Wall clock time and date at job start Tue Mar 31 2020 19:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47381 * 31.11037 * 3 2 1 5 5 C 1.36913 * 119.99836 * 89.28923 * 4 3 2 6 6 H 1.07998 * 119.99510 * 162.86181 * 5 4 3 7 7 C 1.39018 * 119.99750 * 342.86828 * 5 4 3 8 8 N 1.31377 * 120.00150 * 330.31617 * 7 5 4 9 9 Si 1.86802 * 119.99965 * 150.32466 * 7 5 4 10 10 H 1.48502 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47338 * 119.99278 * 9 7 5 12 12 H 1.48504 * 109.47151 * 239.99852 * 9 7 5 13 13 C 1.34773 * 120.00356 * 269.29334 * 4 3 2 14 14 O 1.21621 * 119.99839 * 184.17873 * 13 4 3 15 15 C 1.47511 * 119.99890 * 4.16665 * 13 4 3 16 16 C 1.39616 * 120.50540 * 299.88342 * 15 13 4 17 17 N 1.31641 * 120.63986 * 179.97438 * 16 15 13 18 18 C 1.32409 * 121.82049 * 359.97438 * 17 16 15 19 19 O 1.35533 * 119.52259 * 179.97438 * 18 17 16 20 20 C 1.42903 * 116.99853 * 359.97438 * 19 18 17 21 21 C 1.53003 * 109.46826 * 180.02562 * 20 19 18 22 22 C 1.52995 * 117.49816 * 243.74861 * 21 20 19 23 23 C 1.53000 * 117.50030 * 175.08765 * 21 20 19 24 24 C 1.39240 * 120.95374 * 359.97438 * 18 17 16 25 25 Cl 1.73605 * 120.37882 * 180.02562 * 24 18 17 26 26 C 1.38073 * 119.24513 * 359.80590 * 24 18 17 27 27 H 1.09003 * 109.46743 * 151.11909 * 3 2 1 28 28 H 1.09000 * 109.47012 * 271.11255 * 3 2 1 29 29 H 0.97005 * 120.00200 * 179.97438 * 8 7 5 30 30 H 1.07998 * 119.67900 * 359.97438 * 16 15 13 31 31 H 1.08999 * 109.47045 * 300.00097 * 20 19 18 32 32 H 1.08999 * 109.46830 * 60.00412 * 20 19 18 33 33 H 1.09004 * 115.54636 * 29.41614 * 21 20 19 34 34 H 1.09005 * 117.49928 * 359.97438 * 22 21 20 35 35 H 1.08999 * 117.49971 * 145.02022 * 22 21 20 36 36 H 1.08996 * 117.50109 * 214.97911 * 23 21 20 37 37 H 1.09006 * 117.49253 * 359.97438 * 23 21 20 38 38 H 1.08005 * 120.83076 * 180.23802 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0970 -1.1816 -0.7136 5 6 3.3113 -1.1257 -2.0647 6 1 3.9193 -1.8770 -2.5465 7 6 2.7464 -0.1016 -2.8162 8 7 1.6104 0.4401 -2.4393 9 14 3.6025 0.5041 -4.3621 10 1 4.8570 -0.2637 -4.5664 11 1 2.7077 0.3112 -5.5314 12 1 3.9237 1.9468 -4.2171 13 6 3.3357 -2.3244 -0.0402 14 8 3.8132 -3.2822 -0.6180 15 6 3.0182 -2.4133 1.3976 16 6 3.6276 -1.5526 2.3125 17 7 3.3458 -1.6294 3.5961 18 6 2.4826 -2.5147 4.0697 19 8 2.2276 -2.5532 5.4002 20 6 2.9243 -1.6140 6.2217 21 6 2.5104 -1.8083 7.6819 22 6 1.7833 -0.6513 8.3699 23 6 3.2341 -0.9714 8.7386 24 6 1.8330 -3.4067 3.2205 25 17 0.7034 -4.5609 3.8574 26 6 2.0941 -3.3598 1.8654 27 1 2.9709 0.9007 -0.4964 28 1 2.9714 -0.0191 1.0275 29 1 1.2164 1.1550 -2.9635 30 1 4.3371 -0.8168 1.9638 31 1 3.9982 -1.7729 6.1246 32 1 2.6767 -0.6008 5.9053 33 1 2.2171 -2.8216 7.9565 34 1 1.6001 0.2484 7.7825 35 1 1.0119 -0.9033 9.0976 36 1 3.4165 -1.4338 9.7086 37 1 4.0053 -0.2826 8.3936 38 1 1.6018 -4.0370 1.1831 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182751873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:03 Heat of formation + Delta-G solvation = 14.517395 kcal Electronic energy + Delta-G solvation = -25732.960732 eV Core-core repulsion = 21796.179495 eV Total energy + Delta-G solvation = -3936.781237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07250 -40.63634 -39.21372 -37.71154 -37.69378 -37.58150 -36.13539 -33.99318 -33.57074 -31.88658 -29.28553 -28.69312 -27.05592 -25.03257 -24.68936 -23.24319 -21.63588 -21.57008 -19.89196 -19.76043 -18.73076 -18.59077 -17.87063 -17.36240 -16.97397 -16.54909 -16.19319 -16.10710 -15.58717 -15.26480 -15.11147 -14.79449 -14.73391 -14.55653 -14.35235 -13.90760 -13.88197 -13.46402 -13.15242 -13.13137 -12.90919 -12.64750 -12.40116 -12.35618 -12.30735 -12.18958 -12.13658 -12.03824 -11.44059 -11.23724 -11.18154 -10.96755 -10.86445 -10.51493 -10.02828 -9.53836 -8.49506 -5.98152 -0.36668 -0.17109 0.85781 1.35499 1.52145 1.64731 1.68041 1.72432 1.97966 2.26029 2.36095 2.40204 2.85802 2.90261 2.95895 3.06478 3.50983 3.54835 3.64776 3.69866 3.89716 3.95366 4.05078 4.13668 4.27862 4.34297 4.39758 4.55116 4.60790 4.68025 4.80674 4.82496 4.95737 5.03091 5.23453 5.26456 5.46421 5.93176 5.99977 6.30172 6.42148 7.00557 7.05991 7.23555 7.78851 8.53181 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016453 B = 0.003154 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.357429 B = 8875.037774 C = 9414.781595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.253 3.747 3 C 0.217 3.783 4 N -0.432 5.432 5 C -0.349 4.349 6 H 0.091 0.909 7 C 0.015 3.985 8 N -0.873 5.873 9 Si 0.985 3.015 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.261 1.261 13 C 0.496 3.504 14 O -0.606 6.606 15 C -0.189 4.189 16 C 0.173 3.827 17 N -0.515 5.515 18 C 0.340 3.660 19 O -0.296 6.296 20 C 0.098 3.902 21 C -0.174 4.174 22 C -0.179 4.179 23 C -0.153 4.153 24 C -0.114 4.114 25 Cl -0.037 7.037 26 C -0.003 4.003 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.278 0.722 30 H 0.208 0.792 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 1.712 19.028 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.065 4.065 3 C 0.090 3.910 4 N -0.150 5.150 5 C -0.476 4.476 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.509 5.509 9 Si 0.808 3.192 10 H -0.190 1.190 11 H -0.217 1.217 12 H -0.185 1.185 13 C 0.286 3.714 14 O -0.491 6.491 15 C -0.195 4.195 16 C 0.016 3.984 17 N -0.239 5.239 18 C 0.160 3.840 19 O -0.202 6.202 20 C 0.023 3.977 21 C -0.192 4.192 22 C -0.215 4.215 23 C -0.190 4.190 24 C -0.144 4.144 25 Cl -0.008 7.008 26 C -0.030 4.030 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.088 0.912 30 H 0.224 0.776 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.181 1.708 19.502 19.833 hybrid contribution -0.169 -0.522 -1.832 1.912 sum 3.012 1.187 17.670 17.964 Atomic orbital electron populations 1.80862 1.14739 1.09151 1.13349 1.29484 0.95733 0.92082 0.89224 1.19204 0.80742 0.91802 0.99229 1.43737 1.55224 1.08312 1.07692 1.19636 1.31506 1.13675 0.82776 0.89166 1.25957 0.94066 0.96947 1.02039 1.69957 1.13574 1.25346 1.41998 0.85023 0.78486 0.78816 0.76836 1.19041 1.21728 1.18526 1.17983 0.84492 0.82599 0.86354 1.90649 1.49815 1.37890 1.70774 1.20818 1.02422 1.00877 0.95350 1.23189 0.94873 0.94756 0.85579 1.67592 1.17075 1.22261 1.16945 1.19615 0.89691 0.89391 0.85324 1.86249 1.64184 1.57286 1.12476 1.22408 0.96442 0.91473 0.87357 1.22128 1.07825 0.98373 0.90913 1.23204 0.96111 0.98737 1.03485 1.23104 0.95383 1.01792 0.98740 1.20627 1.01992 0.99193 0.92560 1.98361 1.58839 1.57153 1.86434 1.21337 0.93360 0.95383 0.92916 0.85563 0.85183 0.91197 0.77568 0.90410 0.90924 0.87003 0.88475 0.87744 0.86895 0.87605 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.71 18.54 20.01 0.37 -23.34 16 2 C 0.25 10.85 12.98 89.44 1.16 12.01 16 3 C 0.22 7.83 4.97 84.58 0.42 8.25 16 4 N -0.43 -18.93 2.58 -649.07 -1.67 -20.60 16 5 C -0.35 -17.15 9.27 84.09 0.78 -16.37 16 6 H 0.09 4.82 7.42 -2.91 -0.02 4.79 16 7 C 0.01 0.69 4.66 84.95 0.40 1.09 16 8 N -0.87 -42.04 9.65 21.68 0.21 -41.83 16 9 Si 0.98 37.49 29.64 68.60 2.03 39.53 16 10 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 11 H -0.29 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 13 C 0.50 21.68 7.10 86.69 0.62 22.29 16 14 O -0.61 -31.48 16.74 -4.10 -0.07 -31.55 16 15 C -0.19 -6.56 4.97 -20.00 -0.10 -6.66 16 16 C 0.17 4.74 8.83 85.05 0.75 5.49 16 17 N -0.51 -13.76 9.18 -307.65 -2.82 -16.58 16 18 C 0.34 9.68 7.49 84.85 0.64 10.32 16 19 O -0.30 -7.57 9.57 -88.38 -0.85 -8.41 16 20 C 0.10 1.91 5.58 71.98 0.40 2.31 16 21 C -0.17 -2.75 6.05 -10.79 -0.07 -2.81 16 22 C -0.18 -2.36 10.18 30.62 0.31 -2.04 16 23 C -0.15 -1.72 10.25 30.62 0.31 -1.40 16 24 C -0.11 -3.49 6.35 22.47 0.14 -3.35 16 25 Cl -0.04 -1.02 28.52 -2.72 -0.08 -1.10 16 26 C 0.00 -0.12 9.73 22.73 0.22 0.10 16 27 H 0.13 4.38 7.09 -2.39 -0.02 4.36 16 28 H 0.13 3.53 4.39 -2.39 -0.01 3.52 16 29 H 0.28 12.88 8.31 -92.70 -0.77 12.11 16 30 H 0.21 4.22 7.27 -2.91 -0.02 4.20 16 31 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 32 H 0.07 1.40 7.83 -2.39 -0.02 1.38 16 33 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.10 1.29 8.03 -2.38 -0.02 1.27 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -64.54 353.23 4.23 -60.30 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.12 Total: 14.36 kcal Atomic # 6 Polarization: 23.23 SS G_CDS: 5.99 Total: 29.22 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -3.92 Total: -102.35 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.91 Total: -39.96 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.53 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -64.54 4.23 -60.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182751873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.822 kcal (2) G-P(sol) polarization free energy of solvation -64.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds