Wall clock time and date at job start Tue Mar 31 2020 19:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00431 * 2 1 4 4 H 1.48504 * 109.46861 * 269.99843 * 3 2 1 5 5 H 1.48500 * 109.47003 * 29.99707 * 3 2 1 6 6 H 1.48499 * 109.47122 * 149.99926 * 3 2 1 7 7 C 1.37877 * 119.99491 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00309 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00325 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47607 * 180.02562 * 9 7 2 11 11 C 1.46505 * 120.00080 * 84.99862 * 10 9 7 12 12 C 1.50703 * 109.47064 * 275.00439 * 11 10 9 13 13 C 1.34515 * 125.79060 * 89.99944 * 12 11 10 14 14 C 1.41380 * 106.83832 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84493 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.78568 * 269.69282 * 12 11 10 17 17 S 1.65596 * 120.00265 * 265.00283 * 10 9 7 18 18 O 1.42101 * 104.27728 * 26.06466 * 17 10 9 19 19 O 1.42101 * 104.28108 * 153.92463 * 17 10 9 20 20 C 1.81403 * 104.45087 * 269.99629 * 17 10 9 21 21 C 1.52992 * 109.47390 * 179.97438 * 20 17 10 22 22 C 1.53004 * 109.47498 * 179.97438 * 21 20 17 23 23 C 1.52992 * 109.47498 * 179.97438 * 22 21 20 24 24 Cl 1.80299 * 109.47259 * 180.02562 * 23 22 21 25 25 H 0.97007 * 119.99732 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47463 * 59.99799 * 9 7 2 27 27 H 1.09004 * 109.47217 * 300.00558 * 9 7 2 28 28 H 1.09002 * 109.47068 * 35.00407 * 11 10 9 29 29 H 1.09001 * 109.47372 * 155.00495 * 11 10 9 30 30 H 1.07996 * 126.58016 * 0.03378 * 13 12 11 31 31 H 1.08006 * 126.57610 * 179.97438 * 14 13 12 32 32 H 1.08005 * 125.79499 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47162 * 299.99966 * 20 17 10 34 34 H 1.09000 * 109.47109 * 59.99791 * 20 17 10 35 35 H 1.09000 * 109.47252 * 300.00292 * 21 20 17 36 36 H 1.09007 * 109.47178 * 59.99755 * 21 20 17 37 37 H 1.09000 * 109.47245 * 300.00465 * 22 21 20 38 38 H 1.09005 * 109.46462 * 60.00362 * 22 21 20 39 39 H 1.09000 * 109.47252 * 300.00461 * 23 22 21 40 40 H 1.09000 * 109.46854 * 60.00185 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0017 10 7 2.2027 -3.6127 0.0027 11 6 2.7628 -4.0966 1.2671 12 6 3.9610 -3.2613 1.6380 13 6 3.9388 -2.1400 2.3808 14 6 5.2746 -1.6875 2.4793 15 6 6.0333 -2.5596 1.7915 16 8 5.2329 -3.5134 1.2879 17 16 2.6458 -4.3246 -1.4253 18 8 2.4607 -3.3049 -2.3975 19 8 3.9349 -4.8623 -1.1638 20 6 1.4367 -5.6562 -1.6616 21 6 1.7427 -6.3977 -2.9644 22 6 0.7233 -7.5212 -3.1633 23 6 1.0289 -8.2622 -4.4665 24 17 -0.1729 -9.5857 -4.7013 25 1 -0.4850 0.8401 -0.0004 26 1 0.6239 -2.5575 -0.8879 27 1 0.6245 -2.5563 0.8919 28 1 2.0095 -4.0197 2.0511 29 1 3.0661 -5.1376 1.1554 30 1 3.0679 -1.6752 2.8186 31 1 5.6197 -0.8100 3.0060 32 1 7.1049 -2.5045 1.6682 33 1 1.4946 -6.3522 -0.8247 34 1 0.4341 -5.2317 -1.7124 35 1 1.6845 -5.7014 -3.8010 36 1 2.7455 -6.8221 -2.9140 37 1 0.7819 -8.2173 -2.3267 38 1 -0.2796 -7.0970 -3.2136 39 1 0.9700 -7.5658 -5.3029 40 1 2.0318 -8.6863 -4.4167 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228327734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:55 Heat of formation + Delta-G solvation = -73.412065 kcal Electronic energy + Delta-G solvation = -25192.337392 eV Core-core repulsion = 21354.894448 eV Total energy + Delta-G solvation = -3837.442944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.079 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87276 -36.73821 -36.56105 -35.99580 -35.43652 -35.22973 -32.56665 -32.27358 -30.32701 -29.86413 -27.24032 -24.87900 -24.27340 -22.43792 -21.58337 -21.07667 -19.99926 -18.28386 -17.17252 -16.81938 -16.58481 -16.28214 -15.83852 -15.47071 -15.14291 -14.76311 -14.55998 -14.22920 -14.00389 -13.62342 -13.42431 -12.96266 -12.40540 -12.37492 -12.22922 -12.16111 -12.09921 -11.93647 -11.87292 -11.54646 -11.47693 -11.15428 -11.10391 -11.09029 -10.86613 -10.73615 -10.61741 -10.56982 -10.23565 -10.04059 -9.75839 -9.18749 -8.43881 -8.29286 -7.79676 -6.04681 -4.05269 0.69332 1.98622 2.31795 3.13646 3.33900 3.40127 3.43779 3.47607 3.61591 4.17975 4.38741 4.45523 4.49442 4.57924 4.73106 4.92370 4.94465 5.12789 5.16063 5.26829 5.32989 5.34372 5.39981 5.64384 5.65706 5.71820 5.76217 5.85250 5.89799 6.18142 6.41671 6.62045 6.69342 7.07101 7.15953 7.30002 7.47352 7.80750 7.94940 8.21425 8.98282 9.59181 11.04464 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.003436 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.844355 B = 8147.239142 C = 9513.595801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.253 3.747 10 N -0.983 5.983 11 C 0.216 3.784 12 C -0.025 4.025 13 C -0.169 4.169 14 C -0.219 4.219 15 C -0.056 4.056 16 O -0.165 6.165 17 S 2.598 3.402 18 O -0.933 6.933 19 O -0.961 6.961 20 C -0.643 4.643 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.035 4.035 24 Cl -0.191 7.191 25 H 0.262 0.738 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.193 0.807 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 -14.667 -0.915 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.132 3.868 10 N -0.820 5.820 11 C 0.090 3.910 12 C -0.077 4.077 13 C -0.189 4.189 14 C -0.238 4.238 15 C -0.125 4.125 16 O -0.061 6.061 17 S 2.690 3.310 18 O -0.923 6.923 19 O -0.951 6.951 20 C -0.769 4.769 21 C -0.150 4.150 22 C -0.161 4.161 23 C -0.098 4.098 24 Cl -0.164 7.164 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.210 0.790 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.571 -14.651 -1.654 15.170 hybrid contribution -0.192 1.054 0.303 1.114 sum 3.379 -13.597 -1.351 14.075 Atomic orbital electron populations 1.69910 1.05900 1.26920 1.51244 1.24864 0.94772 0.99049 0.95228 0.86604 0.80026 0.83286 0.78298 1.20625 1.21337 1.19611 1.21460 0.93806 0.90157 1.49791 0.91806 1.19172 0.86737 0.82478 0.98406 1.57697 1.59123 1.45872 1.19350 1.19378 0.89150 0.94499 0.87993 1.22814 0.83726 1.00187 1.00958 1.21548 0.97555 0.96377 1.03421 1.21782 0.93978 1.02177 1.05858 1.23855 0.96483 0.90968 1.01163 1.84083 1.16974 1.44689 1.60328 1.05448 0.75609 0.75515 0.74453 1.93641 1.86285 1.52595 1.59815 1.93575 1.35473 1.81609 1.84455 1.30833 1.20785 1.19671 1.05615 1.21244 1.00275 0.97896 0.95572 1.21877 1.00524 0.97222 0.96497 1.24461 0.93841 0.90744 1.00712 1.98721 1.63985 1.55950 1.97791 0.92856 0.94227 0.94469 0.87649 0.90063 0.83344 0.84304 0.79039 0.85420 0.84808 0.89988 0.90208 0.90225 0.90042 0.88546 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.78 8.29 -34.44 -0.29 -14.07 16 8 H 0.06 1.80 6.83 -52.48 -0.36 1.44 16 9 C 0.25 5.87 5.03 -5.20 -0.03 5.84 16 10 N -0.98 -18.71 2.72 -116.95 -0.32 -19.03 16 11 C 0.22 3.55 5.81 -5.19 -0.03 3.52 16 12 C -0.02 -0.47 6.21 -35.62 -0.22 -0.69 16 13 C -0.17 -3.22 9.43 -39.70 -0.37 -3.59 16 14 C -0.22 -3.80 10.91 -39.71 -0.43 -4.24 16 15 C -0.06 -0.93 12.09 29.41 0.36 -0.58 16 16 O -0.17 -3.20 10.65 5.68 0.06 -3.14 16 17 S 2.60 46.35 5.32 -107.50 -0.57 45.78 16 18 O -0.93 -20.93 16.99 -57.54 -0.98 -21.91 16 19 O -0.96 -18.58 16.99 -57.54 -0.98 -19.56 16 20 C -0.64 -7.62 6.18 37.15 0.23 -7.39 16 21 C -0.11 -1.13 5.22 -26.73 -0.14 -1.27 16 22 C -0.12 -1.03 5.34 -26.73 -0.14 -1.18 16 23 C -0.03 -0.26 6.66 37.15 0.25 -0.01 16 24 Cl -0.19 -1.78 29.15 -51.86 -1.51 -3.29 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 27 H 0.04 0.86 8.00 -51.93 -0.42 0.44 16 28 H 0.11 1.46 8.00 -51.93 -0.42 1.05 16 29 H 0.08 1.09 7.61 -51.93 -0.40 0.69 16 30 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 31 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 32 H 0.19 2.35 8.06 -52.48 -0.42 1.93 16 33 H 0.13 1.19 8.14 -51.92 -0.42 0.77 16 34 H 0.13 1.50 8.14 -51.92 -0.42 1.08 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -34.74 368.24 -9.71 -44.45 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.77 Total: 1.13 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -0.92 Total: -22.04 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.42 Total: -43.79 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.89 Total: -44.61 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 46.35 SS G_CDS: -0.57 Total: 45.78 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -1.51 Total: -3.29 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.74 -9.71 -44.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228327734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.963 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds