Wall clock time and date at job start Tue Mar 31 2020 18:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.46242 * 126.96019 * 2 1 4 4 C 1.39719 * 134.17265 * 0.82103 * 3 2 1 5 5 C 1.36713 * 119.69911 * 179.52187 * 4 3 2 6 6 Cl 1.73603 * 119.79072 * 179.67451 * 5 4 3 7 7 C 1.38941 * 120.41966 * 359.69065 * 5 4 3 8 8 C 1.37788 * 120.73209 * 0.02562 * 7 5 4 9 9 C 1.39032 * 119.86639 * 359.97438 * 8 7 5 10 10 O 1.34742 * 133.21889 * 180.02562 * 9 8 7 11 11 C 1.34946 * 110.85756 * 179.97438 * 10 9 8 12 12 C 1.46976 * 125.12763 * 180.02562 * 11 10 9 13 13 O 1.21661 * 119.99654 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00090 * 359.97438 * 12 11 10 15 15 C 1.47063 * 136.05910 * 359.63739 * 14 12 11 16 16 C 1.53754 * 87.88863 * 152.95930 * 15 14 12 17 17 O 1.42898 * 114.39524 * 272.67494 * 16 15 14 18 18 C 1.50706 * 114.26575 * 139.78806 * 16 15 14 19 19 H 1.07995 * 120.00113 * 266.47341 * 18 16 15 20 20 C 1.37875 * 119.99485 * 86.47432 * 18 16 15 21 21 N 1.31513 * 120.00397 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 119.99894 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47092 * 60.00332 * 22 20 18 24 24 H 1.48501 * 109.47335 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47483 * 300.00580 * 22 20 18 26 26 C 1.47068 * 136.05252 * 180.02562 * 14 12 11 27 27 H 1.09002 * 109.47152 * 269.71044 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71145 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71125 * 1 2 3 30 30 H 1.07999 * 120.14934 * 359.19456 * 4 3 2 31 31 H 1.08005 * 119.63591 * 180.02562 * 7 5 4 32 32 H 1.07992 * 120.06930 * 179.97438 * 8 7 5 33 33 H 1.09003 * 113.46835 * 267.69350 * 15 14 12 34 34 H 1.09002 * 113.46860 * 38.12734 * 15 14 12 35 35 H 0.96695 * 113.99979 * 273.58609 * 17 16 15 36 36 H 0.97005 * 120.00223 * 180.02562 * 21 20 18 37 37 H 1.08994 * 113.46990 * 321.86686 * 26 14 12 38 38 H 1.09001 * 113.46654 * 92.25061 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1710 2.5490 0.0144 5 6 3.2400 3.4012 0.0194 6 17 2.9753 5.1169 0.0287 7 6 4.5370 2.9029 0.0168 8 6 4.7695 1.5448 0.0085 9 6 3.6980 0.6590 0.0033 10 8 3.6125 -0.6857 -0.0043 11 6 2.3235 -1.0852 -0.0062 12 6 1.8716 -2.4838 -0.0135 13 8 0.6820 -2.7386 -0.0142 14 7 2.7750 -3.4839 -0.0195 15 6 4.2421 -3.5856 -0.0273 16 6 4.0946 -4.9478 0.6704 17 8 4.0246 -4.8762 2.0959 18 6 5.0468 -6.0047 0.1730 19 1 4.7403 -6.6823 -0.6100 20 6 6.3093 -6.1066 0.7178 21 7 6.6823 -5.2817 1.6718 22 14 7.4893 -7.4171 0.1019 23 1 7.7395 -7.2160 -1.3480 24 1 8.7715 -7.3171 0.8444 25 1 6.8950 -8.7604 0.3200 26 6 2.7274 -4.9538 -0.0279 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5094 30 1 1.1647 2.9410 0.0161 31 1 5.3722 3.5877 0.0212 32 1 5.7820 1.1692 0.0062 33 1 4.6671 -3.6546 -1.0287 34 1 4.7328 -2.8317 0.5883 35 1 4.8874 -4.8727 2.5323 36 1 7.5707 -5.3532 2.0548 37 1 1.9275 -5.3657 0.5873 38 1 2.7523 -5.3832 -1.0294 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186827410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:52 Heat of formation + Delta-G solvation = -21.868108 kcal Electronic energy + Delta-G solvation = -25994.260970 eV Core-core repulsion = 22023.609188 eV Total energy + Delta-G solvation = -3970.651782 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.076 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.59313 -39.64667 -38.35999 -37.58043 -36.47326 -34.23709 -33.83037 -32.24466 -30.71910 -30.28274 -29.01473 -27.35116 -25.59663 -25.20597 -23.74586 -22.83385 -20.87997 -20.09112 -19.02251 -17.82640 -17.34479 -16.99285 -16.51340 -16.42024 -15.73713 -15.24738 -14.88997 -14.63345 -14.32854 -14.23796 -13.97664 -13.47541 -13.30924 -13.07290 -12.96349 -12.75090 -12.60671 -12.52893 -12.12541 -12.07107 -11.60740 -11.54903 -11.41125 -11.09980 -11.07254 -11.03937 -10.54616 -10.32979 -10.09553 -9.94932 -9.37345 -8.84222 -8.71792 -8.54077 -8.33854 -7.95510 -6.45200 -4.56036 0.43207 0.93608 1.76769 1.82761 2.49098 3.13193 3.19405 3.20625 3.30138 3.31877 3.43995 4.13509 4.25780 4.34915 4.66064 4.75304 4.83116 4.93866 4.97021 5.16042 5.44318 5.46908 5.59839 5.70687 5.73120 5.86475 5.86773 5.94687 6.02151 6.06466 6.15996 6.31198 6.34636 6.43551 6.47545 6.65895 6.94166 7.03964 7.57677 7.73218 8.18407 8.44306 8.48196 9.15268 9.42749 10.61668 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.002970 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.762805 B = 9426.435232 C =10740.203048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.052 4.052 5 C -0.055 4.055 6 Cl -0.069 7.069 7 C -0.083 4.083 8 C -0.091 4.091 9 C 0.072 3.928 10 O -0.167 6.167 11 C 0.001 3.999 12 C 0.612 3.388 13 O -0.535 6.535 14 N -0.620 5.620 15 C 0.073 3.927 16 C 0.242 3.758 17 O -0.570 6.570 18 C -0.535 4.535 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.897 5.897 22 Si 0.910 3.090 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.109 3.891 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.395 0.605 36 H 0.275 0.725 37 H 0.072 0.928 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 15.568 -3.685 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.128 4.128 4 C -0.071 4.071 5 C -0.082 4.082 6 Cl -0.040 7.040 7 C -0.101 4.101 8 C -0.110 4.110 9 C 0.023 3.977 10 O -0.068 6.068 11 C -0.049 4.049 12 C 0.400 3.600 13 O -0.416 6.416 14 N -0.351 5.351 15 C -0.050 4.050 16 C 0.200 3.800 17 O -0.384 6.384 18 C -0.573 4.573 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.737 3.263 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.012 4.012 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.157 0.843 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.252 0.748 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.696 15.587 -3.662 16.686 hybrid contribution 1.366 -0.193 -0.208 1.395 sum -3.330 15.395 -3.870 16.219 Atomic orbital electron populations 1.20403 0.87330 1.03678 1.03121 1.21258 0.97055 0.88890 1.02980 1.19630 0.92736 0.93451 1.07015 1.20093 0.98976 0.89991 0.97992 1.20302 0.94516 0.84934 1.08455 1.98367 1.96877 1.11570 1.97184 1.20805 0.95627 0.94211 0.99496 1.19957 0.97539 0.90180 1.03279 1.19835 0.95294 0.81877 1.00710 1.84228 1.27332 1.20013 1.75196 1.22045 0.80627 0.94991 1.07260 1.16075 0.84778 0.80769 0.78378 1.90791 1.14908 1.82073 1.53827 1.49694 1.09775 1.07602 1.67981 1.24420 0.77002 1.01981 1.01594 1.19570 0.89899 0.90148 0.80416 1.86040 1.37813 1.96353 1.18161 1.21359 0.97710 1.16804 1.21434 0.90836 1.25086 0.98028 0.95709 0.94196 1.69253 1.21228 1.37055 1.26155 0.86344 0.79424 0.81480 0.79023 1.19834 1.20957 1.19779 1.23449 1.00129 0.77064 1.00577 0.90570 0.88898 0.91563 0.84330 0.83622 0.83565 0.89739 0.91110 0.74825 0.91432 0.90993 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.81 36.01 0.35 -0.82 16 2 C -0.10 -1.55 6.39 -102.28 -0.65 -2.20 16 3 C -0.13 -1.81 6.37 -105.19 -0.67 -2.48 16 4 C -0.05 -0.60 9.82 -39.58 -0.39 -0.99 16 5 C -0.06 -0.59 6.28 -39.87 -0.25 -0.84 16 6 Cl -0.07 -0.64 28.93 -51.86 -1.50 -2.14 16 7 C -0.08 -0.83 9.79 -39.49 -0.39 -1.21 16 8 C -0.09 -1.07 10.07 -39.45 -0.40 -1.46 16 9 C 0.07 1.08 7.41 -38.35 -0.28 0.80 16 10 O -0.17 -2.97 9.09 2.70 0.02 -2.95 16 11 C 0.00 0.01 7.03 -36.91 -0.26 -0.24 16 12 C 0.61 12.61 8.05 -12.72 -0.10 12.50 16 13 O -0.53 -11.55 15.39 5.22 0.08 -11.47 16 14 N -0.62 -13.14 3.69 -186.47 -0.69 -13.83 16 15 C 0.07 1.57 7.22 -8.37 -0.06 1.51 16 16 C 0.24 5.69 1.58 -91.11 -0.14 5.54 16 17 O -0.57 -14.54 13.55 -35.23 -0.48 -15.02 16 18 C -0.53 -13.02 8.70 -34.44 -0.30 -13.32 16 19 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 20 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 21 N -0.90 -22.30 11.01 55.43 0.61 -21.69 16 22 Si 0.91 18.97 29.54 -169.99 -5.02 13.94 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 C 0.11 2.31 8.02 -8.49 -0.07 2.24 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.36 6.37 -51.93 -0.33 1.03 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 34 H 0.07 1.58 7.46 -51.93 -0.39 1.19 16 35 H 0.39 10.19 6.32 45.56 0.29 10.48 16 36 H 0.28 6.52 8.31 -40.82 -0.34 6.18 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -27.20 345.52 -8.82 -36.03 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.35 Total: 11.22 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -3.71 Total: 0.70 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.08 Total: -35.52 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.37 Total: -29.44 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.20 -8.82 -36.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186827410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.159 kcal (2) G-P(sol) polarization free energy of solvation -27.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds