Wall clock time and date at job start Tue Mar 31 2020 18:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36566 * 119.77396 * 2 1 4 4 S 1.76199 * 118.46923 * 359.97438 * 3 2 1 5 5 C 1.81005 * 100.00210 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46878 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46675 * 179.97438 * 6 5 4 8 8 H 1.08006 * 120.00341 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99864 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00249 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99960 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47070 * 60.00244 * 11 9 7 13 13 H 1.48501 * 109.46908 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47375 * 300.00082 * 11 9 7 15 15 N 1.31019 * 123.06666 * 180.02562 * 3 2 1 16 16 C 1.34820 * 121.61043 * 359.95155 * 15 3 2 17 17 C 1.39810 * 121.60914 * 180.02562 * 16 15 3 18 18 C 1.36623 * 119.66324 * 179.97438 * 17 16 15 19 19 N 1.48016 * 119.51529 * 179.97438 * 18 17 16 20 20 O 1.21799 * 119.99951 * 0.02562 * 19 18 17 21 21 O 1.21802 * 120.00022 * 179.72377 * 19 18 17 22 22 C 1.38906 * 120.97184 * 0.26282 * 18 17 16 23 23 C 1.36759 * 120.73136 * 359.47370 * 22 18 17 24 24 C 1.39421 * 119.51345 * 0.51370 * 23 22 18 25 25 C 1.35339 * 119.76814 * 179.97438 * 2 1 3 26 26 O 1.21730 * 121.25726 * 0.02676 * 25 2 1 27 27 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47272 * 300.02954 * 1 2 3 29 29 H 1.08999 * 109.46963 * 60.02314 * 1 2 3 30 30 H 1.09000 * 109.47148 * 300.00035 * 5 4 3 31 31 H 1.08990 * 109.46752 * 60.00263 * 5 4 3 32 32 H 1.09000 * 109.47200 * 299.99930 * 6 5 4 33 33 H 1.09004 * 109.47198 * 60.00327 * 6 5 4 34 34 H 0.96993 * 120.00326 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.16752 * 359.96154 * 17 16 15 36 36 H 1.08002 * 119.63192 * 179.72255 * 22 18 17 37 37 H 1.07998 * 120.24416 * 180.26063 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1432 1.1854 0.0000 4 16 1.2158 2.6836 -0.0007 5 6 2.5660 3.8891 -0.0012 6 6 1.9857 5.3048 -0.0012 7 6 3.1098 6.3084 -0.0011 8 1 4.1356 5.9703 -0.0014 9 6 2.8289 7.6582 -0.0016 10 7 1.5798 8.0700 -0.0017 11 14 4.2223 8.9023 -0.0021 12 1 5.0577 8.7093 -1.2145 13 1 3.6591 10.2764 -0.0019 14 1 5.0579 8.7103 1.2104 15 7 3.4512 1.2606 -0.0005 16 6 4.2226 0.1549 -0.0001 17 6 5.6184 0.2353 -0.0001 18 6 6.3617 -0.9111 0.0009 19 7 7.8391 -0.8222 0.0003 20 8 8.3837 0.2672 -0.0005 21 8 8.5104 -1.8386 0.0063 22 6 5.7512 -2.1588 -0.0036 23 6 4.3881 -2.2700 0.0017 24 6 3.6050 -1.1165 0.0009 25 6 2.1369 -1.1748 0.0005 26 8 1.5473 -2.2397 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5143 0.8897 29 1 -0.3633 0.5135 -0.8902 30 1 3.1792 3.7482 0.8888 31 1 3.1791 3.7473 -0.8911 32 1 1.3722 5.4460 -0.8911 33 1 1.3727 5.4462 0.8890 34 1 1.3822 9.0195 -0.0017 35 1 6.1066 1.1987 -0.0010 36 1 6.3598 -3.0510 -0.0072 37 1 3.9218 -3.2441 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185750438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:47 Heat of formation + Delta-G solvation = 10.604741 kcal Electronic energy + Delta-G solvation = -25185.810127 eV Core-core repulsion = 21250.902931 eV Total energy + Delta-G solvation = -3934.907196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.51062 -41.89913 -39.16746 -37.93084 -36.78373 -35.01508 -33.88859 -32.51952 -31.23903 -30.69536 -28.66637 -26.65402 -25.77484 -25.33198 -23.51270 -22.72119 -21.55607 -20.31300 -19.47587 -18.86552 -18.25502 -17.76291 -17.74441 -16.84855 -16.72207 -15.96481 -15.84195 -15.55814 -14.65845 -14.61293 -14.25856 -14.14831 -13.97537 -13.79935 -13.66071 -12.99492 -12.66430 -12.62840 -12.32584 -11.95444 -11.77325 -11.46378 -11.32596 -11.13235 -10.93946 -10.71313 -10.62812 -10.50734 -10.45961 -10.35835 -10.13281 -9.84530 -9.35815 -9.03243 -8.55776 -7.84921 -6.20645 -4.25798 -0.71794 -0.03525 0.77372 0.85032 1.08408 1.58158 1.96406 2.10067 2.40777 3.25059 3.28556 3.29746 3.32911 3.55754 3.71414 4.01618 4.22687 4.32228 4.39747 4.56156 4.72718 4.91278 5.11019 5.12419 5.16202 5.27410 5.36745 5.42276 5.52327 5.69509 5.76270 5.94715 6.03625 6.13679 6.45537 7.13410 7.25041 7.29072 7.33881 7.40334 7.74168 8.08258 8.78511 9.39836 10.90058 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.003475 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.416759 B = 8054.675125 C =10870.341793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.528 5.528 3 C 0.383 3.617 4 S -0.004 6.004 5 C -0.080 4.080 6 C 0.034 3.966 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.899 3.101 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.274 1.274 15 N -0.532 5.532 16 C 0.194 3.806 17 C -0.050 4.050 18 C 0.010 3.990 19 N 0.022 4.978 20 O -0.146 6.146 21 O -0.153 6.153 22 C -0.108 4.108 23 C -0.024 4.024 24 C -0.181 4.181 25 C 0.556 3.444 26 O -0.503 6.503 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.171 0.829 36 H 0.160 0.840 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -19.119 -0.003 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.252 5.252 3 C 0.012 3.988 4 S 0.236 5.764 5 C -0.228 4.228 6 C -0.005 4.005 7 C -0.562 4.562 8 H 0.080 0.920 9 C -0.141 4.141 10 N -0.530 5.530 11 Si 0.726 3.274 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.200 1.200 15 N -0.260 5.260 16 C 0.076 3.924 17 C -0.072 4.072 18 C -0.074 4.074 19 N 0.544 4.456 20 O -0.364 6.364 21 O -0.369 6.369 22 C -0.129 4.129 23 C -0.044 4.044 24 C -0.190 4.190 25 C 0.347 3.653 26 O -0.377 6.377 27 H 0.124 0.876 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.189 0.811 36 H 0.177 0.823 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.952 -18.780 -0.010 18.881 hybrid contribution 2.053 -0.141 0.001 2.057 sum 0.100 -18.921 -0.009 18.921 Atomic orbital electron populations 1.22331 0.75498 1.06264 1.05029 1.46364 1.10357 1.05454 1.62979 1.25633 0.91766 0.91856 0.89539 1.86252 1.13562 0.90858 1.85730 1.24241 0.95750 0.96187 1.06608 1.19031 0.97227 0.85605 0.98651 1.20974 0.92498 0.90340 1.52385 0.91985 1.24996 0.95809 0.98546 0.94704 1.69934 1.17792 1.15650 1.49610 0.86536 0.81924 0.79981 0.78935 1.19968 1.21154 1.19972 1.69101 1.00810 1.27879 1.28174 1.18331 0.92691 0.87878 0.93537 1.20432 0.91462 0.99217 0.96068 1.20844 0.79744 0.96489 1.10330 1.43632 1.03429 1.00649 0.97848 1.94597 1.73776 1.15474 1.52589 1.94534 1.63437 1.26024 1.52947 1.20601 0.95107 0.96257 1.00885 1.20686 0.91563 0.98570 0.93575 1.20879 0.93319 0.95390 1.09393 1.18154 0.87258 0.83211 0.76673 1.90877 1.70297 1.27669 1.48861 0.87564 0.88994 0.88994 0.88876 0.88877 0.95356 0.95355 0.92548 0.81111 0.82289 0.82425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.43 9.47 59.85 0.57 1.00 16 2 N -0.53 -6.24 3.02 -124.82 -0.38 -6.62 16 3 C 0.38 5.09 7.78 -88.53 -0.69 4.40 16 4 S 0.00 -0.05 20.49 -107.50 -2.20 -2.25 16 5 C -0.08 -1.41 4.72 37.16 0.18 -1.24 16 6 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 7 C -0.52 -13.38 9.11 -34.44 -0.31 -13.70 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -24.82 13.29 55.43 0.74 -24.09 16 11 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 N -0.53 -7.62 8.95 -10.91 -0.10 -7.72 16 16 C 0.19 2.53 6.62 -84.78 -0.56 1.97 16 17 C -0.05 -0.61 9.48 -39.58 -0.38 -0.99 16 18 C 0.01 0.11 6.81 -80.28 -0.55 -0.44 16 19 N 0.02 0.29 4.45 33.80 0.15 0.44 16 20 O -0.15 -2.08 18.38 -29.46 -0.54 -2.62 16 21 O -0.15 -1.98 18.40 -29.46 -0.54 -2.53 16 22 C -0.11 -1.01 9.47 -39.87 -0.38 -1.39 16 23 C -0.02 -0.23 9.63 -39.68 -0.38 -0.61 16 24 C -0.18 -2.17 5.90 -104.76 -0.62 -2.79 16 25 C 0.56 7.03 7.66 -12.49 -0.10 6.94 16 26 O -0.50 -6.91 16.06 5.16 0.08 -6.83 16 27 H 0.11 0.86 6.95 -51.93 -0.36 0.50 16 28 H 0.09 0.68 7.96 -51.93 -0.41 0.26 16 29 H 0.09 0.68 7.96 -51.93 -0.41 0.26 16 30 H 0.09 1.65 8.10 -51.92 -0.42 1.23 16 31 H 0.09 1.65 8.09 -51.92 -0.42 1.23 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.17 2.06 7.55 -52.49 -0.40 1.67 16 36 H 0.16 1.15 7.56 -52.49 -0.40 0.75 16 37 H 0.16 1.22 7.82 -52.49 -0.41 0.80 16 LS Contribution 345.31 15.07 5.20 5.20 Total: -1.00 -29.12 345.31 -9.68 -38.80 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.62 Total: -2.49 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -3.45 Total: -4.66 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.41 Total: -37.98 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -1.00 Total: -11.98 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.20 Total: -2.25 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.12 -9.68 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185750438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.407 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds