Wall clock time and date at job start Tue Mar 31 2020 19:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33703 * 122.21283 * 2 1 4 4 C 1.46934 * 124.66796 * 359.95169 * 3 2 1 5 5 O 1.21663 * 119.99598 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00239 * 180.02562 * 4 3 2 7 7 C 1.47063 * 136.05840 * 359.62951 * 6 4 3 8 8 C 1.53239 * 88.08544 * 207.20625 * 7 6 4 9 9 O 1.42901 * 114.19858 * 87.72708 * 8 7 6 10 10 C 1.50697 * 114.32573 * 220.47599 * 8 7 6 11 11 H 1.07998 * 120.00516 * 93.75777 * 10 8 7 12 12 C 1.37881 * 119.99670 * 273.75260 * 10 8 7 13 13 N 1.31518 * 120.00007 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00060 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47107 * 90.00253 * 14 12 10 16 16 H 1.48499 * 109.47121 * 210.00176 * 14 12 10 17 17 H 1.48500 * 109.47283 * 330.00159 * 14 12 10 18 18 C 1.47067 * 136.05629 * 180.02562 * 6 4 3 19 19 S 1.75485 * 110.66977 * 179.97438 * 3 2 1 20 20 C 1.76021 * 91.62102 * 359.97438 * 19 3 2 21 21 C 1.39878 * 130.50917 * 179.97438 * 20 19 3 22 22 C 1.37395 * 120.38701 * 179.97438 * 21 20 19 23 23 C 1.38921 * 120.22262 * 0.03047 * 22 21 20 24 24 C 1.37173 * 120.51952 * 359.95434 * 23 22 21 25 25 F 1.35104 * 119.83606 * 180.02562 * 24 23 22 26 26 C 1.40018 * 109.53170 * 0.02562 * 20 19 3 27 27 H 1.08997 * 109.46634 * 89.97604 * 1 2 3 28 28 H 1.08996 * 109.47060 * 209.98007 * 1 2 3 29 29 H 1.08994 * 109.46832 * 329.98021 * 1 2 3 30 30 H 1.08997 * 113.46712 * 321.93532 * 7 6 4 31 31 H 1.08997 * 113.46673 * 92.37732 * 7 6 4 32 32 H 0.96699 * 113.99430 * 86.30381 * 9 8 7 33 33 H 0.97001 * 119.99898 * 180.02562 * 13 12 10 34 34 H 1.08992 * 113.46998 * 267.62853 * 18 6 4 35 35 H 1.09006 * 113.46495 * 38.00864 * 18 6 4 36 36 H 1.07997 * 119.81058 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.89287 * 179.74761 * 22 21 20 38 38 H 1.07998 * 119.73986 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2197 1.1312 0.0000 4 6 1.6428 2.4826 -0.0010 5 8 0.4349 2.6282 -0.0015 6 7 2.4516 3.5607 -0.0014 7 6 3.9034 3.7953 0.0054 8 6 3.6317 5.1349 0.6981 9 8 3.5658 5.0546 2.1234 10 6 4.4865 6.2736 0.2045 11 1 4.1222 6.9227 -0.5779 12 6 5.7339 6.4868 0.7520 13 7 6.1778 5.6961 1.7046 14 14 6.7933 7.8986 0.1407 15 1 6.5071 9.1154 0.9424 16 1 8.2271 7.5388 0.2819 17 1 6.4879 8.1641 -1.2881 18 6 2.2707 5.0202 -0.0020 19 16 3.9391 0.7801 0.0007 20 6 3.6358 -0.9538 0.0018 21 6 4.5268 -2.0321 0.0023 22 6 4.0559 -3.3228 0.0037 23 6 2.6886 -3.5683 0.0040 24 6 1.7941 -2.5283 0.0038 25 9 0.4673 -2.7829 0.0046 26 6 2.2553 -1.1875 0.0010 27 1 -0.3632 0.0004 -1.0277 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 4.4541 3.0902 0.6281 31 1 4.3307 3.9010 -0.9917 32 1 4.4248 5.1272 2.5615 33 1 7.0552 5.8464 2.0900 34 1 2.2583 5.4557 -1.0010 35 1 1.4355 5.3542 0.6137 36 1 5.5912 -1.8490 0.0025 37 1 4.7510 -4.1493 0.0000 38 1 2.3270 -4.5859 0.0046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186804756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:38 Heat of formation + Delta-G solvation = -42.217581 kcal Electronic energy + Delta-G solvation = -26035.784904 eV Core-core repulsion = 22078.667199 eV Total energy + Delta-G solvation = -3957.117705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.11470 -40.03740 -39.48500 -37.72927 -35.64723 -34.11690 -32.25938 -30.90000 -30.15099 -29.45501 -27.66017 -25.51008 -25.30406 -23.79577 -23.06525 -20.98204 -19.65515 -18.81912 -18.07183 -17.51092 -16.96241 -16.49710 -15.91218 -15.90602 -15.73584 -15.22195 -14.98163 -14.76465 -14.53227 -14.23251 -13.83972 -13.46143 -13.17842 -12.91125 -12.84960 -12.70376 -12.58656 -12.32876 -12.06974 -11.75740 -11.62911 -11.38894 -11.14255 -11.12141 -11.00836 -10.69834 -10.48853 -10.30360 -9.72970 -9.56034 -9.27998 -8.84492 -8.75351 -8.50239 -8.01501 -7.64533 -6.46836 -4.57692 0.21045 0.85820 1.41530 1.85011 1.89286 3.11219 3.19205 3.21190 3.25565 3.32186 3.54187 4.00412 4.13006 4.41164 4.54685 4.67978 4.75557 4.93043 5.00305 5.29790 5.40306 5.45181 5.50530 5.69347 5.76775 5.80301 5.85835 5.95535 6.03427 6.07846 6.24466 6.29837 6.36217 6.49484 6.52118 6.56800 6.62685 7.01300 7.56381 7.71890 8.29501 8.46165 8.55160 9.13930 9.41455 10.60001 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.003372 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.439565 B = 8301.377367 C = 9391.194747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.018 4.018 3 C -0.212 4.212 4 C 0.606 3.394 5 O -0.542 6.542 6 N -0.630 5.630 7 C 0.064 3.936 8 C 0.245 3.755 9 O -0.570 6.570 10 C -0.535 4.535 11 H 0.074 0.926 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.910 3.090 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.111 3.889 19 S 0.175 5.825 20 C -0.128 4.128 21 C -0.094 4.094 22 C -0.074 4.074 23 C -0.163 4.163 24 C 0.146 3.854 25 F -0.130 7.130 26 C -0.111 4.111 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.395 0.605 33 H 0.275 0.725 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -15.752 -3.682 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.032 4.032 3 C -0.331 4.331 4 C 0.395 3.605 5 O -0.424 6.424 6 N -0.362 5.362 7 C -0.060 4.060 8 C 0.203 3.797 9 O -0.383 6.383 10 C -0.573 4.573 11 H 0.092 0.908 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.737 3.263 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.011 4.011 19 S 0.446 5.554 20 C -0.244 4.244 21 C -0.116 4.116 22 C -0.096 4.096 23 C -0.184 4.184 24 C 0.124 3.876 25 F -0.109 7.109 26 C -0.121 4.121 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.252 0.748 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.899 -14.912 -3.672 15.384 hybrid contribution -0.076 -0.358 -0.216 0.425 sum -0.975 -15.270 -3.889 15.788 Atomic orbital electron populations 1.20995 0.88387 1.04672 1.03324 1.18846 0.98115 0.89200 0.97052 1.23570 0.97331 0.97484 1.14684 1.16377 0.85331 0.81472 0.77351 1.90699 1.13326 1.85300 1.53059 1.49591 1.10173 1.06604 1.69823 1.24403 0.78900 1.00909 1.01740 1.19451 0.89784 0.90086 0.80425 1.86058 1.38438 1.95701 1.18133 1.21410 1.00553 1.13874 1.21475 0.90759 1.25085 0.97434 0.96274 0.94183 1.69260 1.20374 1.37879 1.26192 0.86291 0.78988 0.81594 0.79447 1.20179 1.20850 1.19482 1.23379 1.00472 0.76823 1.00402 1.84865 1.02602 0.93293 1.74664 1.23293 0.95659 1.00478 1.04981 1.20529 0.99110 0.90559 1.01436 1.20873 0.94468 0.96465 0.97791 1.20862 0.93345 0.98477 1.05758 1.17577 0.77477 0.91598 1.00909 1.91477 1.31414 1.94584 1.93390 1.18014 0.92752 0.92451 1.08883 0.90706 0.91307 0.88010 0.91201 0.89459 0.74846 0.91454 0.89264 0.91100 0.84707 0.84227 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.93 36.01 0.32 -1.49 16 2 C -0.02 -0.31 5.86 -105.41 -0.62 -0.92 16 3 C -0.21 -3.89 6.31 -37.65 -0.24 -4.13 16 4 C 0.61 12.79 8.02 -12.74 -0.10 12.69 16 5 O -0.54 -12.27 14.67 5.22 0.08 -12.19 16 6 N -0.63 -13.41 3.69 -186.87 -0.69 -14.10 16 7 C 0.06 1.36 6.59 -8.65 -0.06 1.30 16 8 C 0.24 5.74 1.57 -91.40 -0.14 5.59 16 9 O -0.57 -14.49 13.54 -35.23 -0.48 -14.96 16 10 C -0.54 -12.97 8.69 -34.44 -0.30 -13.27 16 11 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 12 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 13 N -0.90 -22.04 11.01 55.43 0.61 -21.43 16 14 Si 0.91 18.85 29.54 -169.99 -5.02 13.83 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 C 0.11 2.37 8.03 -8.52 -0.07 2.31 16 19 S 0.17 2.78 19.96 -107.50 -2.15 0.63 16 20 C -0.13 -1.78 6.50 -38.30 -0.25 -2.03 16 21 C -0.09 -1.00 10.06 -39.27 -0.40 -1.40 16 22 C -0.07 -0.65 10.03 -39.64 -0.40 -1.05 16 23 C -0.16 -1.59 9.96 -39.72 -0.40 -1.99 16 24 C 0.15 1.86 7.34 -38.61 -0.28 1.58 16 25 F -0.13 -1.68 14.89 2.25 0.03 -1.64 16 26 C -0.11 -1.66 5.85 -107.08 -0.63 -2.29 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.96 6.25 -51.93 -0.32 0.63 16 29 H 0.10 1.80 5.73 -51.93 -0.30 1.50 16 30 H 0.07 1.48 6.34 -51.93 -0.33 1.16 16 31 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 32 H 0.39 10.11 6.32 45.56 0.29 10.40 16 33 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 34 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 35 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -27.70 335.16 -9.37 -37.07 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -3.16 Total: 11.19 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -3.65 Total: -3.44 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.08 Total: -35.53 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.40 Total: -27.16 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.03 Total: -1.64 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.15 Total: 0.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.70 -9.37 -37.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186804756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.149 kcal (2) G-P(sol) polarization free energy of solvation -27.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds