Wall clock time and date at job start Tue Mar 31 2020 19:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33703 * 122.21283 * 2 1 4 4 C 1.46934 * 124.66796 * 359.95169 * 3 2 1 5 5 O 1.21663 * 119.99598 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00239 * 180.02562 * 4 3 2 7 7 C 1.47063 * 136.05840 * 359.62951 * 6 4 3 8 8 C 1.53239 * 88.08544 * 207.20625 * 7 6 4 9 9 O 1.42901 * 114.19858 * 87.72708 * 8 7 6 10 10 C 1.50697 * 114.32573 * 220.47599 * 8 7 6 11 11 H 1.07998 * 120.00516 * 93.75777 * 10 8 7 12 12 C 1.37881 * 119.99670 * 273.75260 * 10 8 7 13 13 N 1.31518 * 120.00007 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00060 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47107 * 90.00253 * 14 12 10 16 16 H 1.48499 * 109.47121 * 210.00176 * 14 12 10 17 17 H 1.48500 * 109.47283 * 330.00159 * 14 12 10 18 18 C 1.47067 * 136.05629 * 180.02562 * 6 4 3 19 19 S 1.75485 * 110.66977 * 179.97438 * 3 2 1 20 20 C 1.76021 * 91.62102 * 359.97438 * 19 3 2 21 21 C 1.39878 * 130.50917 * 179.97438 * 20 19 3 22 22 C 1.37395 * 120.38701 * 179.97438 * 21 20 19 23 23 C 1.38921 * 120.22262 * 0.03047 * 22 21 20 24 24 C 1.37173 * 120.51952 * 359.95434 * 23 22 21 25 25 F 1.35104 * 119.83606 * 180.02562 * 24 23 22 26 26 C 1.40018 * 109.53170 * 0.02562 * 20 19 3 27 27 H 1.08997 * 109.46634 * 89.97604 * 1 2 3 28 28 H 1.08996 * 109.47060 * 209.98007 * 1 2 3 29 29 H 1.08994 * 109.46832 * 329.98021 * 1 2 3 30 30 H 1.08997 * 113.46712 * 321.93532 * 7 6 4 31 31 H 1.08997 * 113.46673 * 92.37732 * 7 6 4 32 32 H 0.96699 * 113.99430 * 86.30381 * 9 8 7 33 33 H 0.97001 * 119.99898 * 180.02562 * 13 12 10 34 34 H 1.08992 * 113.46998 * 267.62853 * 18 6 4 35 35 H 1.09006 * 113.46495 * 38.00864 * 18 6 4 36 36 H 1.07997 * 119.81058 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.89287 * 179.74761 * 22 21 20 38 38 H 1.07998 * 119.73986 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2197 1.1312 0.0000 4 6 1.6428 2.4826 -0.0010 5 8 0.4349 2.6282 -0.0015 6 7 2.4516 3.5607 -0.0014 7 6 3.9034 3.7953 0.0054 8 6 3.6317 5.1349 0.6981 9 8 3.5658 5.0546 2.1234 10 6 4.4865 6.2736 0.2045 11 1 4.1222 6.9227 -0.5779 12 6 5.7339 6.4868 0.7520 13 7 6.1778 5.6961 1.7046 14 14 6.7933 7.8986 0.1407 15 1 6.5071 9.1154 0.9424 16 1 8.2271 7.5388 0.2819 17 1 6.4879 8.1641 -1.2881 18 6 2.2707 5.0202 -0.0020 19 16 3.9391 0.7801 0.0007 20 6 3.6358 -0.9538 0.0018 21 6 4.5268 -2.0321 0.0023 22 6 4.0559 -3.3228 0.0037 23 6 2.6886 -3.5683 0.0040 24 6 1.7941 -2.5283 0.0038 25 9 0.4673 -2.7829 0.0046 26 6 2.2553 -1.1875 0.0010 27 1 -0.3632 0.0004 -1.0277 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 4.4541 3.0902 0.6281 31 1 4.3307 3.9010 -0.9917 32 1 4.4248 5.1272 2.5615 33 1 7.0552 5.8464 2.0900 34 1 2.2583 5.4557 -1.0010 35 1 1.4355 5.3542 0.6137 36 1 5.5912 -1.8490 0.0025 37 1 4.7510 -4.1493 0.0000 38 1 2.3270 -4.5859 0.0046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186804756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:37 Heat of formation + Delta-G solvation = -58.927226 kcal Electronic energy + Delta-G solvation = -26036.509489 eV Core-core repulsion = 22078.667199 eV Total energy + Delta-G solvation = -3957.842290 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.06943 -41.54840 -40.72127 -39.29095 -36.82804 -35.96859 -34.15077 -31.85471 -31.45584 -30.76527 -29.12671 -27.19194 -27.01464 -24.87720 -24.12142 -22.38487 -21.14376 -20.08204 -19.64202 -19.06233 -18.34268 -17.56243 -17.24394 -17.00250 -16.94935 -16.87120 -16.54018 -16.04865 -15.91867 -15.54979 -15.26333 -14.84717 -14.57260 -14.43351 -14.14804 -13.90317 -13.78949 -13.70201 -13.66243 -13.44331 -12.85713 -12.79843 -12.71992 -12.40342 -12.26212 -12.22183 -12.06739 -11.78936 -11.43954 -10.98979 -10.68101 -10.58122 -10.30629 -9.89447 -9.64707 -8.77096 -8.29218 -6.46869 -0.91216 -0.02885 0.26157 0.69731 0.72886 1.47765 1.50939 1.60150 1.73248 1.92284 2.40154 2.42760 2.91421 3.06683 3.21423 3.57420 3.63667 3.72542 3.81280 4.01793 4.15854 4.22615 4.33867 4.39122 4.48394 4.54633 4.59589 4.64954 4.73623 4.79545 4.82592 4.92832 5.02786 5.13452 5.17738 5.23028 5.27860 5.70960 5.73210 5.86347 6.58944 6.65056 6.90683 7.26857 7.44782 8.77501 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.003372 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.439565 B = 8301.377367 C = 9391.194747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.008 4.008 3 C -0.254 4.254 4 C 0.600 3.400 5 O -0.570 6.570 6 N -0.634 5.634 7 C 0.080 3.920 8 C 0.225 3.775 9 O -0.586 6.586 10 C -0.553 4.553 11 H 0.078 0.922 12 C 0.034 3.966 13 N -0.916 5.916 14 Si 0.972 3.028 15 H -0.279 1.279 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.111 3.889 19 S 0.153 5.847 20 C -0.125 4.125 21 C -0.101 4.101 22 C -0.046 4.046 23 C -0.147 4.147 24 C 0.130 3.870 25 F -0.135 7.135 26 C -0.143 4.143 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.390 0.610 33 H 0.278 0.722 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.160 0.840 37 H 0.189 0.811 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -18.787 -4.492 19.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.023 4.023 3 C -0.372 4.372 4 C 0.391 3.609 5 O -0.453 6.453 6 N -0.366 5.366 7 C -0.044 4.044 8 C 0.184 3.816 9 O -0.399 6.399 10 C -0.591 4.591 11 H 0.096 0.904 12 C -0.167 4.167 13 N -0.557 5.557 14 Si 0.797 3.203 15 H -0.204 1.204 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.011 4.011 19 S 0.424 5.576 20 C -0.242 4.242 21 C -0.123 4.123 22 C -0.067 4.067 23 C -0.168 4.168 24 C 0.109 3.891 25 F -0.113 7.113 26 C -0.151 4.151 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.246 0.754 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.177 0.823 37 H 0.207 0.793 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.746 -17.948 -4.489 18.515 hybrid contribution -0.610 0.320 0.061 0.692 sum 0.135 -17.627 -4.428 18.175 Atomic orbital electron populations 1.20944 0.88282 1.04194 1.03525 1.19145 0.98471 0.89841 0.94834 1.23291 0.98929 0.96272 1.18748 1.16831 0.85107 0.82463 0.76510 1.90666 1.14311 1.86015 1.54327 1.49608 1.10207 1.06574 1.70244 1.24166 0.78938 0.99483 1.01768 1.19713 0.91044 0.91322 0.79558 1.86042 1.38306 1.95911 1.19631 1.21633 1.01097 1.14454 1.21938 0.90406 1.25782 0.98368 0.98269 0.94263 1.69325 1.20708 1.38900 1.26747 0.85328 0.77383 0.78567 0.79013 1.20431 1.20504 1.18892 1.23405 0.99116 0.77502 1.01035 1.84650 1.01136 0.95908 1.75933 1.23408 0.95962 0.99565 1.05262 1.20990 0.99990 0.90398 1.00970 1.21492 0.94756 0.96794 0.93677 1.21388 0.93347 0.99230 1.02818 1.17842 0.77907 0.91412 1.01943 1.91463 1.31871 1.94474 1.93525 1.18103 0.93073 0.92804 1.11122 0.90090 0.89643 0.90392 0.91545 0.88505 0.75357 0.91204 0.87268 0.92200 0.82281 0.79337 0.80674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.59 8.93 71.24 0.64 -2.95 16 2 C -0.01 -0.28 5.86 -20.38 -0.12 -0.40 16 3 C -0.25 -9.74 6.31 23.52 0.15 -9.59 16 4 C 0.60 26.65 8.02 86.52 0.69 27.35 16 5 O -0.57 -27.24 14.67 -4.23 -0.06 -27.30 16 6 N -0.63 -28.16 3.69 -863.83 -3.19 -31.35 16 7 C 0.08 3.48 6.59 83.09 0.55 4.03 16 8 C 0.23 10.87 1.57 -11.30 -0.02 10.85 16 9 O -0.59 -30.96 13.54 -148.98 -2.02 -32.98 16 10 C -0.55 -27.14 8.69 25.60 0.22 -26.92 16 11 H 0.08 3.66 7.81 -2.91 -0.02 3.64 16 12 C 0.03 1.64 5.39 84.66 0.46 2.09 16 13 N -0.92 -45.49 11.01 21.45 0.24 -45.25 16 14 Si 0.97 38.44 29.54 68.60 2.03 40.47 16 15 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 16 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 18 C 0.11 4.94 8.03 83.17 0.67 5.60 16 19 S 0.15 4.97 19.96 -56.49 -1.13 3.84 16 20 C -0.13 -3.32 6.50 23.10 0.15 -3.17 16 21 C -0.10 -1.76 10.06 22.47 0.23 -1.53 16 22 C -0.05 -0.53 10.03 22.23 0.22 -0.31 16 23 C -0.15 -2.13 9.96 22.18 0.22 -1.91 16 24 C 0.13 2.99 7.34 22.90 0.17 3.16 16 25 F -0.13 -3.21 14.89 44.97 0.67 -2.54 16 26 C -0.14 -4.11 5.85 -21.45 -0.13 -4.23 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.08 2.40 6.25 -2.39 -0.01 2.38 16 29 H 0.08 2.91 5.73 -2.39 -0.01 2.90 16 30 H 0.07 2.93 6.34 -2.39 -0.02 2.91 16 31 H 0.10 3.97 8.10 -2.39 -0.02 3.95 16 32 H 0.39 20.78 6.32 -74.06 -0.47 20.31 16 33 H 0.28 13.01 8.31 -92.71 -0.77 12.24 16 34 H 0.11 4.31 8.10 -2.39 -0.02 4.29 16 35 H 0.06 2.73 8.14 -2.38 -0.02 2.71 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.19 0.49 8.06 -2.91 -0.02 0.46 16 38 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -62.70 335.16 1.30 -61.40 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.67 Total: 31.66 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.10 Total: 2.06 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -2.95 Total: -76.60 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -2.08 Total: -60.28 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.67 Total: -2.54 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -1.13 Total: 3.84 kcal Total: -62.70 1.30 -61.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186804756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.472 kcal (2) G-P(sol) polarization free energy of solvation -62.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds