Wall clock time and date at job start Tue Mar 31 2020 18:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36566 * 119.77396 * 2 1 4 4 S 1.76199 * 118.46923 * 359.97438 * 3 2 1 5 5 C 1.81005 * 100.00210 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46878 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46675 * 179.97438 * 6 5 4 8 8 H 1.08006 * 120.00341 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99864 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00249 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99960 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47070 * 60.00244 * 11 9 7 13 13 H 1.48501 * 109.46908 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47375 * 300.00082 * 11 9 7 15 15 N 1.31019 * 123.06666 * 180.02562 * 3 2 1 16 16 C 1.34820 * 121.61043 * 359.95155 * 15 3 2 17 17 C 1.39810 * 121.60914 * 180.02562 * 16 15 3 18 18 C 1.36623 * 119.66324 * 179.97438 * 17 16 15 19 19 N 1.48016 * 119.51529 * 179.97438 * 18 17 16 20 20 O 1.21799 * 119.99951 * 0.02562 * 19 18 17 21 21 O 1.21802 * 120.00022 * 179.72377 * 19 18 17 22 22 C 1.38906 * 120.97184 * 0.26282 * 18 17 16 23 23 C 1.36759 * 120.73136 * 359.47370 * 22 18 17 24 24 C 1.39421 * 119.51345 * 0.51370 * 23 22 18 25 25 C 1.35339 * 119.76814 * 179.97438 * 2 1 3 26 26 O 1.21730 * 121.25726 * 0.02676 * 25 2 1 27 27 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47272 * 300.02954 * 1 2 3 29 29 H 1.08999 * 109.46963 * 60.02314 * 1 2 3 30 30 H 1.09000 * 109.47148 * 300.00035 * 5 4 3 31 31 H 1.08990 * 109.46752 * 60.00263 * 5 4 3 32 32 H 1.09000 * 109.47200 * 299.99930 * 6 5 4 33 33 H 1.09004 * 109.47198 * 60.00327 * 6 5 4 34 34 H 0.96993 * 120.00326 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.16752 * 359.96154 * 17 16 15 36 36 H 1.08002 * 119.63192 * 179.72255 * 22 18 17 37 37 H 1.07998 * 120.24416 * 180.26063 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1432 1.1854 0.0000 4 16 1.2158 2.6836 -0.0007 5 6 2.5660 3.8891 -0.0012 6 6 1.9857 5.3048 -0.0012 7 6 3.1098 6.3084 -0.0011 8 1 4.1356 5.9703 -0.0014 9 6 2.8289 7.6582 -0.0016 10 7 1.5798 8.0700 -0.0017 11 14 4.2223 8.9023 -0.0021 12 1 5.0577 8.7093 -1.2145 13 1 3.6591 10.2764 -0.0019 14 1 5.0579 8.7103 1.2104 15 7 3.4512 1.2606 -0.0005 16 6 4.2226 0.1549 -0.0001 17 6 5.6184 0.2353 -0.0001 18 6 6.3617 -0.9111 0.0009 19 7 7.8391 -0.8222 0.0003 20 8 8.3837 0.2672 -0.0005 21 8 8.5104 -1.8386 0.0063 22 6 5.7512 -2.1588 -0.0036 23 6 4.3881 -2.2700 0.0017 24 6 3.6050 -1.1165 0.0009 25 6 2.1369 -1.1748 0.0005 26 8 1.5473 -2.2397 0.0005 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5143 0.8897 29 1 -0.3633 0.5135 -0.8902 30 1 3.1792 3.7482 0.8888 31 1 3.1791 3.7473 -0.8911 32 1 1.3722 5.4460 -0.8911 33 1 1.3727 5.4462 0.8890 34 1 1.3822 9.0195 -0.0017 35 1 6.1066 1.1987 -0.0010 36 1 6.3598 -3.0510 -0.0072 37 1 3.9218 -3.2441 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185750438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:46 Heat of formation + Delta-G solvation = -3.525926 kcal Electronic energy + Delta-G solvation = -25186.422879 eV Core-core repulsion = 21250.902931 eV Total energy + Delta-G solvation = -3935.519948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.49955 -42.86888 -40.09504 -38.91416 -37.81217 -36.04672 -35.67139 -33.43302 -32.96925 -31.74396 -29.52544 -27.58884 -27.36660 -26.54370 -24.49196 -23.67769 -23.17238 -21.35984 -20.41627 -19.85080 -19.31357 -18.76366 -18.67653 -18.64871 -17.79215 -16.94914 -16.85771 -16.51444 -16.45634 -15.69433 -15.49524 -15.32790 -15.00844 -14.76265 -14.71052 -14.12148 -13.74114 -13.63466 -13.54979 -13.46412 -12.91754 -12.81890 -12.55475 -12.49553 -12.38289 -12.20715 -12.04353 -11.80385 -11.59613 -11.48985 -11.35326 -11.19231 -11.03839 -10.57824 -10.02980 -8.92216 -8.22684 -6.33523 -1.68115 -0.98782 -0.25373 -0.20737 0.11183 0.61942 0.88564 1.17724 1.26402 1.45332 1.45674 1.53903 2.34738 2.42347 2.61564 2.76370 3.12520 3.13853 3.35656 3.53967 3.67228 4.01136 4.25548 4.25560 4.27247 4.28189 4.35431 4.50815 4.59674 4.62955 4.67008 4.82596 4.87573 5.09294 5.18904 5.40247 5.48105 5.74989 6.13102 6.17585 6.25299 6.34900 6.79544 7.35947 8.88322 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009852 B = 0.003475 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.416759 B = 8054.675125 C =10870.341793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.526 5.526 3 C 0.378 3.622 4 S 0.037 5.963 5 C -0.077 4.077 6 C 0.040 3.960 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.960 3.040 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.268 1.268 15 N -0.552 5.552 16 C 0.175 3.825 17 C -0.057 4.057 18 C 0.006 3.994 19 N 0.023 4.977 20 O -0.189 6.189 21 O -0.131 6.131 22 C -0.087 4.087 23 C -0.014 4.014 24 C -0.183 4.183 25 C 0.554 3.446 26 O -0.514 6.514 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.266 0.734 35 H 0.163 0.837 36 H 0.190 0.810 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -21.425 -0.003 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.249 5.249 3 C 0.007 3.993 4 S 0.276 5.724 5 C -0.226 4.226 6 C 0.001 3.999 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.785 3.215 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.193 1.193 15 N -0.280 5.280 16 C 0.058 3.942 17 C -0.078 4.078 18 C -0.078 4.078 19 N 0.543 4.457 20 O -0.397 6.397 21 O -0.356 6.356 22 C -0.107 4.107 23 C -0.033 4.033 24 C -0.192 4.192 25 C 0.346 3.654 26 O -0.389 6.389 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.181 0.819 36 H 0.207 0.793 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.591 -21.005 -0.011 21.065 hybrid contribution 1.939 0.326 0.001 1.966 sum 0.348 -20.679 -0.010 20.682 Atomic orbital electron populations 1.22609 0.73684 1.07211 1.06332 1.46422 1.11481 1.04679 1.62289 1.25399 0.91619 0.92058 0.90272 1.85922 1.10311 0.89667 1.86536 1.23756 0.97118 0.95363 1.06369 1.18777 0.96049 0.88353 0.96724 1.21452 0.93548 0.91431 1.51467 0.91754 1.25826 0.97985 1.00602 0.94499 1.70043 1.19657 1.15987 1.50982 0.85568 0.79153 0.77596 0.79186 1.19315 1.20912 1.19324 1.69001 1.01497 1.29172 1.28297 1.18356 0.92741 0.88088 0.95030 1.20372 0.91390 0.99439 0.96604 1.20946 0.78676 0.97209 1.10944 1.43816 1.04028 1.00395 0.97452 1.94617 1.74338 1.15828 1.54951 1.94503 1.63946 1.25801 1.51311 1.20954 0.95243 0.96201 0.98298 1.20983 0.91325 0.98824 0.92180 1.21053 0.93408 0.95754 1.08969 1.18236 0.87497 0.83181 0.76479 1.90873 1.70557 1.27871 1.49604 0.86818 0.87695 0.87695 0.89177 0.89175 0.97182 0.97181 0.92539 0.81908 0.79306 0.79799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.47 127.77 1.21 1.85 16 2 N -0.53 -11.56 3.02 -666.70 -2.02 -13.58 16 3 C 0.38 9.72 7.78 179.62 1.40 11.11 16 4 S 0.04 1.00 20.49 -56.49 -1.16 -0.16 16 5 C -0.08 -2.79 4.72 71.98 0.34 -2.45 16 6 C 0.04 1.87 4.98 29.85 0.15 2.02 16 7 C -0.54 -28.22 9.11 25.60 0.23 -27.99 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.01 0.54 5.46 84.66 0.46 1.00 16 10 N -0.93 -52.69 13.29 21.45 0.28 -52.40 16 11 Si 0.96 42.05 29.54 68.60 2.03 44.08 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 15 N -0.55 -15.62 8.95 -188.43 -1.69 -17.30 16 16 C 0.17 4.42 6.62 39.83 0.26 4.68 16 17 C -0.06 -1.36 9.48 22.27 0.21 -1.15 16 18 C 0.01 0.12 6.81 36.16 0.25 0.37 16 19 N 0.02 0.58 4.45 -46.98 -0.21 0.37 16 20 O -0.19 -5.43 18.38 18.89 0.35 -5.08 16 21 O -0.13 -3.10 18.40 18.88 0.35 -2.76 16 22 C -0.09 -1.33 9.47 22.08 0.21 -1.12 16 23 C -0.01 -0.21 9.63 22.21 0.21 0.00 16 24 C -0.18 -4.03 5.90 -19.95 -0.12 -4.15 16 25 C 0.55 12.92 7.66 86.43 0.66 13.59 16 26 O -0.51 -12.87 16.06 -4.44 -0.07 -12.95 16 27 H 0.11 1.60 6.95 -2.39 -0.02 1.58 16 28 H 0.10 1.33 7.96 -2.39 -0.02 1.31 16 29 H 0.10 1.33 7.96 -2.39 -0.02 1.31 16 30 H 0.09 3.26 8.10 -2.40 -0.02 3.24 16 31 H 0.09 3.26 8.09 -2.40 -0.02 3.24 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.16 4.10 7.55 -2.91 -0.02 4.08 16 36 H 0.19 1.83 7.56 -2.91 -0.02 1.81 16 37 H 0.18 2.03 7.82 -2.91 -0.02 2.00 16 Total: -1.00 -63.12 345.31 4.47 -58.64 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.13 Total: 3.38 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.48 Total: -2.24 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -3.63 Total: -82.91 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: 0.62 Total: -20.79 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -1.16 Total: -0.16 kcal Total: -63.12 4.47 -58.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185750438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.116 kcal (2) G-P(sol) polarization free energy of solvation -63.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds