Wall clock time and date at job start Tue Mar 31 2020 18:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.46242 * 126.96019 * 2 1 4 4 C 1.39719 * 134.17265 * 0.82103 * 3 2 1 5 5 C 1.36713 * 119.69911 * 179.52187 * 4 3 2 6 6 Cl 1.73603 * 119.79072 * 179.67451 * 5 4 3 7 7 C 1.38941 * 120.41966 * 359.69065 * 5 4 3 8 8 C 1.37788 * 120.73209 * 0.02562 * 7 5 4 9 9 C 1.39032 * 119.86639 * 359.97438 * 8 7 5 10 10 O 1.34742 * 133.21889 * 180.02562 * 9 8 7 11 11 C 1.34946 * 110.85756 * 179.97438 * 10 9 8 12 12 C 1.46976 * 125.12763 * 180.02562 * 11 10 9 13 13 O 1.21661 * 119.99654 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00090 * 359.97438 * 12 11 10 15 15 C 1.47063 * 136.05910 * 359.63739 * 14 12 11 16 16 C 1.53754 * 87.88863 * 152.95930 * 15 14 12 17 17 O 1.42898 * 114.39524 * 272.67494 * 16 15 14 18 18 C 1.50706 * 114.26575 * 139.78806 * 16 15 14 19 19 H 1.07995 * 120.00113 * 266.47341 * 18 16 15 20 20 C 1.37875 * 119.99485 * 86.47432 * 18 16 15 21 21 N 1.31513 * 120.00397 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 119.99894 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47092 * 60.00332 * 22 20 18 24 24 H 1.48501 * 109.47335 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47483 * 300.00580 * 22 20 18 26 26 C 1.47068 * 136.05252 * 180.02562 * 14 12 11 27 27 H 1.09002 * 109.47152 * 269.71044 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.71145 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.71125 * 1 2 3 30 30 H 1.07999 * 120.14934 * 359.19456 * 4 3 2 31 31 H 1.08005 * 119.63591 * 180.02562 * 7 5 4 32 32 H 1.07992 * 120.06930 * 179.97438 * 8 7 5 33 33 H 1.09003 * 113.46835 * 267.69350 * 15 14 12 34 34 H 1.09002 * 113.46860 * 38.12734 * 15 14 12 35 35 H 0.96695 * 113.99979 * 273.58609 * 17 16 15 36 36 H 0.97005 * 120.00223 * 180.02562 * 21 20 18 37 37 H 1.08994 * 113.46990 * 321.86686 * 26 14 12 38 38 H 1.09001 * 113.46654 * 92.25061 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3863 1.1686 0.0000 4 6 2.1710 2.5490 0.0144 5 6 3.2400 3.4012 0.0194 6 17 2.9753 5.1169 0.0287 7 6 4.5370 2.9029 0.0168 8 6 4.7695 1.5448 0.0085 9 6 3.6980 0.6590 0.0033 10 8 3.6125 -0.6857 -0.0043 11 6 2.3235 -1.0852 -0.0062 12 6 1.8716 -2.4838 -0.0135 13 8 0.6820 -2.7386 -0.0142 14 7 2.7750 -3.4839 -0.0195 15 6 4.2421 -3.5856 -0.0273 16 6 4.0946 -4.9478 0.6704 17 8 4.0246 -4.8762 2.0959 18 6 5.0468 -6.0047 0.1730 19 1 4.7403 -6.6823 -0.6100 20 6 6.3093 -6.1066 0.7178 21 7 6.6823 -5.2817 1.6718 22 14 7.4893 -7.4171 0.1019 23 1 7.7395 -7.2160 -1.3480 24 1 8.7715 -7.3171 0.8444 25 1 6.8950 -8.7604 0.3200 26 6 2.7274 -4.9538 -0.0279 27 1 -0.3633 -0.0052 1.0277 28 1 -0.3633 -0.8874 -0.5183 29 1 -0.3633 0.8926 -0.5094 30 1 1.1647 2.9410 0.0161 31 1 5.3722 3.5877 0.0212 32 1 5.7820 1.1692 0.0062 33 1 4.6671 -3.6546 -1.0287 34 1 4.7328 -2.8317 0.5883 35 1 4.8874 -4.8727 2.5323 36 1 7.5707 -5.3532 2.0548 37 1 1.9275 -5.3657 0.5873 38 1 2.7523 -5.3832 -1.0294 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186827410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:51 Heat of formation + Delta-G solvation = -37.981766 kcal Electronic energy + Delta-G solvation = -25994.959711 eV Core-core repulsion = 22023.609188 eV Total energy + Delta-G solvation = -3971.350523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.076 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.74285 -41.29622 -39.43432 -39.12580 -37.31046 -36.01605 -35.05052 -34.14689 -31.67829 -31.55026 -30.42201 -28.66521 -27.22964 -26.93115 -24.94193 -23.87953 -22.29609 -21.36452 -20.54322 -19.54776 -18.73754 -18.22245 -17.70095 -17.58794 -17.36693 -16.99798 -16.26629 -16.02125 -15.96769 -15.27070 -15.20278 -14.81967 -14.55674 -14.34826 -14.24058 -14.10169 -13.96285 -13.76862 -13.62566 -13.42913 -13.19813 -12.81454 -12.76067 -12.44476 -12.29417 -12.23802 -12.21742 -11.92581 -11.56594 -11.14217 -11.09475 -10.69100 -10.32672 -9.85792 -9.64941 -9.33788 -8.28880 -6.46545 -0.66280 -0.02991 0.60376 0.98060 1.28857 1.49008 1.50902 1.58481 1.82322 1.93137 2.36530 2.40022 2.91151 3.06351 3.34977 3.52612 3.67233 3.73850 3.91089 4.04189 4.09304 4.16254 4.34338 4.50449 4.57094 4.61348 4.67806 4.70503 4.77506 4.82363 4.88776 4.95094 4.98766 5.02597 5.17447 5.26416 5.29659 5.70935 5.81145 5.86985 6.54919 6.60530 6.85072 7.27033 7.44440 8.77551 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.002970 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.762805 B = 9426.435232 C =10740.203048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.076 4.076 3 C -0.144 4.144 4 C -0.046 4.046 5 C -0.057 4.057 6 Cl -0.050 7.050 7 C -0.062 4.062 8 C -0.101 4.101 9 C 0.051 3.949 10 O -0.191 6.191 11 C -0.048 4.048 12 C 0.609 3.391 13 O -0.554 6.554 14 N -0.627 5.627 15 C 0.089 3.911 16 C 0.222 3.778 17 O -0.585 6.585 18 C -0.552 4.552 19 H 0.080 0.920 20 C 0.031 3.969 21 N -0.918 5.918 22 Si 0.973 3.027 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.113 3.887 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.180 0.820 32 H 0.162 0.838 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.390 0.610 36 H 0.277 0.723 37 H 0.065 0.935 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 17.844 -4.498 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.065 4.065 5 C -0.083 4.083 6 Cl -0.021 7.021 7 C -0.080 4.080 8 C -0.119 4.119 9 C 0.003 3.997 10 O -0.093 6.093 11 C -0.097 4.097 12 C 0.399 3.601 13 O -0.437 6.437 14 N -0.358 5.358 15 C -0.034 4.034 16 C 0.180 3.820 17 O -0.398 6.398 18 C -0.590 4.590 19 H 0.098 0.902 20 C -0.170 4.170 21 N -0.559 5.559 22 Si 0.798 3.202 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.197 1.197 26 C -0.009 4.009 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.179 0.821 31 H 0.197 0.803 32 H 0.180 0.820 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.310 17.879 -4.484 18.930 hybrid contribution 1.221 -0.649 0.069 1.385 sum -3.089 17.230 -4.414 18.053 Atomic orbital electron populations 1.20502 0.85747 1.04469 1.03825 1.21682 0.98091 0.88821 0.99357 1.19710 0.91959 0.94199 1.08661 1.20327 1.00536 0.88780 0.96835 1.20460 0.94554 0.85883 1.07432 1.98384 1.96837 1.09860 1.97027 1.21221 0.96556 0.93799 0.96443 1.20286 0.97609 0.90477 1.03542 1.20416 0.96899 0.81105 1.01329 1.84142 1.27091 1.21706 1.76319 1.21647 0.81695 0.94279 1.12062 1.16400 0.84496 0.81682 0.77498 1.90755 1.15382 1.82860 1.54674 1.49691 1.09554 1.07730 1.68859 1.24148 0.77430 1.00392 1.01403 1.19852 0.91423 0.91181 0.79545 1.86023 1.37595 1.96550 1.19661 1.21617 0.98219 1.17296 1.21846 0.90229 1.25820 0.99403 0.97433 0.94311 1.69330 1.21559 1.38142 1.26851 0.85363 0.77282 0.78869 0.78670 1.19125 1.20890 1.19749 1.23447 0.98567 0.77598 1.01282 0.89673 0.90644 0.88182 0.82103 0.80311 0.82048 0.88898 0.92563 0.75432 0.91309 0.91674 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.26 9.81 71.24 0.70 -1.56 16 2 C -0.08 -2.38 6.39 -18.35 -0.12 -2.50 16 3 C -0.14 -3.93 6.37 -20.23 -0.13 -4.06 16 4 C -0.05 -0.94 9.82 22.27 0.22 -0.72 16 5 C -0.06 -1.01 6.28 22.08 0.14 -0.88 16 6 Cl -0.05 -0.75 28.93 -2.72 -0.08 -0.83 16 7 C -0.06 -1.04 9.79 22.33 0.22 -0.82 16 8 C -0.10 -2.19 10.07 22.35 0.23 -1.97 16 9 C 0.05 1.51 7.41 23.07 0.17 1.69 16 10 O -0.19 -7.03 9.09 -13.25 -0.12 -7.15 16 11 C -0.05 -1.80 7.03 24.00 0.17 -1.63 16 12 C 0.61 26.08 8.05 86.53 0.70 26.77 16 13 O -0.55 -24.74 15.39 -4.23 -0.07 -24.80 16 14 N -0.63 -27.55 3.69 -862.58 -3.18 -30.73 16 15 C 0.09 3.98 7.22 83.27 0.60 4.58 16 16 C 0.22 10.70 1.58 -11.11 -0.02 10.69 16 17 O -0.59 -31.00 13.55 -148.98 -2.02 -33.01 16 18 C -0.55 -27.11 8.70 25.60 0.22 -26.89 16 19 H 0.08 3.71 7.81 -2.91 -0.02 3.69 16 20 C 0.03 1.50 5.39 84.65 0.46 1.96 16 21 N -0.92 -46.35 11.01 21.45 0.24 -46.11 16 22 Si 0.97 38.71 29.54 68.60 2.03 40.73 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 24 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 C 0.11 4.87 8.02 83.19 0.67 5.54 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 2.22 6.37 -2.39 -0.02 2.20 16 29 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 31 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 32 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 33 H 0.09 3.91 8.10 -2.39 -0.02 3.89 16 34 H 0.06 2.64 7.46 -2.39 -0.02 2.62 16 35 H 0.39 20.95 6.32 -74.06 -0.47 20.48 16 36 H 0.28 13.25 8.31 -92.70 -0.77 12.48 16 37 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.11 4.29 8.10 -2.39 -0.02 4.27 16 Total: -1.00 -59.97 345.52 1.68 -58.29 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.66 Total: 33.41 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 4.22 Total: 10.20 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -2.94 Total: -76.84 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -2.20 Total: -64.96 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -59.97 1.68 -58.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186827410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.311 kcal (2) G-P(sol) polarization free energy of solvation -59.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds