 15 6 2.8246 -2.7194 -0.7656 16 7 3.1520 -4.1414 -0.9345 17 6 4.6044 -4.3428 -0.9983 18 6 5.1041 -3.8723 -2.3704 19 8 4.4994 -4.7026 -3.3673 20 6 3.1663 -4.9466 -3.2346 21 6 2.4720 -5.4656 -4.3183 22 6 1.1199 -5.7308 -4.2156 23 6 0.4520 -5.4730 -3.0316 24 17 -1.2464 -5.8090 -2.9035 25 6 1.1348 -4.9481 -1.9513 26 6 2.4964 -4.6781 -2.0471 27 1 2.9709 0.9922 0.2704 28 1 2.9715 -0.2607 -0.9938 29 1 1.5412 2.0056 2.5518 30 1 3.3760 -2.1301 -1.4984 31 1 1.7546 -2.5730 -0.9125 32 1 5.0890 -3.7619 -0.2136 33 1 4.8332 -5.4004 -0.8684 34 1 4.8162 -2.8335 -2.5315 35 1 6.1889 -3.9670 -2.4201 36 1 2.9913 -5.6670 -5.2436 37 1 0.5842 -6.1390 -5.0598 38 1 0.6101 -4.7477 -1.0288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172729432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:39 Heat of formation + Delta-G solvation = 10.395026 kcal Electronic energy + Delta-G solvation = -26594.359960 eV Core-core repulsion = 22657.399964 eV Total energy + Delta-G solvation = -3936.959996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.30577 -38.96143 -37.88130 -36.51681 -36.19208 -35.58369 -34.33656 -31.98594 -30.85181 -30.48030 -29.04994 -27.53722 -26.25457 -24.50913 -24.13429 -22.61661 -20.61556 -19.14813 -18.20610 -17.99752 -17.04691 -17.00642 -16.47288 -16.39071 -15.48171 -14.92586 -14.90520 -14.74566 -14.39045 -14.10256 -13.96571 -13.62094 -13.36076 -13.23328 -13.08253 -12.80858 -12.26994 -12.18208 -11.99020 -11.86373 -11.74799 -11.54021 -11.29512 -11.18549 -11.12894 -10.91323 -10.69407 -10.63913 -10.46480 -10.40350 -9.66017 -9.33998 -8.68264 -8.34387 -8.11420 -7.92169 -6.56733 -4.12077 1.06170 1.12826 2.10185 3.04113 3.10105 3.16561 3.20513 3.34822 3.44918 3.61846 3.77864 3.91116 4.06024 4.40549 4.63225 4.76461 4.82218 4.85340 4.91648 5.03431 5.08578 5.14701 5.20850 5.29827 5.35564 5.56688 5.67214 5.75995 5.77242 5.93800 5.97408 6.08299 6.12754 6.31255 6.40140 6.76939 6.97649 7.33025 7.39096 7.81524 8.18718 8.68166 8.90414 9.08798 9.61963 10.49127 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.003699 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.233255 B = 7567.047911 C = 8723.448726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.242 3.758 3 C 0.221 3.779 4 N -0.442 5.442 5 C -0.312 4.312 6 H 0.108 0.892 7 C 0.033 3.967 8 N -0.879 5.879 9 Si 0.931 3.069 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.457 3.543 14 O -0.550 6.550 15 C 0.041 3.959 16 N -0.463 5.463 17 C 0.021 3.979 18 C 0.017 3.983 19 O -0.308 6.308 20 C 0.091 3.909 21 C -0.122 4.122 22 C -0.094 4.094 23 C -0.051 4.051 24 Cl -0.072 7.072 25 C -0.076 4.076 26 C 0.050 3.950 27 H 0.128 0.872 28 H 0.079 0.921 29 H 0.274 0.726 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.348 -7.478 -13.795 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.076 4.076 3 C 0.094 3.906 4 N -0.164 5.164 5 C -0.439 4.439 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.518 5.518 9 Si 0.757 3.243 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.244 3.756 14 O -0.431 6.431 15 C -0.088 4.088 16 N -0.178 5.178 17 C -0.107 4.107 18 C -0.060 4.060 19 O -0.222 6.222 20 C 0.043 3.957 21 C -0.141 4.141 22 C -0.114 4.114 23 C -0.079 4.079 24 Cl -0.043 7.043 25 C -0.096 4.096 26 C -0.048 4.048 27 H 0.146 0.854 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.618 -8.017 -12.980 15.479 hybrid contribution 0.613 1.112 0.465 1.352 sum 3.231 -6.904 -12.516 14.654 Atomic orbital electron populations 1.80916 1.13517 1.09334 1.10960 1.29237 0.95327 0.92220 0.90832 1.18712 0.81809 0.98042 0.92060 1.43624 1.56855 1.04046 1.11848 1.19707 1.27031 1.05929 0.91263 0.87403 1.25330 0.94747 0.97866 0.99148 1.69774 1.19584 1.19966 1.42498 0.85842 0.78674 0.79174 0.80597 1.20130 1.21026 1.19296 1.19830 0.84525 0.82470 0.88750 1.90571 1.49111 1.51018 1.52388 1.22296 1.02745 0.86198 0.97566 1.58549 1.09089 1.15693 1.34512 1.23019 0.86500 1.04319 0.96839 1.23711 0.99412 0.93881 0.88966 1.86285 1.18925 1.66484 1.50461 1.19083 0.84420 0.99756 0.92467 1.20326 0.93034 1.03231 0.97551 1.20757 0.93393 1.00554 0.96650 1.20565 0.85585 1.05731 0.95970 1.98366 1.13593 1.94010 1.98308 1.20772 0.92592 0.97895 0.98389 1.18660 0.93532 1.04328 0.88264 0.85396 0.90310 0.91499 0.92105 0.88440 0.86652 0.88823 0.91241 0.86464 0.84338 0.84440 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.85 18.54 42.16 0.78 -10.07 16 2 C 0.24 5.15 12.98 -20.76 -0.27 4.89 16 3 C 0.22 4.12 4.91 -6.83 -0.03 4.08 16 4 N -0.44 -9.65 2.60 -117.94 -0.31 -9.95 16 5 C -0.31 -7.62 9.28 -14.93 -0.14 -7.76 16 6 H 0.11 2.77 7.42 -52.48 -0.39 2.38 16 7 C 0.03 0.78 4.94 -17.47 -0.09 0.69 16 8 N -0.88 -21.49 9.37 55.50 0.52 -20.97 16 9 Si 0.93 19.02 29.59 -169.99 -5.03 13.99 16 10 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 C 0.46 9.62 7.02 -10.98 -0.08 9.54 16 14 O -0.55 -13.42 14.84 5.55 0.08 -13.34 16 15 C 0.04 0.67 3.98 -4.98 -0.02 0.65 16 16 N -0.46 -7.45 4.22 -172.19 -0.73 -8.18 16 17 C 0.02 0.29 5.65 -3.68 -0.02 0.26 16 18 C 0.02 0.19 7.07 37.37 0.26 0.45 16 19 O -0.31 -3.90 10.40 -20.29 -0.21 -4.11 16 20 C 0.09 1.21 6.47 -39.11 -0.25 0.95 16 21 C -0.12 -1.36 9.94 -39.41 -0.39 -1.75 16 22 C -0.09 -1.02 9.83 -39.56 -0.39 -1.41 16 23 C -0.05 -0.65 6.31 -39.57 -0.25 -0.90 16 24 Cl -0.07 -0.88 28.95 -51.86 -1.50 -2.38 16 25 C -0.08 -1.10 9.07 -39.27 -0.36 -1.46 16 26 C 0.05 0.73 5.11 -83.60 -0.43 0.31 16 27 H 0.13 2.43 6.58 -51.93 -0.34 2.09 16 28 H 0.08 1.09 6.55 -51.93 -0.34 0.75 16 29 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 30 H 0.06 0.84 5.43 -51.93 -0.28 0.56 16 31 H 0.10 1.68 7.14 -51.93 -0.37 1.31 16 32 H 0.12 1.74 6.44 -51.93 -0.33 1.40 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 0.74 6.57 -51.93 -0.34 0.40 16 35 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -29.92 337.27 -7.40 -37.32 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -3.65 Total: 4.05 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -2.45 Total: 8.55 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.27 Total: -49.16 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.13 Total: -17.45 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.92 -7.40 -37.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172729432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.716 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds